MD08G1082300.v1.1

disease resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
6812449 .. 6825555
13107 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1082300.v1.1.491

Sequence Viewer

Length: 2421 bp
ATGAGCTGTCTCCGTGGGGTTTGTCCAAACCCAGTGCACCGTTACAAGCTAGGCAGGAGATCAACAAAGTTGGAGCGGGTGGTTGTTAACCTCTTCGCAAAAAAAGATTTCGCTAGCATTTCGTACAATGTCCGCCCACAAGATGTATCCGTGGTATCTGACAGACATTATGAGGCATTTGATTCGAGGACTTCAACTGTAAAGGAAATCATGGATGAACTGAGACTTCCTAATACCGACCTGATTTTGGTGTATGGTATTGGAGGCGTGGGGAAGACCACACTGGTTGAAGAAGTCCTTAGGCAAGCTGTAAAAGAAAAGTTATTTGCTGATGCGGTTATGGTAAGAAGTGTGCAAAATCCGAACCTTGAAGGAATTCAAAAAGAAATTGCCAGAAAGTTGGGTATGGAAGTTCAAGAAAGCGAAACTATGTCAGTAAGAGCACCTCGTCTATGTGACAGAGTAAAAGACAAGAATGTTCTTGTAATTTTAGACAACATTTGGGAAAGCATTGACTTGGAGGCGGTAGGACTTCCTTGTCTGCCGAATTGCAGAATACTTCTGACATCCAGAACTCGAAAACTGCTATCCTCAGAGATGCGGTCGCAAAAAGACTTTGAGCTTCGAGTTTTAAACGAGGAAGAAGCTTGGCATTTATTTGAGACGAAAGCAGGTGATGTTGTTAAAAATCCCGACATACGAACTGTGGCAACCGATGTAGCCGAAAAATGCGGAGGTTTGCCAGTTTTGGTTGTCACAGTCGCAAGCTCTTTAAGAAATACTAGTGCTTTACCAGTATGGAAGAATGCCTTGAGAAGCCTAAAAGCGTTTGACTACGAAGACTCAGCCCAACAAGAAGCATTCTCAGCTTTAGAGTGGAGTTACAATCAATTGGATGATCAAAAGCTTAAGCCACTATTCTTGATCTGTGGAATTTTTGTATATGATACGGGATACGCTGATCTGACAGACTTGTTGAAATGTACAATTGGTTTGGGTTTGTTTAAGAACATCGATTCAGTGGAGGACGCACGATATGCATTGTATGCGCGGATTGAAGAGCTTAAAGATTCTGGTCTGTTACTCGACTCCTATGACAATACATCAATCAGAATGCACGATTTGTTATGTGATGTTGCCATCAAGATTGCATCCAAAGGCCACCGTGCCTTACTAAGAGGAAACGGAGATGTCTTGAAGGAATGGCCAAACATTAAGGAGTTTTCTGAAAATTGCACAATGATCTCTTTGTCTTGCAATATCATCCCTGAGCTTCCTGAAGTTTTGAAATGCCAACAACTGGAGTATTTTTATTTGAACGTTGATGGTGAGTTGCTTGAAATCCCAGGTAACTTCTTTGAGGAGATGAAAGAGCTTAAAGTTATGGATTTAACCGATGCGCGTATTTCGTCGCTGCCTCCATCTCTTCTTCTCCTACGAAATCTTCGGACATTGTGTTTGGATAGTTGCGTGTTGGGAGACGTAGCTCTAGTCGGACAGCTATCGCAACTAGAAATTCTCAGCTTTATGTATTCTACGTTTAAAAAGTTGCCTGAAGAAATAGGGAAATTGACTCGTCTTCGACTGCTGGATTTAAAGGGCTGCTATGGTCTCGAAGTGATTTCACCTAATGTTATATCACGTTTGACAAGTCTGGAAGACTTGAGAATGAAAGAGAGCTTCAACGGATGGGTGCCCGAAGGAGTAAGCGGAGAAAGAAGTAATGCTAGCCTTTCAGAACTGAAGGACTTGCCTCATTTAGCTGCATTAAGCATACATATTCCAGATGCTGGCAGTATTCCGACGGACTTGTTCACTGACAAGTTAAAAAGATACCAAGTATTAATCGGTGCTTGGTGGGAATCGGATGATGAGGATGAAACCCTCAACTCATTGACGCTTTACGAAATGCGGGAGTTGCTGTATCTACGCAACGAGAATTTCCCAGGGGCAGGCCCAGTTTTTCCAAACTTGGAAGTTCTGCGAGTGGTGGTATGTCCAGAATTGAAGGAGATAGGGTCATCAGCTATTCCCTTCAAGAATTTAACAACTTTGGAAGTATATGGTTGTCACAGCTTGAAATATTTAGCAACATATACGATAGCCAAAACTTTAAAGCGGCTAAGAACAATGACGGTTGGGGGCTGTGAAAGAATGAGAGAAATAGGGGCAACGACATCAGATGGAGATGATGCAGGAAATGATGGTGAGATTTCTTTTTGCCAGTTGCAAAGTTTGCAACTTTTCTCTCTACCAAGTCTGCAAGATTTCTTCTCTGGAAATTGCATTGTCAAATTCCCATGCTTGAAAACTGTAAATATATATGAATGCCCTAAGTTGAAGATCAACAGCTCTGAGTGGAAGAGTTCCCCAGAACTACAAGGAGTGCGGATAACAGAACATTATGTGCGGTGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

807

Amino Acids

90.8

Weight (kDa)

5.3

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 64 - 225 1.4e-27 NB-ARC domain
AAA_16 PF13191 65 - 141 2.9e-06 AAA ATPase domain
LRR_14 PF23598 498 - 597 1.9e-08 Leucine-rich repeat region
LRR_RPS2 PF23247 679 - 781 1.2e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 662
AasI GACNNNNNNGTC 1 cut(s) 537
Acc36I ACCTGC 1 cut(s) 662
AccB1I GGYRCC 1 cut(s) 1693
AccB7I CCANNNNNTGG 2 cut(s) 1300, 1790
AccBSI CCGCTC 1 cut(s) 76
AccII CGCG 2 cut(s) 1051, 1402
AclI AACGTT 1 cut(s) 1320
AcoI YGGCCR 2 cut(s) 1205, 2414
AcsI RAATTY 6 cut(s) 375, 933, 1515, 1939, 2041, 2294
AcuI CTGAAG 3 cut(s) 1299, 1575, 1763
AfaI GTAC 2 cut(s) 125, 985
AfiI CCNNNNNNNGG 4 cut(s) 247, 1300, 1790, 1952
AflII CTTAAG 1 cut(s) 908
AhlI ACTAGT 1 cut(s) 782
AjnI CCWGG 2 cut(s) 1345, 1945
Alw21I GWGCWC 2 cut(s) 39, 445
Alw26I GTCTC 5 cut(s) 14, 217, 656, 1473, 1616
Alw44I GTGCAC 1 cut(s) 35
AlwNI CAGNNNCTG 1 cut(s) 1790
AoxI GGCC 4 cut(s) 1159, 1205, 1954, 2414
ApaLI GTGCAC 1 cut(s) 35
ApeKI GCWGC 3 cut(s) 1414, 1602, 1763
ApoI RAATTY 6 cut(s) 375, 933, 1515, 1939, 2041, 2294
ArsI GACNNNNNNTTYG 2 cut(s) 1441, 1473
AseI ATTAAT 1 cut(s) 1844
Asp700I GAANNNNTTC 1 cut(s) 375
AspLEI GCGC 2 cut(s) 1051, 1402
AspS9I GGNCC 1 cut(s) 1955
AsuHPI GGTGA 4 cut(s) 686, 1340, 1617, 2219
AsuNHI GCTAGC 2 cut(s) 113, 1727
AxyI CCTNAGG 1 cut(s) 299
BaeGI GKGCMC 2 cut(s) 39, 1698
BalI TGGCCA 2 cut(s) 1207, 2416
BanI GGYRCC 1 cut(s) 1693
BbsI GAAGAC 4 cut(s) 281, 846, 1571, 1665
Bbv12I GWGCWC 2 cut(s) 39, 445
BbvI GCAGC 3 cut(s) 1401, 1589, 1750
BccI CCATC 6 cut(s) 1148, 1319, 1429, 1683, 2177, 2198
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BciT130I CCWGG 2 cut(s) 1347, 1947
BciVI GTATCC 2 cut(s) 157, 947
BclI TGATCA 1 cut(s) 898
BcoDI GTCTC 5 cut(s) 14, 217, 656, 1473, 1616
BcuI ACTAGT 1 cut(s) 782
BfaI CTAG 6 cut(s) 50, 114, 783, 1490, 1511, 1728
BfrI CTTAAG 1 cut(s) 908
