Rh5DG124000

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
11266559 .. 11280613
14055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG124000.1

Sequence Viewer

Length: 3153 bp
ATGAGCAAAAGATCAAAGCTTTGTTGTGGAAAAGCGAAAAGCCTACTAAATAATAGGAATGGAGTTTCTTTCAAAGATTGTGGAGATCAAGTAAAAGAATTGAAAGCTGCCAGAGACACGATAAAGGATAAGGTTGCTGAAGCTGAAACAAAAGGTGAAAAAATACGAAGTGATGTCGAGTTGTGGCTGAAAACAGCGGACGCGATCACTGCAAAGACAGACCAATTGTTGAATGACGAAAGGCAAGCCAAGCTGAAATGTCTCCATGGCTTTTGTCCTAATCTGACTGTTCGTCATCAGATAAGCAGGAAATCAACAAAATTGGTTGAGGAGGTTGTTGAACAGTGTGGAAAAAAAGAATTTCCCCAAGTTTCGTGTGGTAATTTACGGAAGGAGGTATGGGATGTTTCTACCGGAGATTACCAGGCCTTTGAATCAAGGATGTTAATTGTGAAGGACATCATGGATAGTCTGAAAGACTCTGATATTCAGAGGATTGGGGTGTGTGGAATTGGAGGAGTGGGTAAAACCACATTGGTCAAACAAGTTTACAGGCAAGCTTCAGAAAAACAGTTATTTGATAATGTGGTTATGGTATTAGATGTGAAAAGTAATCCAGACCTGGAATTAATTCAAAAGAAAATTGTTGAGAAGTTGGGTATGGACATTCTTGATAATGAAACGATAGACGGAAGAGCGAGCCGTCTATGTGCCAGGATACAAGGCAAAAAGATTCTTGTGATTCTGGATGATGTTCAAGAAAAAATTGAGTTGGAGAATATGGGACTTCCCCGTCTGCCAACTTGTAAAATTTTGTTGACGTGCAGAAGTCGAGATGTTTTATCTTTTGATAAGATGCGTGCAGATAAAGTGTTTTCACTTGACCTTTTAGATTTGAGAATGAGAAGCAGCTTTAACAGATGGGAGGTTGAAGGTGAAAGTAGTAATGCCAGCCTGTCTGAGCTAAAGCACTTGTCTCAGCTATCTGCATTAGAAATACATATTCCGAATGCTGACATTCTTCCAGCAAACTTGTTCTCCCACAAGTTAGAGAGATATAATATTTATATTGGAGATGCATGGGGTGGGAGATATTCTATGGCTGAAACAACCCTTAACACTCTGAAACTCAAGCTCACTAACAATAATATTTTGGGATTGGATGAAGGCCTAAAATCGTTGCTGAAGAGATCTGAGGACTTGTCCTTAGATGAGAGTATTGTTAATATTGTCCAGCAATTAGATACCAAAGATTTTGAAAATGTGAAACACCTCCAACTCCAAAACATATGTGATTGTACAGATATCCTTAATAGACAGGTTGTATTCCGCAACTTAGCAACCTTGTCGGTGTGTGGATGTGATAATTTAAAAGTATTGTTCTCATCTTCCACGTCTAAAAGTCTTGTACATCTCAAACATCTAAACGTATCCACCTGTAAGCTCCTGCAAGAGATTGTATCATCAACAAAAGAAGGCGGTGAAGACAATATTGATGACATGTTTCCTAAACTTGAAGTTTTGAAGCTGGAAGCACTTCCAAACCTGGCTAGATTTAGCACAGGAAATTATATCGAGTTTCCGTCATTGGAAAAATTGGAGGTAGAGGATTGTGACAATCTGGGGGTATTCATTGGTGATGAAGTTTCTATGAGTAGTAAAGACACTAGAAGCTGCAAAGAAATTGAACAAAGGATCTTGGAAGAGGAAGAGAACCTTGAAGTCAAGAGTGAGATCGTTGTGAAATACTCCCTCTTTAACGAAAAGGTGGGATTTCCTATCTTGGAAAGTTTGATCATCAAGGGGATAAGGGAGTTGAAGGCGATATGGCACGTCCAACAATCTCAAAACTCTTTTTGTAGACTCAAGCAAGTTAAGGTTCGGGAATGTGACAATCTAATAAGTTTGTTTCCGCCTAGTGTCATGAGAAGATTGGATACGCTGGAAACCTTGAATATACGGTACTGCAAATCACTAGAAGTGGTATGTGAGGAAATTGTTGTTGCAGAAGAGGAACAAGAAGTTGTAGTAACAACACCTTCTCCATTTGTATTTCCAAAAGTAACATCCGTGGAGTTGGGGAATCTACCTCAACTTACGGGTTGCATAAATGCTTCACAGTGGCCATCACTCAAACGATTGGAGGTGGAGGGATGTGATAAAGTGGGAATTTTTGCCACAGAATTTTCGATCTTTAGAAAGAAATATGAGATGGAGCCTCTAATGACTTCTCAAAAGCCTCTATTTCTAACCGACAAGGATTCGTTCCTCGACTTGGAATACTTATCATTGTTTGACATGGAAATTTGGGATGGACCACCCCCAGCGGATCAGTTGGTGTTTGGCAAATTAAAATCAATCTGCTTGTATGGCAATTGTGCACCTTTCTCCAAGCAAGCTTCGGTCCTTTTCCTCCAGAGATTACAAAATCTTGAAGAAATTAAAATGGGACTCAACTCTTACGAAAGAATTAGTGGTTGCACTACTATGGAAGAAATGCATGATGATGCAGTTGGGAGTGGGACCCTCCCCCGTGTAAGGAGTTTGACGCTGTTCCGTCCGGACCAACTGATGGATCTAGAGAACGACAACTCCCAATCACTACTTTTTCCAAATTTGGAAACCCTTGAGCTGTGGTTTTGTTCGAGATTAAAAAGTATAGAGTCATCCGCAATATCCTTCCGGAATCTTACAGCTTTGAAAGTATGGCATTGTGATGGATTTGAATATATAACAAGTTATTCAGTGGCTAAAAGCTTAGTGCAACTCAAAACATTGGAGGTGGCCTTCTGTCAAAGTGTTGTAGTGATAGTGGCAAGCAATGTGGGAGACGATGACGCTGATGATGCCCCTGGAAATGAGATTGTTTTCAGCCACTTGCAACATTTGACTCTATTTGATCTACCAAGGCTACAAGGCGTTTCCTCCGAAAATTGCACGGTCAAATTCCCATCCTCCGTGACCGTAAAAGTATATGAATGCCCGATCAAGTTGAAGATTTCCCCTGATGGGTTCCTACTAACAGTAATAGAGGATCAATGCGAGCAAAAAGGAGATGATGACATTGACAATGATGATGATGATCAACAGAAAAATGATGTTGAATCAGCTCGGAGAACTCCTAAAATATCATCAGAAGAGCCTGCTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1050

Amino Acids

118.47

Weight (kDa)

5.11

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 151 - 297 4.7e-22 NB-ARC domain
LRR_RPS2 PF23247 423 - 541 1e-15 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 579 - 657 1e-14 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 604 - 721 1e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 767 - 887 2e-06 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 891 - 995 8e-12 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 792
AccB7I CCANNNNNTGG 1 cut(s) 2572
AccI GTMKAC 1 cut(s) 1861
AccII CGCG 1 cut(s) 203
AccIII TCCGGA 2 cut(s) 2560, 2682
AciI CCGC 6 cut(s) 197, 1330, 1479, 1913, 2327, 2670
AclWI GGATC 4 cut(s) 1703, 2337, 2583, 3042
AcoI YGGCCR 1 cut(s) 2123
AcsI RAATTY 7 cut(s) 359, 810, 2169, 2183, 2304, 2614, 2945
AcuI CTGAAG 3 cut(s) 159, 546, 1205
AfaI GTAC 3 cut(s) 1300, 1410, 1964
AfiI CCNNNNNNNGG 4 cut(s) 2275, 2538, 2572, 3009
AflIII ACRYGT 1 cut(s) 1500
AhdI GACNNNNNGTC 1 cut(s) 291
AjiI CACGTC 3 cut(s) 822, 1395, 1834
