Rmu_sc0000787.1_g000002

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000787.1
OG0000042
Physical Location & Seq
Forward (+)
19500 .. 28397
8898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000787.1_g000002.1.cds

Sequence Viewer

Length: 4866 bp
atggatcgtatgacgctgacttctaatctactgtgggtcgctagacagaggtggcagctgtggtggatctgggctttcaggttggtgggcatggcggaggcaaggcacggtgagtctttcatcgatttcttggtgatagatttggtgtggtttgctgtatggttcaggcagcttcgacttggggagctcgaagacatggggctgcattggtggcctgccggtgggtcacctaatgacaagggtgaggagtactgtggcggcgactattttattttggttagagtcttgtttttagttaggttgttggttaggttaatttggtctatagttggtccctactcgtttgagctagggttgggtcaaattgatgtgccatggatgtggtgtctttccttgcacgtggtttggtttcattgggacgcggtgtggaagagggcgctggtttctttggcggttgtctatagggtgttatcgagtttcttggggttatcggtagcctgtgaggttgggcgaaatagctggttaggggttgggctcttttggctcatggatgtcattattgatgacagacctgtaactagtttggtttttagggaggagagtggggcgttcatgtccatcaccacatcaatcatggcatttcttattgatattggaactggaattgttgcaaaaattgcggagtacacggttgcaccagttgggcgccaagtgggctatctaattttttacaaccgcaacctcaaaaacctagatagtcaactgagcgacttaattgccatgagacaggatgtggagcagaagattggagaagagaagagaaataatagagaagcggaagtccatgtcagcaaatgggtgatagatgccaagagcctcacaaaagaggcaaacgatatcttgaatgaagaacataaagcaaaggtgaagtgtctctgtggattatgtcctaatctaatgcttcgtcatcagttaagtcgaaaatcaacaaaattggttcccgacattgctgaactctatgcaaaaattgatgttaaaacttttgcacatgctaccaccccacaagatgtacccaccaaagattatgaggccttcagatcaaggactttattggtggaccaaataatggatgtattgagtagtccaaatattgacatgataggagtgtacgggtttggtggtgtgggaaagaccacacttgtcaaagaagtttcccggcaagctacagaagacaaaacattatttgatgatgtggctatgatattggatgtaaaacaaaatccaagcatcccaagaattcaaaaagaaattgctgagaagttaggtcttgaccttcctgaaaatgagactgttgctgcaagagcacgccgtctatttagcaggataaaagatcaaaagactctcgtaattttagatgatgtgtgggaaagaattgatttggaagctgtgggactttctggtgtggccacttgtaaagtattgctaacatcaagaatgcgagaagtattatctcgtgagatgcatacacaaaaagagtttccgcttgatcttttaggggaagaagaaacatggaatttgttcaagaagaaggcaggtgatggtattaaagatcctgccataaaaactatagcaaccaaagtagccaaaagatgtggaggtttgccggttttagttgtcactgttgccagtgccttgaaaaatagtacattacatgcatggaaagatgcgttgagacgtttgaaaaggtttgacaaagaagaattcacagaaaagacatacttggccctagaatggagttatagtcagttaaatgatggtgagcttaagccattattcttgctctgtggattttatactctttctccaaaaactatccatatccaatacctattcaaatatggcattggtttgggtttgtttaaaaacctcaatacattgggagaagcatgggatgcattaaattcacagcttgagaaactgaagaattcttgtctagtgcttgaccatgaagatagtgggtgtgtcaaaatgcatgatcttgtgcatgatgttgctaaacgtatttcatcaagggataagcaagtgttgaaaataagttgtggagatgagttgaaagaatggccagactgtgaaaagtgcactatgatctctctccaaatgcttaatatccctaaacttcctgaagttttgcaatgtaaagaactaaagttgtttcatctttacaatattgctgaggattactccctagaaatcccgtgcaacttttttaaagaaacgacagaactcggagtgttggatttaacttgtctgagtatcccatcactacctcaatctcttcagttcctaaaaaatctaaagacattgtgtttagacgcctgcatcttgggtgacattgctctaattggccagctacataacttagaagtgcttagctttctagaatccaagtttaaagagttgcccaaagaaatagggcaattgactcatctacgatcgttggatttgactaattgctctcaactggaactaattgaacctaatgttatatccagattgaaaagactagaagaattgaggatgggaaatagctttaaccgatgggaggctgaaggagtcatcagtactgagaaaaatagtgcaagcctttcagagctcaagcacttgtctaagctaagcgtcttggatatacatatcttggatgctaatattcttccaacagacttgttctccaatgcattggaaaggtaccaaatatatattggtgctgcatggaactgggatgatgctgatgccaacctcaacacattgaaaatcgagctcactactaccagtaatgaactgtaccaatctggtttgaatatgttgttgaaaagaaccgatgagttacacttaaatgggatggagactgataataatactacctatcaattagatggcgaaggatttcagcaactgaaacatctccatgtccacaatgctgattttagacatatcattaatgggaagggtgtttttcccaacttaaaaaggttggtggtgagtgacctagatggttcaagatttttattatcatcttccatggctagaagtcttgtacaactcacacatcttcagatatctggatgtcaaaccatggaagagatagtatcaacaaacgaatctaatgaaaagcatatgaaggacatgttttctaagctacaacatttggagctaaaagatcttccaatcctcacaagattctactcaagaagttatattggatttccgtgttcggggatttttcaattagagaactacaatgaaattgaagaaagggactcaatagaaaaccttgagactgctttgtttgacgaaaaggtagtatttccaagcttgaagagattgttcatcaatggcttgaccaggttaacgacactatggcacaaccaactctctccagagagtttcaaaaatctagagatagtagacgtttgtttgtgtcaaagtttgaaaagtgtttttccatcctcaatggttagaagtctaaagcagttaatgcatctgaaagtgattaactgcggagtggaggaaatcattgcaaatgaagatggactacaaacaacacaggagtttgtattctcaaaagtaaactctgtcttttttcgggatttgccacatttgaggtgtttctatcctggaatgcatatttcctggtggccatcacttgaagacttgggggtatatggttgcagtaaaatggtgattttggcccaagaatgttcaagctttgagagaaactacgagtcgaagagtcttacaccaactaaccaagctctcttggtaattaagaaggattcattccccaacttgaaagtagcgggcatgtccggtatggagatttgggatggtccattcccagtaaagttctttaacaaactagaatttcttcgacttggtaataaacagtccgagtctactgctgtacttgagaaattccttgatcccgataaactcagtataacgaggtctgctgcttccaatgaaatatatttccatgagaaaagcagtggtggagatataaatgcagttgggaccctccctcatttaagtgagttatggctctggggcatgtggaagctgaagcatttaggggaagatgattcccaaatagcaggtcaaaattttccgaaactgaaaattctatggataagtggttgtaacagcttaaggaatctaagatcatcagctatatccttcaagaatctgacaaaattgcaagtcactgattgtcggagattggaatacttgttaacttactcgataggtaaaagtttcatgcaactcacatgcctgatagttgaggattgtgcaagactggtagaaatagtgggtagcacagaagaagataatgattcaggaaatgagattgtatttagcaagttgaaatatctgaaactttctaacctaccaagattgcaaggctttcgctctggagattggattgtcagattcccatctttggaaactttaatcataagcaaacgcctcaagctgaagatttttcataacgatgaaacgctacaggtgacagaagaagaggttgacacagacgttgaagctgatgatggtgcaacggtactaaaggaaaagatcgacatagatactggtggtgctgatggtgaacaaattgatgaaactacacaggtagacgcaaatgttgatgaaacgtgctcggagatgccgccattgctcatcgaatccggtgcgagagaagtccagaacgcacacctgtttgagaggaagactgtgcgcttaatgtgtgtactattgtcagtgtgcgtgctactgttggtgttcgggacttacatgcgtgatttgcttgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1621