BfuAI ACCTGC 1 cut(s) 662
BfuI GTATCC 2 cut(s) 157, 947
BisI GCNGC 4 cut(s) 1415, 1603, 1764, 2120
BlsI GCNGC 4 cut(s) 1416, 1604, 1765, 2121
Bme1390I CCNGG 2 cut(s) 1347, 1947
BmgT120I GGNCC 1 cut(s) 1955
BmiI GGNNCC 1 cut(s) 1695
BmrFI CCNGG 2 cut(s) 1347, 1947
BmrI ACTGGG 2 cut(s) 26, 1952
BmsI GCATC 6 cut(s) 322, 588, 1160, 1387, 1777, 2182
BmtI GCTAGC 2 cut(s) 117, 1731
BmuI ACTGGG 2 cut(s) 26, 1952
BpiI GAAGAC 4 cut(s) 281, 846, 1571, 1665
BpmI CTGGAG 1 cut(s) 1322
Bpu10I CCTNAGC 1 cut(s) 1269
BpuEI CTTGAG 2 cut(s) 832, 1684
Bsa29I ATCGAT 1 cut(s) 1014
BsaI GGTCTC 1 cut(s) 1616
BsaJI CCNNGG 5 cut(s) 13, 150, 1345, 1945, 1946
BsaXI ACNNNNNCTCC 4 cut(s) 1907, 1937, 2003, 2033
Bsc4I CCNNNNNNNGG 4 cut(s) 247, 1300, 1790, 1952
Bse1I ACTGG 7 cut(s) 32, 288, 743, 794, 1305, 1958, 2224
Bse21I CCTNAGG 1 cut(s) 299
BseBI CCWGG 2 cut(s) 1347, 1947
BseCI ATCGAT 1 cut(s) 1014
BseDI CCNNGG 5 cut(s) 13, 150, 1345, 1945, 1946
BseGI GGATG 8 cut(s) 220, 566, 901, 1151, 1263, 1694, 1873, 1882
BseLI CCNNNNNNNGG 4 cut(s) 247, 1300, 1790, 1952
BseMII CTCAG 7 cut(s) 212, 606, 858, 879, 1260, 1534, 2346
BseNI ACTGG 7 cut(s) 32, 288, 743, 794, 1305, 1958, 2224
BseRI GAGGAG 1 cut(s) 1376
BseSI GKGCMC 2 cut(s) 39, 1698
BseXI GCAGC 3 cut(s) 1401, 1589, 1750
Bsh1236I CGCG 2 cut(s) 1051, 1402
Bsh1285I CGRYCG 1 cut(s) 605
BshFI GGCC 4 cut(s) 1161, 1207, 1956, 2416
BshNI GGYRCC 1 cut(s) 1693
BshVI ATCGAT 1 cut(s) 1014
BsiEI CGRYCG 1 cut(s) 605
BsiHKAI GWGCWC 2 cut(s) 39, 445
BslI CCNNNNNNNGG 4 cut(s) 247, 1300, 1790, 1952
BsmAI GTCTC 5 cut(s) 14, 217, 656, 1473, 1616
BsmBI CGTCTC 2 cut(s) 656, 1473
BsmI GAATGC 4 cut(s) 811, 860, 1119, 2333
BsnI GGCC 4 cut(s) 1161, 1207, 1956, 2416
Bso31I GGTCTC 1 cut(s) 1616
Bsp1286I GDGCHC 3 cut(s) 39, 445, 1698
Bsp1407I TGTACA 1 cut(s) 983
Bsp143I GATC 6 cut(s) 59, 898, 924, 961, 1242, 2343
BspANI GGCC 4 cut(s) 1161, 1207, 1956, 2416
BspCNI CTCAG 7 cut(s) 213, 605, 857, 878, 1261, 1533, 2347
BspDI ATCGAT 1 cut(s) 1014
BspFNI CGCG 2 cut(s) 1051, 1402
BspLI GGNNCC 1 cut(s) 1695
BspMI ACCTGC 1 cut(s) 662
BspOI GCTAGC 2 cut(s) 117, 1731
BspQI GCTCTTC 1 cut(s) 1053
BspT107I GGYRCC 1 cut(s) 1693
BspTI CTTAAG 1 cut(s) 908
BspTNI GGTCTC 1 cut(s) 1616
BsrBI CCGCTC 1 cut(s) 76
BsrGI TGTACA 1 cut(s) 983
BsrI ACTGG 7 cut(s) 32, 288, 743, 794, 1305, 1958, 2224