AjnI CCWGG 5 cut(s) 423, 621, 713, 1545, 2851
AloI GAACNNNNNNTCC 2 cut(s) 2576, 2608
Alw21I GWGCWC 1 cut(s) 2383
Alw26I GTCTC 4 cut(s) 108, 266, 981, 2823
Alw44I GTGCAC 1 cut(s) 2379
AlwI GGATC 4 cut(s) 1703, 2337, 2583, 3042
Aor13HI TCCGGA 2 cut(s) 2560, 2682
AoxI GGCC 4 cut(s) 426, 1168, 2123, 2784
ApaLI GTGCAC 1 cut(s) 2379
ApeKI GCWGC 3 cut(s) 107, 909, 1674
ApoI RAATTY 7 cut(s) 359, 810, 2169, 2183, 2304, 2614, 2945
AseI ATTAAT 1 cut(s) 629
Asp700I GAANNNNTTC 2 cut(s) 630, 1536
AspS9I GGNCC 4 cut(s) 2315, 2404, 2523, 2563
AsuHPI GGTGA 4 cut(s) 167, 947, 1493, 1649
AvaII GGWCC 4 cut(s) 2315, 2404, 2523, 2563
BaeGI GKGCMC 1 cut(s) 2383
BalI TGGCCA 1 cut(s) 2125
BarI GAAGNNNNNNTAC 2 cut(s) 1921, 1953
BbsI GAAGAC 1 cut(s) 1491
Bbv12I GWGCWC 1 cut(s) 2383
BbvI GCAGC 3 cut(s) 94, 921, 1661
BccI CCATC 8 cut(s) 915, 2134, 2206, 2306, 2566, 2711, 2959, 3002
BceAI ACGGC 1 cut(s) 687
BcgI CGANNNNNNTGC 2 cut(s) 1329, 1363
BciT130I CCWGG 5 cut(s) 425, 623, 715, 1547, 2853
BciVI GTATCC 3 cut(s) 711, 1441, 1930
BclI TGATCA 2 cut(s) 1794, 3082
BcoDI GTCTC 4 cut(s) 108, 266, 981, 2823
BfaI CTAG 6 cut(s) 1551, 1668, 1917, 1976, 2579, 3151
BfuI GTATCC 3 cut(s) 711, 1441, 1930
BglII AGATCT 1 cut(s) 1190
BisI GCNGC 3 cut(s) 108, 910, 1675
BlsI GCNGC 3 cut(s) 109, 911, 1676
Bme1390I CCNGG 5 cut(s) 425, 623, 715, 1547, 2853
Bme18I GGWCC 4 cut(s) 2315, 2404, 2523, 2563
BmeRI GACNNNNNGTC 1 cut(s) 291
BmgBI CACGTC 3 cut(s) 822, 1395, 1834
BmgT120I GGNCC 4 cut(s) 2315, 2404, 2523, 2563
BmiI GGNNCC 4 cut(s) 2217, 2524, 2525, 3014
BmrFI CCNGG 5 cut(s) 425, 623, 715, 1547, 2853
BmsI GCATC 4 cut(s) 846, 1066, 2497, 2836
BpiI GAAGAC 1 cut(s) 1491
BpmI CTGGAG 1 cut(s) 2399
BpuEI CTTGAG 3 cut(s) 1115, 1850, 2648
BsaBI GATNNNNATC 1 cut(s) 3081
BsaJI CCNNGG 4 cut(s) 265, 2070, 2851, 2906
BsaWI WCCGGW 3 cut(s) 413, 2560, 2682
BsaXI ACNNNNNCTCC 8 cut(s) 75, 105, 1022, 1052, 2026, 2056, 2576, 2606
Bsc4I CCNNNNNNNGG 4 cut(s) 2275, 2538, 2572, 3009
Bse3DI GCAATG 1 cut(s) 2827
Bse8I GATNNNNATC 1 cut(s) 3081
BseAI TCCGGA 2 cut(s) 2560, 2682
BseBI CCWGG 5 cut(s) 425, 623, 715, 1547, 2853
BseDI CCNNGG 4 cut(s) 265, 2070, 2851, 2906
BseJI GATNNNNATC 1 cut(s) 3081
BseLI CCNNNNNNNGG 4 cut(s) 2275, 2538, 2572, 3009