Amino Acids

184.45

Weight (kDa)

5.65

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1583
Acc36I ACCTGC 2 cut(s) 1583, 4142
Acc65I GGTACC 1 cut(s) 2745
AccB1I GGYRCC 2 cut(s) 705, 2745
AccB7I CCANNNNNTGG 1 cut(s) 1126
AccI GTMKAC 3 cut(s) 3465, 3953, 4686
AccII CGCG 1 cut(s) 422
AclWI GGATC 4 cut(s) 12, 74, 1604, 3974
AcoI YGGCCR 4 cut(s) 1464, 2120, 2404, 3695
AcsI RAATTY 9 cut(s) 1296, 1573, 1760, 1960, 1984, 3920, 3971, 4159, 4176
AcuI CTGAAG 8 cut(s) 1078, 2000, 2202, 2321, 2628, 3095, 4139, 4553
AcvI CACGTG 1 cut(s) 400
AcyI GRCGYC 2 cut(s) 706, 2373
AfiI CCNNNNNNNGG 6 cut(s) 221, 1126, 1791, 2602, 3272, 4498
AflII CTTAAG 2 cut(s) 1823, 4204
AflIII ACRYGT 1 cut(s) 3183
AhlI ACTAGT 1 cut(s) 578
AjnI CCWGG 3 cut(s) 3401, 3673, 3689
Alw21I GWGCWC 6 cut(s) 189, 1366, 2141, 2655, 2820, 4712
Alw26I GTCTC 6 cut(s) 778, 938, 1340, 1726, 2897, 3329
Alw44I GTGCAC 1 cut(s) 2137
AlwI GGATC 4 cut(s) 12, 74, 1604, 3974
AlwNI CAGNNNCTG 1 cut(s) 2953
AoxI GGCC 8 cut(s) 212, 1089, 1464, 1782, 2120, 2404, 3695, 3747
ApaLI GTGCAC 1 cut(s) 2137
ApeKI GCWGC 6 cut(s) 55, 169, 202, 1355, 2765, 4010
ApoI RAATTY 9 cut(s) 1296, 1573, 1760, 1960, 1984, 3920, 3971, 4159, 4176
ArsI GACNNNNNNTTYG 2 cut(s) 4138, 4170
AseI ATTAAT 1 cut(s) 2997
Asp700I GAANNNNTTC 3 cut(s) 1577, 2943, 3924
Asp718I GGTACC 1 cut(s) 2745
AspLEI GCGC 3 cut(s) 439, 708, 4791
AspS9I GGNCC 6 cut(s) 332, 1117, 1783, 3748, 3887, 4071
AsuC2I CCSGG 1 cut(s) 1216
AvaII GGWCC 4 cut(s) 332, 1117, 3887, 4071
BaeGI GKGCMC 1 cut(s) 2141
BalI TGGCCA 4 cut(s) 1466, 2122, 2406, 3697
BanI GGYRCC 2 cut(s) 705, 2745
BanII GRGCYC 4 cut(s) 189, 537, 2655, 2820
BarI GAAGNNNNNNTAC 2 cut(s) 3576, 3608
BauI CACGAG 1 cut(s) 1512
BbrPI CACGTG 1 cut(s) 400
BbsI GAAGAC 4 cut(s) 198, 1236, 3714, 4787
Bbv12I GWGCWC 6 cut(s) 189, 1366, 2141, 2655, 2820, 4712
BbvCI CCTCAGC 1 cut(s) 2232
BbvI GCAGC 6 cut(s) 67, 181, 189, 1342, 2752, 3997
BceAI ACGGC 1 cut(s) 1353
BcgI CGANNNNNNTGC 8 cut(s) 758, 792, 3938, 3972, 4445, 4479, 4724, 4758
BciT130I CCWGG 3 cut(s) 3403, 3675, 3691
BciVI GTATCC 1 cut(s) 2324
BcnI CCSGG 1 cut(s) 1216
BcoDI GTCTC 6 cut(s) 778, 938, 1340, 1726, 2897, 3329
BcuI ACTAGT 1 cut(s) 578
BfmI CTRYAG 5 cut(s) 324, 460, 1224, 1626, 4559
BfoI RGCGCY 2 cut(s) 440, 709
BfrI CTTAAG 2 cut(s) 1823, 4204
BfuAI ACCTGC 2 cut(s) 1583, 4142
BfuI GTATCC 1 cut(s) 2324
