Rw0G021470

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00989
OG0000042
Physical Location & Seq
Reverse (-)
50651 .. 64649
13999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G021470.1

Sequence Viewer

Length: 4008 bp
ATGGACCATCGTGAGAATGAGACAGAAGCTGGAAGAGCACGCCATTTGTGTGACAGGATAAAAGGCAAGAAGATGCTTCTAATTTTAGATGATGTATGGGAAAGTATTGACTTGGAGGCTGTGGGGCTTCCTCGCTTGTCCCCTCTTAAAATACTTTTGACATCACGGAGTCGAATAGTATTATCTTCTGATATGGGTACAGAAAAAGAGTTTCCTCTTGACGTTTTAGACGAAAAAGAAACTTGGACTTTGTTTGAGAAGATGTCGGGTGAGATTGTTAAGAATGCTGCTATACAAAGTATAGCAACCGAAATAGCCAAAAGGTGTGGAGGTTTGCCGGTATTGGTTGTTACAGTTGCAAGAGCTCTAAAAAATGGTACAATACATGAATGGAAAGATGCCCTCAGACGCCTAAAAAAGTTCGATGGACAAGGATTGACAGAGAAAGCATACTCTGCTATTGAGTGGAGTTACAGTAAATTGGATAATGAGGAGCTTAAGTCACTGTTCTTACTCTCTGCAATTTTGGTTGGGACCATGAACACTGTTTATTTCATGGACTTGTTGGAATACGGTATAGGTTTGAGTTTGTTTAAAAATGTTGATACAATAGAAGAAGCACGGGATGCACTGCATTCATTTCTTGAACAACTTAAAAAATCTTGTTTATTGCTAGACAATGCTGATAATTCTTTGGTTAGAATGCATGATTTTGTACAAGATGTTGCCAAATGGATTGCTTTTAAACATAACTATGTGTTATCAGTAGATCATGGAAGTGAGTTAAAAGAATGGCCAGATAAAGATTTCTCTGAAAAGTGCACTATGATCTCTCTTAAGGAATGCAATATTCCCAAGCTTCCAGAAGTTTTGCACTGCCAAGAACTATCTATGTTTCATTTAGACAGTTGTACTACAGATGATTCCTCCTGGGAAATTCCATGTGACTTTTTTGAAGAGATGAAGAAACTCAGGGTATTGGATTTAACTCGTCTGTGTATCCCATCTCTACCTCCATCTCTTAGAGTCTTAAAAAGTCTTCAGACATTATGCTTGGATGTGTGCACCTTGGGAGATATTTCTCTAGTTGGAGAGCTACGGAACATAGAAATTCTTAGCCTTATACATTCTAAATTTCAACAATTACCCAAAAATATAGGGCAATTGACTCGTCTACGACTGTTGGACTTGACTGGCTGCTCACAACTCAAAGTAATTTCACCTAATGTCATTTCAAGGCTGAAAAGACTAGAAGAGTTGAGAATTGGAAAAAATAGCTTTAACCAGTGGGAGGCTGAAGGAGTCACCAGTACAGAAAGAAGTAATGCTAACCTTGAAGAGCTAAAGCACTTGCCTCAGCTAACTGCATTACAAATACACATTCCAGATGCTAACACTCTTCCAAAAGATTTGTTCTCAGATAAGCTAGAAAGATACCAAATATGTATTGGTTCTGCATGGAAATGGGCTGATGTCGATGAAACCTTCAATGCACTAAAGCTTCAGCTTACTATCAGCAATGAAGTGGACCAAGGTCTAAGAATGTTGTTGAAAAGAACTGAAGACTTGTATTTGGAGGGTATTGAGGGTGTTAACAACAGGTTTTTCCATGAATTAGCTACTGAAGATTATCATCAATTGAAACATCTACATATCCACAACAATGTTGAATTTTTATATATCATTCATGGGAAGATTGGTCTTCCAAACTTAACATGGTTGGCGATTAGTGAACTCAACAATTCAAGATTCTTGTTATCATCTTCAATGGCTAAAAGTCTTTCACAGCTCAGACGTCTTCAGATATCCGGATGTCAATTTTTGGAAGAGATAGTTTCAATAGAAGAATCTGATGAAGAAATTGAAGAGAACATGTTTTGCCAGCTGCAAGATCCAGAGCTAAAAGGACTTCCAAACCTCACTAAATTCTGCTCAAGAAGTTATGTTGAATTACCAAATTTGTCATCTGAGATATTGGAATCAGAGGATTGTTCTAAAAGTAATACAATCTGCGAAGAAATTACAGAGACTGACTCAAAGGGAAACCTTGACATTGTCATACGACACTTTCTCTTTGACAATAAGGTAGAGTTTCCGTACTTGAAGAAGTTATCCATCCATGGCCTAGCAAAATTGACGACAATATGGAACAATCAATTTTCTCTAGAGAGTTCAAAAAATCTAGAGACAATAGAAATTGTTTCATGCTACAGTTTGAAAAGCATTTTTCCAGCCTCAGTGGCCACAAGTCTTCAACAGTTGAGGAGTCTGAAAGTGCAGAATTGTGGGGTGGAGGAAATCGTCTCGAAAGAAGATGGTGTACTAACTACACCTATTTTTAATTCATTCCCCAACGTGGAAACTTTGGGCTTGGAGATTTGGGATAGTTCGACACTCCACTACTTTAAGAAGCTATACTGCCTTTATATTTATGCACATACCAACTCATCTTTGAATTCTCTAGAGAAATTACTTGGTCTTGAAAAAGTCAATGGAGAAATACATGCAGTTGGGGAGGAGAGCCTCCCACATTTAAGAGATTTGCACCTTTACGGGATGCGGAAGCTAATGAATCTTGGGGAGGATAGCTTCGGACCATTATACCCATATTTTCCAAATCTGGAAATTCTGAAGCTAGAGGACTGTGATAGCTTAAAGAATTTAAGATCATCCGCAATATCCTTCAAGCATCTAAGAACTTTGCAAGTAAGTCGTTCTAAGGGATTGAAATACTTGATATCTTACTCCATGGCCAAAAGTTTGACGCAACTCACAAAACTGGAAGTCCAGGATTGTGAGGAAATGATAGAAATGGTGGGGAGCAATGAAAATGATGATTCAGAAAATGAGATTGAATTCAGGGTGTTGAAACATTTGGAACTTTCTTCTCTACCAAGTCTGAGAGGCTTTTGCTCGGGAACTCGCATTGTCAAATTTCCATCCTTAGAGAAATTATCCATGAGTTGTACTCAACTGGAGATGTTCATCTTTGATTCTATGGGTAAAAATGTATTTGAACTTGGAGGAATTGATGTTAGAGGAACACATGACACGTCAGCTGCAACTCAGCTGAGATCTTGTGACTGTCAAAATCTAGAATCAGTTGAAATTGATTCTTGTGAGAATTTGAAAAACATTTTCCCTGTTTCAGTGGCTAGAAACCTTCGACAGTTAACAAGGCTGATAGTGATGAACTGTGGAGTGGAGGAAATCATTGCAAGAGAGGAGGGACTACAAACAGCACCTAAGTTTGTGTTTCCAAAAGTAACAAAAGTGATTTTTAGGAATATGTCCCAACTCATGAATTTCTACCCAGGGATGCATGTGTCCGTCTGGCCATCACTTAATGACTTGAGGGTGGTACAATGTGCTAAAGTCAAAGTGTTTGCCGAGGAAATCTCAAATTTTCAGGGATATAATGAGTCGGAACGTCTCAGTGTTCTTATCCCGCAGTCTCTCTTTTTAATTGAGAAGATTTGTTCACCAAATTATTGCCCAAGGCCACATTTGAGAAACATGTGTATTTTTTGTCCCACAGGGTTTTTATTATTACTTGACAAGGTTTTTAGTGAGGCAACAACTCATGCACCATTTCGAAAAACATATTGTGTGCCTTCGTCAAAGCAACTGACGGAGAGGGAATCAAGGAATCAACGATTACCATCAATCAGCACAATTAAAGATCAATCAGCATTCAATGTATTTAATGTAATTCATATTTTCGTTGATGCCCATGAAACAAGTCTGAGCTTTTTCACTTTTCATCGATTATGCTCTTTGTTAACGTATATTTATATACAAGCTAAGTTCAATTGCACCCATCAAAGTGTTTCTTTTGTCATTGTTAACATCTGCTTCTTCTTTCTCTCTCTTTTTCTTATTTTCCGCACCGTACACGTGGTGCGGCTACCCGTTAATGCTTCTAGTCCATTTAGTCTGTTTTCTGTCAAGTATGGTCCATGTTTTTCTTCTCAGAAAGTTGACATCCATACAGTATCATGCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1335

Amino Acids

152.21

Weight (kDa)

5.8

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 4 - 89 3.4e-14 NB-ARC domain
LRR_14 PF23598 279 - 479 1.2e-12 Leucine-rich repeat region
LRR_RPS2 PF23247 558 - 656 1.6e-08 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 672 - 763 4.6e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 889 - 1012 9.3e-13 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1027 - 1067 2.7e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1798
AccI GTMKAC 1 cut(s) 1174
AccIII TCCGGA 1 cut(s) 1808
AciI CCGC 5 cut(s) 2560, 2673, 3449, 3886, 3904
AclWI GGATC 1 cut(s) 1886
AcoI YGGCCR 4 cut(s) 794, 2241, 2751, 3335
AcuI CTGAAG 7 cut(s) 1025, 1317, 1487, 1581, 1644, 1784, 2651
AcvI CACGTG 1 cut(s) 3898
AcyI GRCGYC 2 cut(s) 409, 1795
AdeI CACNNNGTG 1 cut(s) 3901
AfiI CCNNNNNNNGG 2 cut(s) 1291, 2356
AflII CTTAAG 2 cut(s) 497, 836
AflIII ACRYGT 4 cut(s) 1872, 3051, 3516, 3895
AjiI CACGTC 1 cut(s) 3054
AjnI CCWGG 3 cut(s) 929, 2787, 3313
Alw21I GWGCWC 4 cut(s) 40, 367, 824, 1067
Alw26I GTCTC 6 cut(s) 14, 2021, 2180, 2308, 3437, 3459
Alw44I GTGCAC 2 cut(s) 820, 1063
AlwI GGATC 1 cut(s) 1886
AlwNI CAGNNNCTG 2 cut(s) 29, 2030
Ama87I CYCGRG 1 cut(s) 2914
Aor13HI TCCGGA 1 cut(s) 1808
AoxI GGCC 6 cut(s) 794, 2122, 2241, 2751, 3335, 3500
ApaLI GTGCAC 2 cut(s) 820, 1063
ApeKI GCWGC 4 cut(s) 287, 1197, 1885, 3059
AspS9I GGNCC 5 cut(s) 4, 534, 1528, 2594, 3956
AsuHPI GGTGA 4 cut(s) 281, 1212, 1297, 3474
AsuII TTCGAA 1 cut(s) 3595
AvaI CYCGRG 1 cut(s) 2914
AvaII GGWCC 5 cut(s) 4, 534, 1528, 2594, 3956
BaeGI GKGCMC 2 cut(s) 824, 1067
BalI TGGCCA 4 cut(s) 796, 2243, 2753, 3337
BanII GRGCYC 1 cut(s) 367
BarI GAAGNNNNNNTAC 2 cut(s) 2304, 2336
BbrPI CACGTG 1 cut(s) 3898
BbsI GAAGAC 5 cut(s) 1031, 1569, 1694, 1790, 2243
Bbv12I GWGCWC 4 cut(s) 40, 367, 824, 1067
BbvCI CCTCAGC 1 cut(s) 1356
BbvI GCAGC 4 cut(s) 274, 1184, 1872, 3046
BcgI CGANNNNNNTGC 4 cut(s) 1151, 1185, 2693, 2727
BciT130I CCWGG 3 cut(s) 931, 2789, 3315
BciVI GTATCC 1 cut(s) 1010
BcoDI GTCTC 6 cut(s) 14, 2021, 2180, 2308, 3437, 3459
BfmI CTRYAG 2 cut(s) 915, 2209
BfrI CTTAAG 2 cut(s) 497, 836
BfuI GTATCC 1 cut(s) 1010
BglI GCCNNNNNGGC 1 cut(s) 2240
BglII AGATCT 1 cut(s) 3074
BisI GCNGC 5 cut(s) 288, 1198, 1886, 3060, 3905
BlsI GCNGC 5 cut(s) 289, 1199, 1887, 3061, 3906
Bme1390I CCNGG 3 cut(s) 931, 2789, 3315
Bme18I GGWCC 5 cut(s) 4, 534, 1528, 2594, 3956