BseMI GCAATG 1 cut(s) 2827
BseMII CTCAG 3 cut(s) 951, 992, 1185
BseRI GAGGAG 2 cut(s) 344, 531
BseSI GKGCMC 1 cut(s) 2383
BseXI GCAGC 3 cut(s) 94, 921, 1661
BseYI CCCAGC 1 cut(s) 2323
BsgI GTGCAG 2 cut(s) 844, 882
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 4 cut(s) 428, 1170, 2125, 2786
BsiHKAI GWGCWC 1 cut(s) 2383
BsiSI CCGG 3 cut(s) 414, 2561, 2683
BslFI GGGAC 3 cut(s) 798, 2463, 2536
BslI CCNNNNNNNGG 4 cut(s) 2275, 2538, 2572, 3009
BsmAI GTCTC 4 cut(s) 108, 266, 981, 2823
BsmBI CGTCTC 1 cut(s) 2823
BsmFI GGGAC 3 cut(s) 798, 2463, 2536
BsmI GAATGC 2 cut(s) 1015, 2984
BsnI GGCC 4 cut(s) 428, 1170, 2125, 2786
Bsp1286I GDGCHC 1 cut(s) 2383
Bsp13I TCCGGA 2 cut(s) 2560, 2682
Bsp1407I TGTACA 2 cut(s) 1298, 1408
Bsp19I CCATGG 1 cut(s) 265
BspACI CCGC 6 cut(s) 197, 1330, 1479, 1913, 2327, 2670
BspANI GGCC 4 cut(s) 428, 1170, 2125, 2786
BspCNI CTCAG 3 cut(s) 952, 991, 1186
BspEI TCCGGA 2 cut(s) 2560, 2682
BspFNI CGCG 1 cut(s) 203
BspHI TCATGA 1 cut(s) 1923
BspLI GGNNCC 4 cut(s) 2217, 2524, 2525, 3014
BspPI GGATC 4 cut(s) 1703, 2337, 2583, 3042
BspQI GCTCTTC 2 cut(s) 688, 3132
BsrDI GCAATG 1 cut(s) 2827
BsrGI TGTACA 2 cut(s) 1298, 1408
BssECI CCNNGG 4 cut(s) 265, 2070, 2851, 2906
BssT1I CCWWGG 2 cut(s) 265, 2906
Bst2UI CCWGG 5 cut(s) 425, 623, 715, 1547, 2853
Bst4CI ACNGT 8 cut(s) 289, 345, 573, 1962, 2121, 2941, 2965, 3025
Bst6I CTCTTC 6 cut(s) 688, 1181, 1698, 1704, 2004, 3132
BstAUI TGTACA 2 cut(s) 1298, 1408
BstC8I GCNNGC 9 cut(s) 246, 558, 700, 861, 952, 2397, 2818, 3044, 3144
BstDEI CTNAG 6 cut(s) 960, 978, 1194, 1207, 1336, 2758
BstDSI CCRYGG 2 cut(s) 265, 2070
BstFNI CGCG 1 cut(s) 203
BstMAI GTCTC 4 cut(s) 108, 266, 981, 2823
BstMWI GCNNNNNNNGC 4 cut(s) 209, 250, 2370, 2846
BstNI CCWGG 5 cut(s) 425, 623, 715, 1547, 2853
BstNSI RCATGY 1 cut(s) 1504
BstSCI CCNGG 5 cut(s) 423, 621, 713, 1545, 2851
BstSLI GKGCMC 1 cut(s) 2383
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 3 cut(s) 94, 921, 1661
BstV2I GAAGAC 1 cut(s) 1491
BstX2I RGATCY 3 cut(s) 1190, 1695, 2575
BstYI RGATCY 3 cut(s) 1190, 1695, 2575
BsuI GTATCC 3 cut(s) 711, 1441, 1930
BsuRI GGCC 4 cut(s) 428, 1170, 2125, 2786
BtgI CCRYGG 2 cut(s) 265, 2070
BtrI CACGTC 3 cut(s) 822, 1395, 1834