BglI GCCNNNNNGGC 1 cut(s) 714
BglII AGATCT 1 cut(s) 3217
BisI GCNGC 8 cut(s) 56, 170, 203, 259, 1356, 2766, 4011, 4721
BlpI GCTNAGC 2 cut(s) 2429, 2672
BlsI GCNGC 8 cut(s) 57, 171, 204, 260, 1357, 2767, 4012, 4722
BmcAI AGTACT 2 cut(s) 251, 2623
Bme1390I CCNGG 4 cut(s) 1216, 3403, 3675, 3691
Bme18I GGWCC 4 cut(s) 332, 1117, 3887, 4071
BmgT120I GGNCC 6 cut(s) 332, 1117, 1783, 3748, 3887, 4071
BmiI GGNNCC 6 cut(s) 334, 707, 999, 2747, 4072, 4073
BmrFI CCNGG 4 cut(s) 1216, 3403, 3675, 3691
BmrI ACTGGG 2 cut(s) 2785, 3890
BmuI ACTGGG 2 cut(s) 2785, 3890
BpiI GAAGAC 4 cut(s) 198, 1236, 3714, 4787
BplI GAGNNNNNCTC 2 cut(s) 2225, 2257
BpmI CTGGAG 2 cut(s) 3420, 4491
Bpu10I CCTNAGC 1 cut(s) 2232
Bpu1102I GCTNAGC 2 cut(s) 2429, 2672
BpuEI CTTGAG 6 cut(s) 1991, 2639, 3229, 3353, 3986, 4511
BpuMI CCSGG 1 cut(s) 1216
Bsa29I ATCGAT 1 cut(s) 123
BsaAI YACGTR 1 cut(s) 400
BsaBI GATNNNNATC 1 cut(s) 4492
BsaHI GRCGYC 2 cut(s) 706, 2373
BsaJI CCNNGG 3 cut(s) 374, 3078, 3132
BsaWI WCCGGW 2 cut(s) 3866, 4739
BsaXI ACNNNNNCTCC 6 cut(s) 1786, 1816, 1846, 1876, 2711, 2741
Bsc4I CCNNNNNNNGG 6 cut(s) 221, 1126, 1791, 2602, 3272, 4498
Bse118I RCCGGY 2 cut(s) 218, 1663
Bse1I ACTGG 9 cut(s) 664, 698, 1686, 2526, 2780, 2829, 3896, 4359, 4648
Bse3DI GCAATG 5 cut(s) 1005, 2198, 2391, 3573, 4724
Bse8I GATNNNNATC 1 cut(s) 4492
BseBI CCWGG 3 cut(s) 3403, 3675, 3691
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 3 cut(s) 374, 3078, 3132
BseJI GATNNNNATC 1 cut(s) 4492
BseLI CCNNNNNNNGG 6 cut(s) 221, 1126, 1791, 2602, 3272, 4498
BseMI GCAATG 5 cut(s) 1005, 2198, 2391, 3573, 4724
BseMII CTCAG 6 cut(s) 755, 1305, 2223, 2300, 2616, 4006
BseNI ACTGG 9 cut(s) 664, 698, 1686, 2526, 2780, 2829, 3896, 4359, 4648
BseRI GAGGAG 2 cut(s) 260, 611
BseSI GKGCMC 1 cut(s) 2141
BseXI GCAGC 6 cut(s) 67, 181, 189, 1342, 2752, 3997
Bsh1236I CGCG 1 cut(s) 422
Bsh1285I CGRYCG 1 cut(s) 2495
BshFI GGCC 8 cut(s) 214, 1091, 1466, 1784, 2122, 2406, 3697, 3749
BshNI GGYRCC 2 cut(s) 705, 2745
BshVI ATCGAT 1 cut(s) 123
BsiEI CGRYCG 1 cut(s) 2495
BsiHKAI GWGCWC 6 cut(s) 189, 1366, 2141, 2655, 2820, 4712
BsiSI CCGG 5 cut(s) 219, 1216, 1664, 3867, 4740
BslFI GGGAC 6 cut(s) 318, 431, 1464, 3329, 4084, 4852
BslI CCNNNNNNNGG 6 cut(s) 221, 1126, 1791, 2602, 3272, 4498
BsmAI GTCTC 6 cut(s) 778, 938, 1340, 1726, 2897, 3329
BsmBI CGTCTC 1 cut(s) 1726
BsmFI GGGAC 6 cut(s) 318, 431, 1464, 3329, 4084, 4852
BsmI GAATGC 2 cut(s) 1500, 3684
BsnI GGCC 8 cut(s) 214, 1091, 1466, 1784, 2122, 2406, 3697, 3749