BssECI CCNNGG 5 cut(s) 13, 150, 1345, 1945, 1946
BssMI GATC 6 cut(s) 59, 898, 924, 961, 1242, 2343
Bst2UI CCWGG 2 cut(s) 1347, 1947
Bst4CI ACNGT 7 cut(s) 41, 199, 706, 760, 1166, 2137, 2314
Bst6I CTCTTC 4 cut(s) 98, 1053, 1431, 2357
BstAFI CTTAAG 1 cut(s) 908
BstAPI GCANNNNNTGC 3 cut(s) 1037, 1046, 2236
BstAUI TGTACA 1 cut(s) 983
BstC8I GCNNGC 6 cut(s) 115, 306, 766, 1729, 1792, 1954
BstDSI CCRYGG 2 cut(s) 13, 150
BstF5I GGATG 8 cut(s) 220, 566, 901, 1151, 1263, 1694, 1873, 1882
BstFNI CGCG 2 cut(s) 1051, 1402
BstHHI GCGC 2 cut(s) 1051, 1402
BstKTI GATC 6 cut(s) 62, 901, 927, 964, 1245, 2346
BstMAI GTCTC 5 cut(s) 14, 217, 656, 1473, 1616
BstMBI GATC 6 cut(s) 59, 898, 924, 961, 1242, 2343
BstMCI CGRYCG 1 cut(s) 605
BstMWI GCNNNNNNNGC 5 cut(s) 866, 1037, 1046, 1918, 2236
BstNI CCWGG 2 cut(s) 1347, 1947
BstSCI CCNGG 2 cut(s) 1345, 1945
BstSLI GKGCMC 2 cut(s) 39, 1698
BstUI CGCG 2 cut(s) 1051, 1402
BstV1I GCAGC 3 cut(s) 1401, 1589, 1750
BstV2I GAAGAC 4 cut(s) 281, 846, 1571, 1665
BstXI CCANNNNNNTGG 1 cut(s) 400
Bsu15I ATCGAT 1 cut(s) 1014
Bsu36I CCTNAGG 1 cut(s) 299
BsuI GTATCC 2 cut(s) 157, 947
BsuRI GGCC 4 cut(s) 1161, 1207, 1956, 2416
BsuTUI ATCGAT 1 cut(s) 1014
BtgI CCRYGG 2 cut(s) 13, 150
BtsCI GGATG 8 cut(s) 220, 566, 901, 1151, 1263, 1694, 1873, 1882
BtsIMutI CAGTG 4 cut(s) 39, 281, 1026, 1815
BveI ACCTGC 1 cut(s) 662
Cac8I GCNNGC 6 cut(s) 115, 306, 766, 1729, 1792, 1954
CaiI CAGNNNCTG 1 cut(s) 1790
CfoI GCGC 2 cut(s) 1051, 1402
Cfr13I GGNCC 1 cut(s) 1955
ClaI ATCGAT 1 cut(s) 1014
CseI GACGC 2 cut(s) 1037, 1906
Csp6I GTAC 2 cut(s) 124, 984
CspCI CAANNNNNGTGG 4 cut(s) 268, 303, 903, 938
CviAII CATG 3 cut(s) 211, 2301, 2418
CviQI GTAC 2 cut(s) 124, 984
DpnI GATC 6 cut(s) 61, 900, 926, 963, 1244, 2345
DpnII GATC 6 cut(s) 59, 898, 924, 961, 1242, 2343
DraI TTTAAA 4 cut(s) 633, 1543, 1596, 2115
DrdI GACNNNNNNGTC 1 cut(s) 537
DseDI GACNNNNNNGTC 1 cut(s) 537
EaeI YGGCCR 2 cut(s) 1205, 2414
Eam1104I CTCTTC 4 cut(s) 98, 1053, 1431, 2357
EarI CTCTTC 4 cut(s) 98, 1053, 1431, 2357
EciI GGCGGA 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 1616
Eco57I CTGAAG 3 cut(s) 1299, 1575, 1763
Eco81I CCTNAGG 1 cut(s) 299
EcoRI GAATTC 1 cut(s) 375
EcoRII CCWGG 2 cut(s) 1345, 1945
EcoT22I ATGCAT 1 cut(s) 1042
Esp3I CGTCTC 2 cut(s) 656, 1473
FaeI CATG 3 cut(s) 214, 2304, 2421