BmeT110I CYCGRG 1 cut(s) 2914
BmgBI CACGTC 1 cut(s) 3054
BmgT120I GGNCC 5 cut(s) 4, 534, 1528, 2594, 3956
BmiI GGNNCC 1 cut(s) 535
BmrFI CCNGG 3 cut(s) 931, 2789, 3315
BmsI GCATC 8 cut(s) 63, 388, 616, 1378, 2547, 2698, 3309, 3718
BoxI GACNNNNGTC 1 cut(s) 1533
BpiI GAAGAC 5 cut(s) 1031, 1569, 1694, 1790, 2243
BplI GAGNNNNNCTC 6 cut(s) 2018, 2050, 2953, 2985, 3383, 3415
BpmI CTGGAG 1 cut(s) 2996
Bpu10I CCTNAGC 1 cut(s) 1356
Bpu14I TTCGAA 1 cut(s) 3595
BpuEI CTTGAG 2 cut(s) 1918, 3373
Bsa29I ATCGAT 1 cut(s) 3766
BsaAI YACGTR 1 cut(s) 3898
BsaBI GATNNNNATC 3 cut(s) 1632, 2984, 3661
BsaHI GRCGYC 2 cut(s) 409, 1795
BsaJI CCNNGG 9 cut(s) 930, 1068, 1531, 2119, 2748, 3313, 3314, 3390, 3497
BsaWI WCCGGW 1 cut(s) 1808
BsaXI ACNNNNNCTCC 4 cut(s) 460, 485, 490, 515
Bsc4I CCNNNNNNNGG 2 cut(s) 1291, 2356
Bse118I RCCGGY 1 cut(s) 337
Bse1I ACTGG 5 cut(s) 1198, 1285, 1308, 2784, 2979
Bse3DI GCAATG 3 cut(s) 1525, 2830, 3213
Bse8I GATNNNNATC 3 cut(s) 1632, 2984, 3661
BseAI TCCGGA 1 cut(s) 1808
BseBI CCWGG 3 cut(s) 931, 2789, 3315
BseCI ATCGAT 1 cut(s) 3766
BseDI CCNNGG 9 cut(s) 930, 1068, 1531, 2119, 2748, 3313, 3314, 3390, 3497
BseGI GGATG 9 cut(s) 631, 1063, 1817, 2115, 2562, 2669, 2939, 3324, 3984
BseJI GATNNNNATC 3 cut(s) 1632, 2984, 3661
BseLI CCNNNNNNNGG 2 cut(s) 1291, 2356
BseMI GCAATG 3 cut(s) 1525, 2830, 3213
BseNI ACTGG 5 cut(s) 1198, 1285, 1308, 2784, 2979
BseRI GAGGAG 4 cut(s) 506, 2278, 2531, 3239
BseSI GKGCMC 2 cut(s) 824, 1067
BseXI GCAGC 4 cut(s) 274, 1184, 1872, 3046
BsgI GTGCAG 1 cut(s) 2297
BshFI GGCC 6 cut(s) 796, 2124, 2243, 2753, 3337, 3502
BshVI ATCGAT 1 cut(s) 3766
BsiHKAI GWGCWC 4 cut(s) 40, 367, 824, 1067
BsiHKCI CYCGRG 1 cut(s) 2914
BsiSI CCGG 2 cut(s) 338, 1809
BslFI GGGAC 5 cut(s) 124, 547, 3243, 3277, 3516
BslI CCNNNNNNNGG 2 cut(s) 1291, 2356
BsmAI GTCTC 6 cut(s) 14, 2021, 2180, 2308, 3437, 3459
BsmBI CGTCTC 2 cut(s) 2308, 3437
BsmFI GGGAC 5 cut(s) 124, 547, 3243, 3277, 3516
BsmI GAATGC 5 cut(s) 289, 634, 708, 848, 3692
BsnI GGCC 6 cut(s) 796, 2124, 2243, 2753, 3337, 3502
BsoBI CYCGRG 1 cut(s) 2914
Bsp119I TTCGAA 1 cut(s) 3595
Bsp1286I GDGCHC 4 cut(s) 40, 367, 824, 1067
Bsp13I TCCGGA 1 cut(s) 1808
Bsp1407I TGTACA 1 cut(s) 715
Bsp143I GATC 6 cut(s) 769, 828, 1891, 2666, 3074, 3682