Bsp1286I GDGCHC 7 cut(s) 189, 537, 1366, 2141, 2655, 2820, 4712
Bsp1407I TGTACA 1 cut(s) 3094
Bsp1720I GCTNAGC 2 cut(s) 2429, 2672
Bsp19I CCATGG 3 cut(s) 374, 3078, 3132
BspANI GGCC 8 cut(s) 214, 1091, 1466, 1784, 2122, 2406, 3697, 3749
BspCNI CTCAG 6 cut(s) 756, 1306, 2224, 2301, 2617, 4005
BspDI ATCGAT 1 cut(s) 123
BspFNI CGCG 1 cut(s) 422
BspLI GGNNCC 6 cut(s) 334, 707, 999, 2747, 4072, 4073
BspMI ACCTGC 2 cut(s) 1583, 4142
BspPI GGATC 4 cut(s) 12, 74, 1604, 3974
BspT107I GGYRCC 2 cut(s) 705, 2745
BspTI CTTAAG 2 cut(s) 1823, 4204
BsrDI GCAATG 5 cut(s) 1005, 2198, 2391, 3573, 4724
BsrFI RCCGGY 2 cut(s) 218, 1663
BsrGI TGTACA 1 cut(s) 3094
BsrI ACTGG 9 cut(s) 664, 698, 1686, 2526, 2780, 2829, 3896, 4359, 4648
BssAI RCCGGY 2 cut(s) 218, 1663
BssECI CCNNGG 3 cut(s) 374, 3078, 3132
BssNI GRCGYC 2 cut(s) 706, 2373
BssSI CACGAG 1 cut(s) 1512
BssT1I CCWWGG 3 cut(s) 374, 3078, 3132
Bst2BI CACGAG 1 cut(s) 1512
Bst2UI CCWGG 3 cut(s) 3403, 3675, 3691
Bst6I CTCTTC 8 cut(s) 425, 807, 812, 2340, 3132, 3371, 3782, 4569
BstACI GRCGYC 2 cut(s) 706, 2373
BstAFI CTTAAG 2 cut(s) 1823, 4204
BstAPI GCANNNNNTGC 3 cut(s) 677, 1952, 3535
BstAUI TGTACA 1 cut(s) 3094
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 8 cut(s) 216, 1221, 1366, 2377, 2408, 2641, 3859, 4820
BstDSI CCRYGG 3 cut(s) 374, 3078, 3132
BstEII GGTNACC 1 cut(s) 225
BstFNI CGCG 1 cut(s) 422
BstH2I RGCGCY 2 cut(s) 440, 709
BstHHI GCGC 3 cut(s) 439, 708, 4791
BstMAI GTCTC 6 cut(s) 778, 938, 1340, 1726, 2897, 3329
BstMCI CGRYCG 1 cut(s) 2495
BstMWI GCNNNNNNNGC 9 cut(s) 211, 541, 677, 714, 1361, 1952, 3535, 4726, 4855
BstNI CCWGG 3 cut(s) 3403, 3675, 3691
BstNSI RCATGY 7 cut(s) 1052, 1715, 3187, 3865, 4111, 4329, 4849
BstPI GGTNACC 1 cut(s) 225
BstSCI CCNGG 4 cut(s) 1214, 3401, 3673, 3689
BstSFI CTRYAG 5 cut(s) 324, 460, 1224, 1626, 4559
BstSLI GKGCMC 1 cut(s) 2141
BstUI CGCG 1 cut(s) 422
BstV1I GCAGC 6 cut(s) 67, 181, 189, 1342, 2752, 3997
BstV2I GAAGAC 4 cut(s) 198, 1236, 3714, 4787
BstX2I RGATCY 3 cut(s) 66, 1609, 3217
BstXI CCANNNNNNTGG 2 cut(s) 381, 2737
BstYI RGATCY 3 cut(s) 66, 1609, 3217
Bsu15I ATCGAT 1 cut(s) 123
BsuI GTATCC 1 cut(s) 2324
BsuRI GGCC 8 cut(s) 214, 1091, 1466, 1784, 2122, 2406, 3697, 3749
BsuTUI ATCGAT 1 cut(s) 123
BtgI CCRYGG 3 cut(s) 374, 3078, 3132
BtsI GCAGTG 1 cut(s) 4051
BtsIMutI CAGTG 5 cut(s) 1677, 1693, 4051, 4260, 4818
BveI ACCTGC 2 cut(s) 1583, 4142
Cac8I GCNNGC 8 cut(s) 216, 1221, 1366, 2377, 2408, 2641, 3859, 4820
CaiI CAGNNNCTG 1 cut(s) 2953
CfoI GCGC 3 cut(s) 439, 708, 4791
Cfr10I RCCGGY 2 cut(s) 218, 1663