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 4 cut(s) 207, 350, 2126, 2751
Cac8I GCNNGC 9 cut(s) 246, 558, 700, 861, 952, 2397, 2818, 3044, 3144
CciI TCATGA 1 cut(s) 1923
Cfr13I GGNCC 4 cut(s) 2315, 2404, 2523, 2563
CseI GACGC 3 cut(s) 209, 2557, 2846
Csp6I GTAC 3 cut(s) 1299, 1409, 1963
CspCI CAANNNNNGTGG 4 cut(s) 61, 96, 2805, 2840
CviAII CATG 7 cut(s) 266, 463, 1080, 1501, 1924, 2299, 2501
CviQI GTAC 3 cut(s) 1299, 1409, 1963
DdeI CTNAG 6 cut(s) 960, 978, 1194, 1207, 1336, 2758
DraI TTTAAA 1 cut(s) 1371
DrdI GACNNNNNNGTC 1 cut(s) 792
DriI GACNNNNNGTC 1 cut(s) 291
DseDI GACNNNNNNGTC 1 cut(s) 792
EaeI YGGCCR 1 cut(s) 2123
Eam1104I CTCTTC 6 cut(s) 688, 1181, 1698, 1704, 2004, 3132
Eam1105I GACNNNNNGTC 1 cut(s) 291
EarI CTCTTC 6 cut(s) 688, 1181, 1698, 1704, 2004, 3132
EciI GGCGGA 1 cut(s) 1902
Eco130I CCWWGG 2 cut(s) 265, 2906
Eco147I AGGCCT 2 cut(s) 428, 1170
Eco32I GATATC 1 cut(s) 1306
Eco47I GGWCC 4 cut(s) 2315, 2404, 2523, 2563
Eco57I CTGAAG 3 cut(s) 159, 546, 1205
EcoO109I RGGNCCY 1 cut(s) 2523
EcoRII CCWGG 5 cut(s) 423, 621, 713, 1545, 2851
EcoRV GATATC 1 cut(s) 1306
EcoT14I CCWWGG 2 cut(s) 265, 2906
EcoT22I ATGCAT 2 cut(s) 1081, 2502
ErhI CCWWGG 2 cut(s) 265, 2906
Esp3I CGTCTC 1 cut(s) 2823
FaeI CATG 7 cut(s) 269, 466, 1083, 1504, 1927, 2302, 2504
FalI AAGNNNNNCTT 2 cut(s) 1701, 1733
FaqI GGGAC 3 cut(s) 798, 2463, 2536
FatI CATG 7 cut(s) 265, 462, 1079, 1500, 1923, 2298, 2500
FauNDI CATATG 1 cut(s) 1289
FbaI TGATCA 2 cut(s) 1794, 3082
FblI GTMKAC 1 cut(s) 1861
Fnu4HI GCNGC 3 cut(s) 108, 910, 1675
Fsp4HI GCNGC 3 cut(s) 108, 910, 1675
FspBI CTAG 6 cut(s) 1551, 1668, 1917, 1976, 2579, 3151
GluI GCNGC 3 cut(s) 108, 910, 1675
GsaI CCCAGC 1 cut(s) 2327
GsuI CTGGAG 1 cut(s) 2399
HaeIII GGCC 4 cut(s) 428, 1170, 2125, 2786
HapII CCGG 3 cut(s) 414, 2561, 2683
HgaI GACGC 3 cut(s) 209, 2557, 2846
Hin1II CATG 7 cut(s) 269, 466, 1083, 1504, 1927, 2302, 2504
HincII GTYRAC 1 cut(s) 819
HindII GTYRAC 1 cut(s) 819
HindIII AAGCTT 4 cut(s) 17, 558, 2397, 2755
HpaII CCGG 3 cut(s) 414, 2561, 2683
HphI GGTGA 4 cut(s) 167, 947, 1493, 1649
Hpy166II GTNNAC 4 cut(s) 550, 819, 1862, 2381
Hpy8I GTNNAC 4 cut(s) 550, 819, 1862, 2381
HpyAV CCTTC 9 cut(s) 385, 448, 926, 1160, 1469, 1813, 2049, 2689, 2797