Bsp19I CCATGG 2 cut(s) 2119, 2748
BspACI CCGC 5 cut(s) 2560, 2673, 3449, 3886, 3904
BspANI GGCC 6 cut(s) 796, 2124, 2243, 2753, 3337, 3502
BspDI ATCGAT 1 cut(s) 3766
BspEI TCCGGA 1 cut(s) 1808
BspHI TCATGA 1 cut(s) 3300
BspLI GGNNCC 1 cut(s) 535
BspPI GGATC 1 cut(s) 1886
BspQI GCTCTTC 2 cut(s) 28, 1332
BspT104I TTCGAA 1 cut(s) 3595
BspTI CTTAAG 2 cut(s) 497, 836
BsrDI GCAATG 3 cut(s) 1525, 2830, 3213
BsrFI RCCGGY 1 cut(s) 337
BsrGI TGTACA 1 cut(s) 715
BsrI ACTGG 5 cut(s) 1198, 1285, 1308, 2784, 2979
BssAI RCCGGY 1 cut(s) 337
BssECI CCNNGG 9 cut(s) 930, 1068, 1531, 2119, 2748, 3313, 3314, 3390, 3497
BssMI GATC 6 cut(s) 769, 828, 1891, 2666, 3074, 3682
BssNI GRCGYC 2 cut(s) 409, 1795
BssT1I CCWWGG 5 cut(s) 1068, 1531, 2119, 2748, 3497
Bst2UI CCWGG 3 cut(s) 931, 2789, 3315
Bst6I CTCTTC 7 cut(s) 28, 951, 1248, 1332, 1404, 1821, 1860
BstACI GRCGYC 2 cut(s) 409, 1795
BstAFI CTTAAG 2 cut(s) 497, 836
BstAPI GCANNNNNTGC 2 cut(s) 455, 626
BstAUI TGTACA 1 cut(s) 715
BstBAI YACGTR 1 cut(s) 3898
BstBI TTCGAA 1 cut(s) 3595
BstC8I GCNNGC 2 cut(s) 40, 1883
BstDSI CCRYGG 2 cut(s) 2119, 2748
BstF5I GGATG 9 cut(s) 631, 1063, 1817, 2115, 2562, 2669, 2939, 3324, 3984
BstKTI GATC 6 cut(s) 772, 831, 1894, 2669, 3077, 3685
BstMAI GTCTC 6 cut(s) 14, 2021, 2180, 2308, 3437, 3459
BstMBI GATC 6 cut(s) 769, 828, 1891, 2666, 3074, 3682
BstMWI GCNNNNNNNGC 4 cut(s) 35, 455, 626, 2240
BstNI CCWGG 3 cut(s) 931, 2789, 3315
BstNSI RCATGY 4 cut(s) 1876, 2507, 3326, 3520
BstPAI GACNNNNGTC 1 cut(s) 1533
BstSCI CCNGG 3 cut(s) 929, 2787, 3313
BstSFI CTRYAG 2 cut(s) 915, 2209
BstSLI GKGCMC 2 cut(s) 824, 1067
BstV1I GCAGC 4 cut(s) 274, 1184, 1872, 3046
BstV2I GAAGAC 5 cut(s) 1031, 1569, 1694, 1790, 2243
BstX2I RGATCY 2 cut(s) 1891, 3074
BstYI RGATCY 2 cut(s) 1891, 3074
Bsu15I ATCGAT 1 cut(s) 3766
BsuI GTATCC 1 cut(s) 1010
BsuRI GGCC 6 cut(s) 796, 2124, 2243, 2753, 3337, 3502
BsuTUI ATCGAT 1 cut(s) 3766
BtgI CCRYGG 2 cut(s) 2119, 2748
BtrI CACGTC 1 cut(s) 3054
BtsCI GGATG 9 cut(s) 631, 1063, 1817, 2115, 2562, 2669, 2939, 3324, 3984
BtsI GCAGTG 2 cut(s) 629, 874
BtsIMutI CAGTG 8 cut(s) 503, 543, 629, 874, 1292, 2244, 3156, 3442
Cac8I GCNNGC 2 cut(s) 40, 1883
CaiI CAGNNNCTG 2 cut(s) 29, 2030
CciI TCATGA 1 cut(s) 3300