FalI AAGNNNNNCTT 4 cut(s) 282, 314, 794, 826
FatI CATG 3 cut(s) 210, 2300, 2417
FauI CCCGC 2 cut(s) 69, 1905
FbaI TGATCA 1 cut(s) 898
Fnu4HI GCNGC 4 cut(s) 1415, 1603, 1764, 2120
FokI GGATG 8 cut(s) 227, 553, 908, 1138, 1250, 1701, 1880, 1889
Fsp4HI GCNGC 4 cut(s) 1415, 1603, 1764, 2120
FspBI CTAG 6 cut(s) 50, 114, 783, 1490, 1511, 1728
GlaI GCGC 2 cut(s) 1050, 1401
GluI GCNGC 4 cut(s) 1415, 1603, 1764, 2120
GsuI CTGGAG 1 cut(s) 1322
HaeIII GGCC 4 cut(s) 1161, 1207, 1956, 2416
HgaI GACGC 2 cut(s) 1037, 1906
HhaI GCGC 2 cut(s) 1051, 1402
Hin1II CATG 3 cut(s) 214, 2304, 2421
Hin6I GCGC 2 cut(s) 1049, 1400
HinP1I GCGC 2 cut(s) 1049, 1400
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 2 cut(s) 645, 905
HinfI GANTC 7 cut(s) 182, 842, 1016, 1070, 1088, 1573, 1862
HpaI GTTAAC 1 cut(s) 88
HphI GGTGA 4 cut(s) 686, 1340, 1617, 2219
Hpy166II GTNNAC 3 cut(s) 37, 88, 1815
Hpy8I GTNNAC 3 cut(s) 37, 88, 1815
Hpy99I CGWCG 2 cut(s) 1414, 1807
HpyAV CCTTC 6 cut(s) 365, 1192, 1694, 1738, 2002, 2044
HpyCH4III ACNGT 7 cut(s) 41, 199, 706, 760, 1166, 2137, 2314
HpyCH4IV ACGT 4 cut(s) 1320, 1482, 1538, 1642
HpyF10VI GCNNNNNNNGC 5 cut(s) 866, 1037, 1046, 1918, 2236
HpySE526I ACGT 4 cut(s) 1320, 1482, 1538, 1642
Hsp92II CATG 3 cut(s) 214, 2304, 2421
HspAI GCGC 2 cut(s) 1049, 1400
Ksp22I TGATCA 1 cut(s) 898
KspAI GTTAAC 1 cut(s) 88
Kzo9I GATC 6 cut(s) 59, 898, 924, 961, 1242, 2343
LguI GCTCTTC 1 cut(s) 1053
LmnI GCTCC 1 cut(s) 73
Lsp1109I GCAGC 3 cut(s) 1401, 1589, 1750
LweI GCATC 6 cut(s) 322, 588, 1160, 1387, 1777, 2182
MaeI CTAG 6 cut(s) 50, 114, 783, 1490, 1511, 1728
MaeII ACGT 4 cut(s) 1320, 1482, 1538, 1642
MaeIII GTNAC 7 cut(s) 41, 455, 754, 881, 1080, 1349, 2069
MalI GATC 6 cut(s) 61, 900, 926, 963, 1244, 2345
MbiI CCGCTC 1 cut(s) 76
MboI GATC 6 cut(s) 59, 898, 924, 961, 1242, 2343
MfeI CAATTG 2 cut(s) 890, 987
MhlI GDGCHC 3 cut(s) 39, 445, 1698
MlsI TGGCCA 2 cut(s) 1207, 2416
MluNI TGGCCA 2 cut(s) 1207, 2416
MlyI GAGTC 3 cut(s) 836, 1082, 1567
MmeI TCCRAC 3 cut(s) 51, 1474, 1826
Mox20I TGGCCA 2 cut(s) 1207, 2416
Mph1103I ATGCAT 1 cut(s) 1042
MroXI GAANNNNTTC 1 cut(s) 375
MscI TGGCCA 2 cut(s) 1207, 2416
Msp20I TGGCCA 2 cut(s) 1207, 2416
MspCI CTTAAG 1 cut(s) 908
MspR9I CCNGG 2 cut(s) 1347, 1947
MunI CAATTG 2 cut(s) 890, 987
Mva1269I GAATGC 4 cut(s) 811, 860, 1119, 2333