Cfr13I GGNCC 6 cut(s) 332, 1117, 1783, 3748, 3887, 4071
ClaI ATCGAT 1 cut(s) 123
CseI GACGC 5 cut(s) 22, 428, 2381, 2665, 4697
CsiI ACCWGGT 1 cut(s) 3401
CspCI CAANNNNNGTGG 2 cut(s) 1633, 1668
DinI GGCGCC 1 cut(s) 707
DraI TTTAAA 3 cut(s) 1921, 2269, 2452
EaeI YGGCCR 4 cut(s) 1464, 2120, 2404, 3695
Eam1104I CTCTTC 8 cut(s) 425, 807, 812, 2340, 3132, 3371, 3782, 4569
EarI CTCTTC 8 cut(s) 425, 807, 812, 2340, 3132, 3371, 3782, 4569
EciI GGCGGA 1 cut(s) 110
Ecl136II GAGCTC 3 cut(s) 187, 2653, 2818
Eco130I CCWWGG 3 cut(s) 374, 3078, 3132
Eco147I AGGCCT 1 cut(s) 1091
Eco24I GRGCYC 4 cut(s) 189, 537, 2655, 2820
Eco32I GATATC 2 cut(s) 898, 3117
Eco47I GGWCC 4 cut(s) 332, 1117, 3887, 4071
Eco53kI GAGCTC 3 cut(s) 187, 2653, 2818
Eco57I CTGAAG 8 cut(s) 1078, 2000, 2202, 2321, 2628, 3095, 4139, 4553
Eco72I CACGTG 1 cut(s) 400
Eco91I GGTNACC 1 cut(s) 225
EcoICRI GAGCTC 3 cut(s) 187, 2653, 2818
EcoO109I RGGNCCY 1 cut(s) 4071
EcoO65I GGTNACC 1 cut(s) 225
EcoRI GAATTC 3 cut(s) 1296, 1760, 1984
EcoRII CCWGG 3 cut(s) 3401, 3673, 3689
EcoRV GATATC 2 cut(s) 898, 3117
EcoT14I CCWWGG 3 cut(s) 374, 3078, 3132
EcoT22I ATGCAT 7 cut(s) 1524, 1717, 1957, 2034, 2737, 3540, 3684
EcoT38I GRGCYC 4 cut(s) 189, 537, 2655, 2820
EgeI GGCGCC 1 cut(s) 707
EheI GGCGCC 1 cut(s) 707
ErhI CCWWGG 3 cut(s) 374, 3078, 3132
Esp3I CGTCTC 1 cut(s) 1726
FalI AAGNNNNNCTT 2 cut(s) 1763, 1795
FaqI GGGAC 6 cut(s) 318, 431, 1464, 3329, 4084, 4852
FauI CCCGC 1 cut(s) 3850
FauNDI CATATG 1 cut(s) 3174
FblI GTMKAC 3 cut(s) 3465, 3953, 4686
Fnu4HI GCNGC 8 cut(s) 56, 170, 203, 259, 1356, 2766, 4011, 4721
FriOI GRGCYC 4 cut(s) 189, 537, 2655, 2820
Fsp4HI GCNGC 8 cut(s) 56, 170, 203, 259, 1356, 2766, 4011, 4721
GlaI GCGC 3 cut(s) 438, 707, 4790
GluI GCNGC 8 cut(s) 56, 170, 203, 259, 1356, 2766, 4011, 4721
GsuI CTGGAG 2 cut(s) 3420, 4491
HaeII RGCGCY 2 cut(s) 440, 709
HaeIII GGCC 8 cut(s) 214, 1091, 1466, 1784, 2122, 2406, 3697, 3749
HapII CCGG 5 cut(s) 219, 1216, 1664, 3867, 4740
HgaI GACGC 5 cut(s) 22, 428, 2381, 2665, 4697
HhaI GCGC 3 cut(s) 439, 708, 4791
Hin1I GRCGYC 2 cut(s) 706, 2373
Hin6I GCGC 3 cut(s) 437, 706, 4789
HinP1I GCGC 3 cut(s) 437, 706, 4789
HincII GTYRAC 4 cut(s) 761, 3408, 4290, 4582
HindII GTYRAC 4 cut(s) 761, 3408, 4290, 4582
HindIII AAGCTT 2 cut(s) 3370, 3763
HpaI GTTAAC 2 cut(s) 3408, 4290
HpaII CCGG 5 cut(s) 219, 1216, 1664, 3867, 4740
HpyAV CCTTC 9 cut(s) 1102, 1343, 1582, 2603, 2933, 2998, 3172, 3823, 4243
HpyCH4IV ACGT 6 cut(s) 399, 1735, 2059, 3468, 4590, 4706