Cfr10I RCCGGY 1 cut(s) 337
Cfr13I GGNCC 5 cut(s) 4, 534, 1528, 2594, 3956
ClaI ATCGAT 1 cut(s) 3766
CseI GACGC 2 cut(s) 417, 2773
CspCI CAANNNNNGTGG 2 cut(s) 307, 342
DpnI GATC 6 cut(s) 771, 830, 1893, 2668, 3076, 3684
DpnII GATC 6 cut(s) 769, 828, 1891, 2666, 3074, 3682
DraI TTTAAA 2 cut(s) 595, 745
DraIII CACNNNGTG 1 cut(s) 3901
EaeI YGGCCR 4 cut(s) 794, 2241, 2751, 3335
Eam1104I CTCTTC 7 cut(s) 28, 951, 1248, 1332, 1404, 1821, 1860
EarI CTCTTC 7 cut(s) 28, 951, 1248, 1332, 1404, 1821, 1860
Ecl136II GAGCTC 1 cut(s) 365
Eco130I CCWWGG 5 cut(s) 1068, 1531, 2119, 2748, 3497
Eco24I GRGCYC 1 cut(s) 367
Eco32I GATATC 2 cut(s) 1806, 2739
Eco47I GGWCC 5 cut(s) 4, 534, 1528, 2594, 3956
Eco53kI GAGCTC 1 cut(s) 365
Eco57I CTGAAG 7 cut(s) 1025, 1317, 1487, 1581, 1644, 1784, 2651
Eco72I CACGTG 1 cut(s) 3898
Eco88I CYCGRG 1 cut(s) 2914
EcoICRI GAGCTC 1 cut(s) 365
EcoRI GAATTC 2 cut(s) 2455, 2855
EcoRII CCWGG 3 cut(s) 929, 2787, 3313
EcoRV GATATC 2 cut(s) 1806, 2739
EcoT14I CCWWGG 5 cut(s) 1068, 1531, 2119, 2748, 3497
EcoT22I ATGCAT 2 cut(s) 708, 3324
EcoT38I GRGCYC 1 cut(s) 367
ErhI CCWWGG 5 cut(s) 1068, 1531, 2119, 2748, 3497
Esp3I CGTCTC 2 cut(s) 2308, 3437
FalI AAGNNNNNCTT 2 cut(s) 3817, 3849
FaqI GGGAC 5 cut(s) 124, 547, 3243, 3277, 3516
FauI CCCGC 1 cut(s) 3456
FblI GTMKAC 1 cut(s) 1174
Fnu4HI GCNGC 5 cut(s) 288, 1198, 1886, 3060, 3905
FokI GGATG 9 cut(s) 638, 1070, 1824, 2102, 2569, 2656, 2926, 3331, 3971
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 5 cut(s) 288, 1198, 1886, 3060, 3905
GluI GCNGC 5 cut(s) 288, 1198, 1886, 3060, 3905
GsuI CTGGAG 1 cut(s) 2996
HaeIII GGCC 6 cut(s) 796, 2124, 2243, 2753, 3337, 3502
HapII CCGG 2 cut(s) 338, 1809
HgaI GACGC 2 cut(s) 417, 2773
Hin1I GRCGYC 2 cut(s) 409, 1795
HincII GTYRAC 5 cut(s) 1594, 3174, 3783, 3847, 3982
HindII GTYRAC 5 cut(s) 1594, 3174, 3783, 3847, 3982
HindIII AAGCTT 2 cut(s) 857, 1499
HpaI GTTAAC 4 cut(s) 1594, 3174, 3783, 3847
HpaII CCGG 2 cut(s) 338, 1809
HphI GGTGA 4 cut(s) 281, 1212, 1297, 3474
HpyAV CCTTC 5 cut(s) 1292, 1495, 2692, 3173, 3624
HpyCH4IV ACGT 7 cut(s) 222, 1795, 2355, 3053, 3430, 3785, 3897
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 455, 626, 2240
HpySE526I ACGT 7 cut(s) 222, 1795, 2355, 3053, 3430, 3785, 3897
