Rh4BG074400

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
13128935 .. 13130705
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG074400.1

Sequence Viewer

Length: 453 bp
ATGGCGTTTCTTATTGATATTGCTGGAAAAGTTGTGGACTTAACGGTTGCGCCAATTGGACGCCAAGTGGGTTATCTAATCTACTACAATCGGAACGTAACAAAACTAGAGAATCAACTGAACGACTTGGTTGTTGTGAGTCAGAGTGTGCAACACAAGGTCGGTGAAGAAAAGAGAAACATAAGAGAAGTTGAAGCCCATGTCAACAAATGGCTGACAGATGTCCAAAAGATCACAGGAGAGGCAAACGAGATCTTGAATAAAGAACATGAAGAAAAGATGAAGTGTCTTTGTGGATTATGTCCTAATCTAATGCTTCGTCATCAGCTAAGTCGGAGATCAACAAAATTGGTTCCCGACATTGCTGAACTCTACGGGAAAAAAGAATTTAGCTCTTTTGCCCATGCTATCACCCCACAAGACATGGCTGCACCTTGGGAGATATACCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

17.15

Weight (kDa)

6.96

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 386
AcyI GRCGYC 1 cut(s) 61
AgsI TTSAA 2 cut(s) 194, 259
AluBI AGCT 2 cut(s) 328, 393
AluI AGCT 2 cut(s) 328, 393
ApeKI GCWGC 1 cut(s) 428
ApoI RAATTY 1 cut(s) 386
AspLEI GCGC 1 cut(s) 52
AsuHPI GGTGA 2 cut(s) 176, 403
BbvI GCAGC 1 cut(s) 415
BfaI CTAG 1 cut(s) 107
BglII AGATCT 1 cut(s) 252
BisI GCNGC 1 cut(s) 429
BlsI GCNGC 1 cut(s) 430
BmiI GGNNCC 1 cut(s) 354
BoxI GACNNNNGTC 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 434
Bse3DI GCAATG 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 434
BseMI GCAATG 1 cut(s) 360
BseXI GCAGC 1 cut(s) 415
BsgI GTGCAG 1 cut(s) 414
Bsp143I GATC 3 cut(s) 231, 252, 338
BspLI GGNNCC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 360
BssECI CCNNGG 1 cut(s) 434
BssMI GATC 3 cut(s) 231, 252, 338
BssNI GRCGYC 1 cut(s) 61
BssT1I CCWWGG 1 cut(s) 434
Bst4CI ACNGT 1 cut(s) 46
BstACI GRCGYC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 329
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 3 cut(s) 234, 255, 341
BstMBI GATC 3 cut(s) 231, 252, 338
BstPAI GACNNNNGTC 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 415
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
CfoI GCGC 1 cut(s) 52
CseI GACGC 1 cut(s) 69
CviAII CATG 4 cut(s) 200, 269, 404, 424
CviJI RGCY 5 cut(s) 197, 214, 328, 393, 428
CviKI_1 RGCY 5 cut(s) 197, 214, 328, 393, 428
DdeI CTNAG 1 cut(s) 329
DpnI GATC 3 cut(s) 233, 254, 340
DpnII GATC 3 cut(s) 231, 252, 338
Eco130I CCWWGG 1 cut(s) 434
EcoT14I CCWWGG 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 434
FaeI CATG 4 cut(s) 203, 272, 407, 427
FaiI YATR 7 cut(s) 182, 201, 270, 301, 405, 425, 445
FatI CATG 4 cut(s) 199, 268, 403, 423
Fnu4HI GCNGC 1 cut(s) 429
Fsp4HI GCNGC 1 cut(s) 429
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 429
HgaI GACGC 1 cut(s) 69
HhaI GCGC 1 cut(s) 52
Hin1I GRCGYC 1 cut(s) 61
Hin1II CATG 4 cut(s) 203, 272, 407, 427
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 2 cut(s) 112, 139
HphI GGTGA 2 cut(s) 176, 403
Hpy166II GTNNAC 2 cut(s) 37, 205
Hpy188I TCNGA 3 cut(s) 93, 144, 336
Hpy188III TCNNGA 2 cut(s) 256, 356
Hpy8I GTNNAC 2 cut(s) 37, 205
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 2 cut(s) 151, 431
HpyF3I CTNAG 1 cut(s) 329
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 61
Hsp92II CATG 4 cut(s) 203, 272, 407, 427
HspAI GCGC 1 cut(s) 50
Kzo9I GATC 3 cut(s) 231, 252, 338
LpnPI CCDG 2 cut(s) 9, 222
Lsp1109I GCAGC 1 cut(s) 415
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 97
MalI GATC 3 cut(s) 233, 254, 340
MboI GATC 3 cut(s) 231, 252, 338
MboII GAAGA 2 cut(s) 179, 284
MfeI CAATTG 1 cut(s) 54
MflI RGATCY 1 cut(s) 252
MluCI AATT 3 cut(s) 54, 347, 386
MlyI GAGTC 1 cut(s) 148
MmeI TCCRAC 1 cut(s) 314
MnlI CCTC 1 cut(s) 235
MseI TTAA 1 cut(s) 41
MunI CAATTG 1 cut(s) 54
NdeII GATC 3 cut(s) 231, 252, 338
NlaIII CATG 4 cut(s) 203, 272, 407, 427
NlaIV GGNNCC 1 cut(s) 354
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 430
PleI GAGTC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 147
PshAI GACNNNNGTC 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 354
PsuI RGATCY 1 cut(s) 252
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 1 cut(s) 429
Sau3AI GATC 3 cut(s) 231, 252, 338
SchI GAGTC 1 cut(s) 148
SetI ASST 6 cut(s) 99, 162, 330, 395, 436, 450
Sse9I AATT 3 cut(s) 54, 347, 386
SspMI CTAG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 434
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 99
TasI AATT 3 cut(s) 54, 347, 386
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseI GCWGC 1 cut(s) 428
TspDTI ATGAA 2 cut(s) 285, 296
XapI RAATTY 1 cut(s) 386
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.