HpyF10VI GCNNNNNNNGC 9 cut(s) 211, 541, 677, 714, 1361, 1952, 3535, 4726, 4855
HpySE526I ACGT 6 cut(s) 399, 1735, 2059, 3468, 4590, 4706
Hsp92I GRCGYC 2 cut(s) 706, 2373
HspAI GCGC 3 cut(s) 437, 706, 4789
KasI GGCGCC 1 cut(s) 705
KflI GGGWCCC 1 cut(s) 4071
KpnI GGTACC 1 cut(s) 2749
KspAI GTTAAC 2 cut(s) 3408, 4290
LmnI GCTCC 3 cut(s) 184, 796, 3208
Lsp1109I GCAGC 6 cut(s) 67, 181, 189, 1342, 2752, 3997
MabI ACCWGGT 1 cut(s) 3401
MaeII ACGT 6 cut(s) 399, 1735, 2059, 3468, 4590, 4706
MaeIII GTNAC 9 cut(s) 225, 574, 1675, 2387, 2883, 3041, 4196, 4258, 4564
MfeI CAATTG 1 cut(s) 2477
MflI RGATCY 3 cut(s) 66, 1609, 3217
MhlI GDGCHC 7 cut(s) 189, 537, 1366, 2141, 2655, 2820, 4712
MlsI TGGCCA 4 cut(s) 1466, 2122, 2406, 3697
MluNI TGGCCA 4 cut(s) 1466, 2122, 2406, 3697
Mly113I GGCGCC 1 cut(s) 706
MlyI GAGTC 9 cut(s) 122, 291, 1393, 2476, 2622, 3311, 3791, 3799, 3959
MmeI TCCRAC 4 cut(s) 2274, 2478, 2738, 4250
Mox20I TGGCCA 4 cut(s) 1466, 2122, 2406, 3697
Mph1103I ATGCAT 7 cut(s) 1524, 1717, 1957, 2034, 2737, 3540, 3684
MroXI GAANNNNTTC 3 cut(s) 1577, 2943, 3924
MscI TGGCCA 4 cut(s) 1466, 2122, 2406, 3697
MslI CAYNNNNRTG 5 cut(s) 379, 2892, 2964, 4086, 4548
Msp20I TGGCCA 4 cut(s) 1466, 2122, 2406, 3697
MspA1I CMGCKG 1 cut(s) 58
MspCI CTTAAG 2 cut(s) 1823, 4204
MspI CCGG 5 cut(s) 219, 1216, 1664, 3867, 4740
MspR9I CCNGG 4 cut(s) 1216, 3403, 3675, 3691
MunI CAATTG 1 cut(s) 2477
Mva1269I GAATGC 2 cut(s) 1500, 3684
MvaI CCWGG 3 cut(s) 3403, 3675, 3691
MvnI CGCG 1 cut(s) 422
MwoI GCNNNNNNNGC 9 cut(s) 211, 541, 677, 714, 1361, 1952, 3535, 4726, 4855
NarI GGCGCC 1 cut(s) 706
NciI CCSGG 1 cut(s) 1216
NcoI CCATGG 3 cut(s) 374, 3078, 3132
NdeI CATATG 1 cut(s) 3174
NlaIV GGNNCC 6 cut(s) 334, 707, 999, 2747, 4072, 4073
NmuCI GTSAC 6 cut(s) 225, 1675, 2387, 3041, 4258, 4564
NsiI ATGCAT 7 cut(s) 1524, 1717, 1957, 2034, 2737, 3540, 3684
NspI RCATGY 7 cut(s) 1052, 1715, 3187, 3865, 4111, 4329, 4849
PaqCI CACCTGC 1 cut(s) 1583
PceI AGGCCT 1 cut(s) 1091
PciI ACATGT 1 cut(s) 3183
PctI GAATGC 2 cut(s) 1500, 3684
PdmI GAANNNNTTC 3 cut(s) 1577, 2943, 3924
PflMI CCANNNNNTGG 1 cut(s) 1126
PfoI TCCNGGA 1 cut(s) 3673
PkrI GCNGC 8 cut(s) 57, 171, 204, 260, 1357, 2767, 4012, 4722
Ple19I CGATCG 1 cut(s) 2495
PleI GAGTC 9 cut(s) 121, 290, 1393, 2476, 2621, 3311, 3790, 3798, 3958
PluTI GGCGCC 1 cut(s) 709
PmaCI CACGTG 1 cut(s) 400
PmlI CACGTG 1 cut(s) 400
PpsI GAGTC 9 cut(s) 121, 290, 1393, 2476, 2621, 3311, 3790, 3798, 3958
Ppu21I YACGTR 1 cut(s) 400
PpuMI RGGWCCY 1 cut(s) 4071
PscI ACATGT 1 cut(s) 3183
PshBI ATTAAT 1 cut(s) 2997