Hsp92I GRCGYC 2 cut(s) 409, 1795
Kpn2I TCCGGA 1 cut(s) 1808
KspAI GTTAAC 4 cut(s) 1594, 3174, 3783, 3847
Kzo9I GATC 6 cut(s) 769, 828, 1891, 2666, 3074, 3682
LguI GCTCTTC 2 cut(s) 28, 1332
LmnI GCTCC 2 cut(s) 493, 2820
Lsp1109I GCAGC 4 cut(s) 274, 1184, 1872, 3046
LweI GCATC 8 cut(s) 63, 388, 616, 1378, 2547, 2698, 3309, 3718
MaeII ACGT 7 cut(s) 222, 1795, 2355, 3053, 3430, 3785, 3897
MaeIII GTNAC 8 cut(s) 50, 349, 470, 501, 944, 1303, 3080, 3265
MalI GATC 6 cut(s) 771, 830, 1893, 2668, 3076, 3684
MboI GATC 6 cut(s) 769, 828, 1891, 2666, 3074, 3682
MfeI CAATTG 3 cut(s) 1163, 1637, 3811
MflI RGATCY 2 cut(s) 1891, 3074
MhlI GDGCHC 4 cut(s) 40, 367, 824, 1067
MlsI TGGCCA 4 cut(s) 796, 2243, 2753, 3337
MluNI TGGCCA 4 cut(s) 796, 2243, 2753, 3337
MlyI GAGTC 7 cut(s) 178, 1035, 1162, 1311, 2027, 2275, 3431
MmeI TCCRAC 4 cut(s) 546, 1069, 1164, 3405
Mox20I TGGCCA 4 cut(s) 796, 2243, 2753, 3337
Mph1103I ATGCAT 2 cut(s) 708, 3324
MroI TCCGGA 1 cut(s) 1808
MscI TGGCCA 4 cut(s) 796, 2243, 2753, 3337
MslI CAYNNNNRTG 6 cut(s) 48, 753, 777, 1462, 1662, 3825
Msp20I TGGCCA 4 cut(s) 796, 2243, 2753, 3337
MspA1I CMGCKG 3 cut(s) 1885, 3059, 3070
MspCI CTTAAG 2 cut(s) 497, 836
MspI CCGG 2 cut(s) 338, 1809
MspR9I CCNGG 3 cut(s) 931, 2789, 3315
MunI CAATTG 3 cut(s) 1163, 1637, 3811
Mva1269I GAATGC 5 cut(s) 289, 634, 708, 848, 3692
MvaI CCWGG 3 cut(s) 931, 2789, 3315
MwoI GCNNNNNNNGC 4 cut(s) 35, 455, 626, 2240
NcoI CCATGG 2 cut(s) 2119, 2748
NdeII GATC 6 cut(s) 769, 828, 1891, 2666, 3074, 3682
NlaIV GGNNCC 1 cut(s) 535
NmeAIII GCCGAG 1 cut(s) 3415
NmuCI GTSAC 5 cut(s) 50, 501, 944, 1303, 3080
NsiI ATGCAT 2 cut(s) 708, 3324
NspI RCATGY 4 cut(s) 1876, 2507, 3326, 3520
NspV TTCGAA 1 cut(s) 3595
PagI TCATGA 1 cut(s) 3300
PasI CCCWGGG 1 cut(s) 3314
PciI ACATGT 2 cut(s) 1872, 3516
PciSI GCTCTTC 2 cut(s) 28, 1332
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 5 cut(s) 289, 634, 708, 848, 3692
PflFI GACNNNGTC 1 cut(s) 2054
PfoI TCCNGGA 1 cut(s) 2787
PkrI GCNGC 5 cut(s) 289, 1199, 1887, 3061, 3906
PleI GAGTC 7 cut(s) 177, 1034, 1162, 1310, 2027, 2274, 3430
PmaCI CACGTG 1 cut(s) 3898
PmlI CACGTG 1 cut(s) 3898
PpsI GAGTC 7 cut(s) 177, 1034, 1162, 1310, 2027, 2274, 3430
Ppu21I YACGTR 1 cut(s) 3898