MvaI CCWGG 2 cut(s) 1347, 1947
MvnI CGCG 2 cut(s) 1051, 1402
MwoI GCNNNNNNNGC 5 cut(s) 866, 1037, 1046, 1918, 2236
NdeII GATC 6 cut(s) 59, 898, 924, 961, 1242, 2343
NheI GCTAGC 2 cut(s) 113, 1727
NlaIII CATG 3 cut(s) 214, 2304, 2421
NlaIV GGNNCC 1 cut(s) 1695
NmuCI GTSAC 3 cut(s) 455, 754, 2069
NsiI ATGCAT 1 cut(s) 1042
PaqCI CACCTGC 1 cut(s) 662
PasI CCCWGGG 1 cut(s) 1946
PciSI GCTCTTC 1 cut(s) 1053
PctI GAATGC 4 cut(s) 811, 860, 1119, 2333
PdmI GAANNNNTTC 1 cut(s) 375
PfeI GAWTC 4 cut(s) 182, 1016, 1070, 1862
PflMI CCANNNNNTGG 2 cut(s) 1300, 1790
PkrI GCNGC 4 cut(s) 1416, 1604, 1765, 2121
PleI GAGTC 3 cut(s) 836, 1082, 1567
PpsI GAGTC 3 cut(s) 836, 1082, 1567
PshBI ATTAAT 1 cut(s) 1844
Psp1406I AACGTT 1 cut(s) 1320
Psp6I CCWGG 2 cut(s) 1345, 1945
PspGI CCWGG 2 cut(s) 1345, 1945
PspN4I GGNNCC 1 cut(s) 1695
PspPI GGNCC 1 cut(s) 1955
PstNI CAGNNNCTG 1 cut(s) 1790
RsaI GTAC 2 cut(s) 125, 985
RsaNI GTAC 2 cut(s) 124, 984
SapI GCTCTTC 1 cut(s) 1053
SatI GCNGC 4 cut(s) 1415, 1603, 1764, 2120
Sau3AI GATC 6 cut(s) 59, 898, 924, 961, 1242, 2343
Sau96I GGNCC 1 cut(s) 1955
SchI GAGTC 3 cut(s) 836, 1082, 1567
ScrFI CCNGG 2 cut(s) 1347, 1947
SduI GDGCHC 3 cut(s) 39, 445, 1698
SfaNI GCATC 6 cut(s) 322, 588, 1160, 1387, 1777, 2182
SmlI CTYRAG 3 cut(s) 811, 908, 1663
SmoI CTYRAG 3 cut(s) 811, 908, 1663
SpeI ACTAGT 1 cut(s) 782
SspI AATATT 1 cut(s) 2084
SspMI CTAG 6 cut(s) 50, 114, 783, 1490, 1511, 1728
StyD4I CCNGG 2 cut(s) 1345, 1945
TaaI ACNGT 7 cut(s) 41, 199, 706, 760, 1166, 2137, 2314
TaiI ACGT 4 cut(s) 1323, 1485, 1541, 1645
TaqI TCGA 7 cut(s) 185, 577, 625, 1014, 1086, 1582, 1614
TatI WGTACW 1 cut(s) 983
TauI GCSGC 1 cut(s) 2122
TfiI GAWTC 4 cut(s) 182, 1016, 1070, 1862
TscAI CASTG 4 cut(s) 39, 288, 1026, 1822
TseFI GTSAC 3 cut(s) 455, 754, 2069
TseI GCWGC 3 cut(s) 1414, 1602, 1763
Tsp45I GTSAC 3 cut(s) 455, 754, 2069
TspDTI ATGAA 5 cut(s) 231, 1382, 1685, 1893, 2340
TspGWI ACGGA 4 cut(s) 139, 1200, 1701, 1820
TspRI CASTG 4 cut(s) 39, 288, 1026, 1822
Van91I CCANNNNNTGG 2 cut(s) 1300, 1790
Vha464I CTTAAG 1 cut(s) 908
VneI GTGCAC 1 cut(s) 35
VspI ATTAAT 1 cut(s) 1844
XapI RAATTY 6 cut(s) 375, 933, 1515, 1939, 2041, 2294
XmnI GAANNNNTTC 1 cut(s) 375
XspI CTAG 6 cut(s) 50, 114, 783, 1490, 1511, 1728
Zsp2I ATGCAT 1 cut(s) 1042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.