Psp124BI GAGCTC 3 cut(s) 189, 2655, 2820
Psp5II RGGWCCY 1 cut(s) 4071
Psp6I CCWGG 3 cut(s) 3401, 3673, 3689
PspCI CACGTG 1 cut(s) 400
PspEI GGTNACC 1 cut(s) 225
PspGI CCWGG 3 cut(s) 3401, 3673, 3689
PspN4I GGNNCC 6 cut(s) 334, 707, 999, 2747, 4072, 4073
PspPI GGNCC 6 cut(s) 332, 1117, 1783, 3748, 3887, 4071
PspPPI RGGWCCY 1 cut(s) 4071
PstNI CAGNNNCTG 1 cut(s) 2953
PsuI RGATCY 3 cut(s) 66, 1609, 3217
PvuI CGATCG 1 cut(s) 2495
PvuII CAGCTG 1 cut(s) 58
RseI CAYNNNNRTG 5 cut(s) 379, 2892, 2964, 4086, 4548
SacI GAGCTC 3 cut(s) 189, 2655, 2820
SatI GCNGC 8 cut(s) 56, 170, 203, 259, 1356, 2766, 4011, 4721
Sau96I GGNCC 6 cut(s) 332, 1117, 1783, 3748, 3887, 4071
ScaI AGTACT 2 cut(s) 251, 2623
SchI GAGTC 9 cut(s) 122, 291, 1393, 2476, 2622, 3311, 3791, 3799, 3959
ScrFI CCNGG 4 cut(s) 1216, 3403, 3675, 3691
SduI GDGCHC 7 cut(s) 189, 537, 1366, 2141, 2655, 2820, 4712
SexAI ACCWGGT 1 cut(s) 3401
SfcI CTRYAG 5 cut(s) 324, 460, 1224, 1626, 4559
SfoI GGCGCC 1 cut(s) 707
SinI GGWCC 4 cut(s) 332, 1117, 3887, 4071
SmiMI CAYNNNNRTG 5 cut(s) 379, 2892, 2964, 4086, 4548
SmlI CTYRAG 8 cut(s) 1823, 1970, 2654, 3244, 3332, 3965, 4204, 4526
SmoI CTYRAG 8 cut(s) 1823, 1970, 2654, 3244, 3332, 3965, 4204, 4526
SpeI ACTAGT 1 cut(s) 578
SseBI AGGCCT 1 cut(s) 1091
SspDI GGCGCC 1 cut(s) 705
SspI AATATT 3 cut(s) 1150, 2227, 2707
SstI GAGCTC 3 cut(s) 189, 2655, 2820
StuI AGGCCT 1 cut(s) 1091
StyD4I CCNGG 4 cut(s) 1214, 3401, 3673, 3689
StyI CCWWGG 3 cut(s) 374, 3078, 3132
TaiI ACGT 6 cut(s) 402, 1738, 2062, 3471, 4593, 4709
TatI WGTACW 7 cut(s) 249, 684, 1703, 2621, 3094, 3961, 4801
TauI GCSGC 2 cut(s) 261, 4723
TscAI CASTG 5 cut(s) 1684, 1693, 4051, 4267, 4818
TseFI GTSAC 6 cut(s) 225, 1675, 2387, 3041, 4258, 4564
TseI GCWGC 6 cut(s) 55, 169, 202, 1355, 2765, 4010
Tsp45I GTSAC 6 cut(s) 225, 1675, 2387, 3041, 4258, 4564
TspGWI ACGGA 1 cut(s) 3255
TspRI CASTG 5 cut(s) 1684, 1693, 4051, 4267, 4818
Van91I CCANNNNNTGG 1 cut(s) 1126
Vha464I CTTAAG 2 cut(s) 1823, 4204
VneI GTGCAC 1 cut(s) 2137
VpaK11BI GGWCC 4 cut(s) 332, 1117, 3887, 4071
VspI ATTAAT 1 cut(s) 2997
XapI RAATTY 9 cut(s) 1296, 1573, 1760, 1960, 1984, 3920, 3971, 4159, 4176
XbaI TCTAGA 2 cut(s) 2437, 3454
XceI RCATGY 7 cut(s) 1052, 1715, 3187, 3865, 4111, 4329, 4849
XcmI CCANNNNNNNNNTGG 3 cut(s) 631, 2012, 2756
XmiI GTMKAC 3 cut(s) 3465, 3953, 4686
XmnI GAANNNNTTC 3 cut(s) 1577, 2943, 3924
ZrmI AGTACT 2 cut(s) 251, 2623
Zsp2I ATGCAT 7 cut(s) 1524, 1717, 1957, 2034, 2737, 3540, 3684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.