PscI ACATGT 2 cut(s) 1872, 3516
PshAI GACNNNNGTC 1 cut(s) 1533
Psp124BI GAGCTC 1 cut(s) 367
Psp6I CCWGG 3 cut(s) 929, 2787, 3313
PspCI CACGTG 1 cut(s) 3898
PspGI CCWGG 3 cut(s) 929, 2787, 3313
PspN4I GGNNCC 1 cut(s) 535
PspPI GGNCC 5 cut(s) 4, 534, 1528, 2594, 3956
PstNI CAGNNNCTG 2 cut(s) 29, 2030
PsuI RGATCY 2 cut(s) 1891, 3074
PsyI GACNNNGTC 1 cut(s) 2054
PvuII CAGCTG 3 cut(s) 1885, 3059, 3070
RseI CAYNNNNRTG 6 cut(s) 48, 753, 777, 1462, 1662, 3825
SacI GAGCTC 1 cut(s) 367
SapI GCTCTTC 2 cut(s) 28, 1332
SatI GCNGC 5 cut(s) 288, 1198, 1886, 3060, 3905
Sau3AI GATC 6 cut(s) 769, 828, 1891, 2666, 3074, 3682
Sau96I GGNCC 5 cut(s) 4, 534, 1528, 2594, 3956
SchI GAGTC 7 cut(s) 178, 1035, 1162, 1311, 2027, 2275, 3431
ScrFI CCNGG 3 cut(s) 931, 2789, 3315
SduI GDGCHC 4 cut(s) 40, 367, 824, 1067
SfaNI GCATC 8 cut(s) 63, 388, 616, 1378, 2547, 2698, 3309, 3718
SfcI CTRYAG 2 cut(s) 915, 2209
SfuI TTCGAA 1 cut(s) 3595
SinI GGWCC 5 cut(s) 4, 534, 1528, 2594, 3956
SmiMI CAYNNNNRTG 6 cut(s) 48, 753, 777, 1462, 1662, 3825
SmlI CTYRAG 4 cut(s) 497, 836, 1933, 3352
SmoI CTYRAG 4 cut(s) 497, 836, 1933, 3352
SsiI CCGC 5 cut(s) 2560, 2673, 3449, 3886, 3904
SspI AATATT 1 cut(s) 850
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 3 cut(s) 929, 2787, 3313
StyI CCWWGG 5 cut(s) 1068, 1531, 2119, 2748, 3497
TaiI ACGT 7 cut(s) 225, 1798, 2358, 3056, 3433, 3788, 3900
TaqI TCGA 8 cut(s) 172, 423, 1476, 2306, 2390, 3166, 3595, 3766
TatI WGTACW 5 cut(s) 715, 911, 1310, 2320, 2966
TauI GCSGC 1 cut(s) 3907
TscAI CASTG 8 cut(s) 510, 550, 636, 881, 1292, 2244, 3156, 3442
TseFI GTSAC 5 cut(s) 50, 501, 944, 1303, 3080
TseI GCWGC 4 cut(s) 287, 1197, 1885, 3059
Tsp45I GTSAC 5 cut(s) 50, 501, 944, 1303, 3080
TspGWI ACGGA 5 cut(s) 181, 1114, 2085, 3319, 3647
TspRI CASTG 8 cut(s) 510, 550, 636, 881, 1292, 2244, 3156, 3442
Tth111I GACNNNGTC 1 cut(s) 2054
Vha464I CTTAAG 2 cut(s) 497, 836
VneI GTGCAC 2 cut(s) 820, 1063
VpaK11BI GGWCC 5 cut(s) 4, 534, 1528, 2594, 3956
XbaI TCTAGA 4 cut(s) 2164, 2182, 2461, 3094
XceI RCATGY 4 cut(s) 1876, 2507, 3326, 3520
XcmI CCANNNNNNNNNTGG 2 cut(s) 1445, 1713
XmiI GTMKAC 1 cut(s) 1174
ZraI GACGTC 1 cut(s) 1796
Zsp2I ATGCAT 2 cut(s) 708, 3324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.