HpyCH4III ACNGT 8 cut(s) 289, 345, 573, 1962, 2121, 2941, 2965, 3025
HpyCH4IV ACGT 4 cut(s) 821, 1394, 1428, 1833
HpyF10VI GCNNNNNNNGC 4 cut(s) 209, 250, 2370, 2846
HpyF3I CTNAG 6 cut(s) 960, 978, 1194, 1207, 1336, 2758
HpySE526I ACGT 4 cut(s) 821, 1394, 1428, 1833
Hsp92II CATG 7 cut(s) 269, 466, 1083, 1504, 1927, 2302, 2504
KflI GGGWCCC 1 cut(s) 2523
Kpn2I TCCGGA 2 cut(s) 2560, 2682
Ksp22I TGATCA 2 cut(s) 1794, 3082
LguI GCTCTTC 2 cut(s) 688, 3132
LmnI GCTCC 2 cut(s) 1449, 2215
Lsp1109I GCAGC 3 cut(s) 94, 921, 1661
LweI GCATC 4 cut(s) 846, 1066, 2497, 2836
MaeI CTAG 6 cut(s) 1551, 1668, 1917, 1976, 2579, 3151
MaeII ACGT 4 cut(s) 821, 1394, 1428, 1833
MaeIII GTNAC 5 cut(s) 1613, 1889, 2029, 2062, 2959
MfeI CAATTG 2 cut(s) 224, 2374
MflI RGATCY 3 cut(s) 1190, 1695, 2575
MhlI GDGCHC 1 cut(s) 2383
MlsI TGGCCA 1 cut(s) 2125
MluNI TGGCCA 1 cut(s) 2125
MlyI GAGTC 5 cut(s) 473, 1857, 2445, 2672, 2884
MmeI TCCRAC 3 cut(s) 753, 1300, 1861
Mox20I TGGCCA 1 cut(s) 2125
Mph1103I ATGCAT 2 cut(s) 1081, 2502
MroI TCCGGA 2 cut(s) 2560, 2682
MroXI GAANNNNTTC 2 cut(s) 630, 1536
MscI TGGCCA 1 cut(s) 2125
MslI CAYNNNNRTG 3 cut(s) 2486, 2505, 2715
Msp20I TGGCCA 1 cut(s) 2125
MspA1I CMGCKG 2 cut(s) 197, 2327
MspI CCGG 3 cut(s) 414, 2561, 2683
MspR9I CCNGG 5 cut(s) 425, 623, 715, 1547, 2853
MunI CAATTG 2 cut(s) 224, 2374
Mva1269I GAATGC 2 cut(s) 1015, 2984
MvaI CCWGG 5 cut(s) 425, 623, 715, 1547, 2853
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 4 cut(s) 209, 250, 2370, 2846
NcoI CCATGG 1 cut(s) 265
NdeI CATATG 1 cut(s) 1289
NlaIII CATG 7 cut(s) 269, 466, 1083, 1504, 1927, 2302, 2504
NlaIV GGNNCC 4 cut(s) 2217, 2524, 2525, 3014
NmuCI GTSAC 3 cut(s) 1613, 1889, 2959
NsiI ATGCAT 2 cut(s) 1081, 2502
NspI RCATGY 1 cut(s) 1504
PagI TCATGA 1 cut(s) 1923
PceI AGGCCT 2 cut(s) 428, 1170
PciI ACATGT 1 cut(s) 1500
PciSI GCTCTTC 2 cut(s) 688, 3132
PctI GAATGC 2 cut(s) 1015, 2984
PdmI GAANNNNTTC 2 cut(s) 630, 1536
PfeI GAWTC 7 cut(s) 434, 733, 742, 2083, 2261, 2686, 3104
PflMI CCANNNNNTGG 1 cut(s) 2572
PkrI GCNGC 3 cut(s) 109, 911, 1676
PleI GAGTC 5 cut(s) 473, 1857, 2445, 2671, 2884
PpsI GAGTC 5 cut(s) 473, 1857, 2445, 2671, 2884
PpuMI RGGWCCY 1 cut(s) 2523
PscI ACATGT 1 cut(s) 1500
PshBI ATTAAT 1 cut(s) 629
Psp5II RGGWCCY 1 cut(s) 2523
Psp6I CCWGG 5 cut(s) 423, 621, 713, 1545, 2851
PspFI CCCAGC 1 cut(s) 2323
PspGI CCWGG 5 cut(s) 423, 621, 713, 1545, 2851
PspN4I GGNNCC 4 cut(s) 2217, 2524, 2525, 3014
PspPI GGNCC 4 cut(s) 2315, 2404, 2523, 2563
PspPPI RGGWCCY 1 cut(s) 2523
PsuI RGATCY 3 cut(s) 1190, 1695, 2575
RsaI GTAC 3 cut(s) 1300, 1410, 1964
RsaNI GTAC 3 cut(s) 1299, 1409, 1963
RseI CAYNNNNRTG 3 cut(s) 2486, 2505, 2715
SapI GCTCTTC 2 cut(s) 688, 3132
SatI GCNGC 3 cut(s) 108, 910, 1675
Sau96I GGNCC 4 cut(s) 2315, 2404, 2523, 2563
SchI GAGTC 5 cut(s) 473, 1857, 2445, 2672, 2884
ScrFI CCNGG 5 cut(s) 425, 623, 715, 1547, 2853
SduI GDGCHC 1 cut(s) 2383
SfaNI GCATC 4 cut(s) 846, 1066, 2497, 2836
SinI GGWCC 4 cut(s) 2315, 2404, 2523, 2563
SmiMI CAYNNNNRTG 3 cut(s) 2486, 2505, 2715
SmlI CTYRAG 3 cut(s) 1130, 1865, 2627
SmoI CTYRAG 3 cut(s) 1130, 1865, 2627
SseBI AGGCCT 2 cut(s) 428, 1170
SsiI CCGC 6 cut(s) 197, 1330, 1479, 1913, 2327, 2670
SspI AATATT 4 cut(s) 1063, 1150, 1228, 1492
SspMI CTAG 6 cut(s) 1551, 1668, 1917, 1976, 2579, 3151
StuI AGGCCT 2 cut(s) 428, 1170
StyD4I CCNGG 5 cut(s) 423, 621, 713, 1545, 2851
StyI CCWWGG 2 cut(s) 265, 2906
TaaI ACNGT 8 cut(s) 289, 345, 573, 1962, 2121, 2941, 2965, 3025
TaiI ACGT 4 cut(s) 824, 1397, 1431, 1836
TaqI TCGA 6 cut(s) 177, 832, 1575, 2189, 2271, 2645
TaqII GACCGA 1 cut(s) 2392
TatI WGTACW 2 cut(s) 1298, 1408
TfiI GAWTC 7 cut(s) 434, 733, 742, 2083, 2261, 2686, 3104
TscAI CASTG 4 cut(s) 214, 350, 2126, 2751
TseFI GTSAC 3 cut(s) 1613, 1889, 2959
TseI GCWGC 3 cut(s) 107, 909, 1674
Tsp45I GTSAC 3 cut(s) 1613, 1889, 2959
TspDTI ATGAA 5 cut(s) 693, 1179, 1621, 1656, 2991
TspGWI ACGGA 6 cut(s) 403, 705, 1572, 2059, 2546, 2947
TspRI CASTG 4 cut(s) 214, 350, 2126, 2751
Van91I CCANNNNNTGG 1 cut(s) 2572
VneI GTGCAC 1 cut(s) 2379
VpaK11BI GGWCC 4 cut(s) 2315, 2404, 2523, 2563
VspI ATTAAT 1 cut(s) 629
XapI RAATTY 7 cut(s) 359, 810, 2169, 2183, 2304, 2614, 2945
XbaI TCTAGA 1 cut(s) 2578
XceI RCATGY 1 cut(s) 1504
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 1861
XmnI GAANNNNTTC 2 cut(s) 630, 1536
XspI CTAG 6 cut(s) 1551, 1668, 1917, 1976, 2579, 3151
Zsp2I ATGCAT 2 cut(s) 1081, 2502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.