Rh4DG074200

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
11005445 .. 11036469
31025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG074200.1

Sequence Viewer

Length: 3909 bp
ATGAATGCTATCATGGAAGCAAGTGAAGAAGAAGACTCTGAGGATGAGAGCTCTGAAGATGAGTCGGTTGAAAAAGTTTCATCTGAGCTTCAGGATAATATGAATGATATCAGGAAACAAATGAAGAGGAAGGTTGTTGCCTCTGAGAAACCAGTTTACTTCATAACAAAACATCGAGTTATAAAAGTGATGGAGTTTCTTCTTGCAATTGGCACTGGAATTGTTGGAAAGCTTGCCGAATACACAGTTGAACCAGTTATACGCCAGGTGGGATATGTAATCTGCTACAGTAGGAACCTCAAGAAACTACAGAGTCAAGTAGATGACTTGGTTGATGCTAAACAAAGGGTTCAACATGCTGTGGAAACAGAAAAAAGAAAAGGTAAAAAGATTGAAACAGATGTGCACAACTGGCTGACTAAAGTGGAAGAGATCACGGGAGAAGCAAATGATTTTTTGAAAGCTGAACACCAAGCAAAGATCAAGTGTCTACATGGCTTTTGTCCTAATTTAAAGCTTCGTCATCAGCTGGGCAGGAAGTCTACAAAATTGGTTCAAGAGGTTGTTGAACTCTTTGGCAAAAAAGATTTTGCTAATATTGCATACGATGTTTTCCCAGAAGAGGTATGTGTAATATCTACCAAAGACTACGAGGCCTTTGATTCAAGGACTTCAGTTGTGAAGCAGATTATGGATGAATTGAGAAACTCTGATACCGACATGATTGGGGTGTATGGTATTGGGGGTGTGGATGCTAGCATTCTTCCAGCAGATTTGTTCACCAATAAGTTAGAGAGATTCCAAATATGTATTGGGTCTGTATGGAATTGGGGTGATGTGGATGAAACCCTCAACGCACTAAAGCTCCAACTCACTATCAGCAATGAATTGGACCATGGTCTAGAAATGTTGCTGAAAAGAACTGAAGACTTGTACTTGGAGGGGACGGAGATTTTTAATAGCAATATTGTCCATCATCAATTAGGTACTGAAGGTTTTCAGCAACTGAAACATCTCCACATTCAAAACAGTGCTGGACTTGCATACATCATTAATGGGAAGGTCAATTTTCCTAACTTGACATGGTTGGCAAGACTACAATTAGAGAACTGTACTAAAACTAATACCATTTGTGAAGAAATTGAAGAGGCAGACTCAAAGGGAAACCTTGACATTGCGATACAACACTTTCTTTTTGACAATAAGGTAGCGTTTCCAGACTTGAAGAAGTTATCCATTGATGGCCTAGCAAAGTTAACAACATTATGGAACAATCAATTTTCTCTAGAGAGTTCAAAAAATCTAGAGACAATAGAAATTGTTTCATGTGACAGTTTGAAAAGTATTTTTCCAGCCTCAATGGCCAGAAGTCTACACCAGTTGAAGAGCTTGACAGTAAAGAATTGTGGGGTGGAGGAAATCATCTCGATAGAAGACGTTGTACTAACAACACCTATGTTTCTTTTCTCAAAACTAACATATGTGAGATTTGAGAAGTTACCCAAACTTAGGAGTTTCTATCCAGGGTTGCATGCTTGCAATTGGCCATCACTCAAAACTTTGTCGGTGTATGATTGTACTAAAGTGCAGATATTTGCGGACGCCAAGCGTGAGTTGAATAATCTTTACACTCCAAATAAACAATCTCTGTTTTCACTCGATGAGGATTCATTTCCCAATTTGGAAATATTAGGCTTGGACGTAATGGAGAATTGGGATAGTCTGCCACTCCACCTGTTCAGGAAGCTCAAATATCTTTATAGTTATGCATACACCAACTCATCTTTGAATTCTTTGGAGAAATTACTTGGCCTTGAAAAAGTCAATGTGAGTAGTAATGGAGAAATACATGCAGTTGGGGATGGGACCCTCCCACACTTAAGAGAGTTGCACCTTTACGGGATGCGGAAGCTGATGAATCTTGGGGAGGATAACTTCGGACCAACATGCTCATATTTTCCAAATCTGGAAATTCTGGAGCTAGTGGACTGTGATAGCTTAAAGAATTTAAGATCATCCGCAATATCCTTCAAGAATATAACAACTTTGCAAGTAAGTCGTTGTAAGGGATTGAAATACTTGATATCTTACTCCATGGCCAAAAGTTTGATGCAACTCACAAAACTAGAAGTCCAGGATTGTGAGGAAATGATAGAAATAGTGGGCAGCAATGAAAATGATGATTCAGAAAATGAGATTGAATTCAGGGTGTTGAAACATTTGGAACTTTCTGCTCTACCAAGTCTGAGAGGCTTTTGCTCGGGAACTCGCATTGTCAAATTTCCATCCTTGGAAAAATTATCCATGAGTTGTACTCAACTGGAGACGTTCATCTTTGATTCTATGGGTAAAAGTAATACAATTGGCAAGGACATCAAAGACATCGACTCGAGCAAAAACCACGAGACTGAAGTACTGCAACCTTTTCTTTTTGACAACAAGGTTGATTTTCCAAGGTTGGAGAGCTTGTCTCTCAAGGGTTTGACAAAGTTGACGGCAATATGGCACAGTCAACTTTCTCTAAACTCTCTTCGTAGACTCAAAGACCTTGAAGTACATGGATGTGGAAATTTAATAGGTATCTTTGTGCCCAGTACTATGGCAAGATTGAATGCCCTTGAAACCTCATTGATAAAAGAGTGCAAGTCAATACAAGTTGTATTTGAACTTGGAGGAATTGATGTTATAGAAGAACAGGACACATCAGCAGTCACTCAGTCGAAATCTTTTGACTGTAGAAATCTAAAGTCAGTAGAAATTAATTGTTGTGAGAGTCTAAAAAACATTTTCCCAGCTTCGGTTGCTAGAAATCTTCAACAGTTAGAGAGGCTGATAGTGAAGAGATGTGGAGTTGAGGAAATCATTGCAAACGAAGGGGAACCACAAAGAACGCCAACTTTTGTTTTCCCAAATGTCACACATGTGTACTTAACAGACTTGCCCCAACTTAGGTGTTTCTATCCAGCCATGCATACTTCTAATTGGCCAGCACTTCAAACGTTGGTGGTTGTTCGATGTCACAAATTGGAGATCTTCTCTGGGGCACTTTCAAGCTTTCAAGGGAAATATGAATCAAACCCGTCCACTCCAATTAAACAAACTCTCTTTTCAATTGAGAAGGATTCATTTCCCAACTTGGAAGACTTGAGTTTATGCAGCATGGAGATTTGGAATGGTCCACTTCCGGTCCACTTCTTTAGAAAGCTAAAATCTCTTACGGTTTGTTGTCCACAGTCCAAGTCAGTTGTTTTCCTTGACAAATTACTCGATGAAGGAAGCTCTAGTACTAGGCAAAGAGAGGATGCAGTTGAGATTGGGACCCTCCCACGTTTAAGAAAGTTGGATCTTCGTTTAATGCCCAACCTGATGCATCTTGGCAAGGATAACTCACAATCAGCCCCCCGCCCAAATTTTCCAAATCTCGAAATTCTACTGCTGTATACTTGTGAAAGCTTACAGAATCTAACCTCATCTGCAATATCCTTCAAGAATCTGACAACTTTGGAAGTACATTTTTGCAAGGGATTGAAATACTTGCTAACTTACTCCGTGGCCAGAGGTTTAAAACATCTCACAAAACTGGAAGTTGAGGATTGTAAGAGACTTGTTAGTATAGTGGGAAGCACCGAAGAAGACGATTCTGGGAATAATGATGAGATTACATTCAGGCGATTGAAACATTTGAGACTTTCTTGTCTACCAAGACTGCAAGGCTTTTGCTCGGGAAATTGCATTGCTAAATTCCCGTCCTTGGAAACTTTAACCATGAGCAACCGCCTCAAATTGAAGATTTTCCCAGCTCATGACCAAACGCCACAGCTAACAAACGAAGAGAACGACACAGATGTGGATTACTGCGAGTGGAGACTGACTGTCGAGGATGAAATGAATTCGTCAAATACTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1302

Amino Acids

147.58

Weight (kDa)

5.63

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 321 - 470 4.1e-23 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 671 - 781 6.5e-13 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 821 - 897 8.1e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 908 - 950 4.5e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1025 - 1158 2.5e-08 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1160 - 1267 1.7e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 182
AasI GACNNNNNNGTC 1 cut(s) 3693
AccI GTMKAC 6 cut(s) 490, 542, 1372, 2536, 3440, 3697
AciI CCGC 5 cut(s) 1598, 1906, 2019, 3403, 3775
AclI AACGTT 1 cut(s) 2999
AclWI GGATC 1 cut(s) 3351
AcoI YGGCCR 5 cut(s) 1362, 1544, 2097, 2984, 3552
AcuI CTGAAG 6 cut(s) 74, 75, 657, 945, 1011, 2430
AcyI GRCGYC 1 cut(s) 1602
AfiI CCNNNNNNNGG 5 cut(s) 622, 1509, 2797, 2949, 3751
AflII CTTAAG 1 cut(s) 1879
AflIII ACRYGT 1 cut(s) 2920
AhdI GACNNNNNGTC 1 cut(s) 3872
AjnI CCWGG 3 cut(s) 264, 1522, 2133
AleI CACNNNNGTG 2 cut(s) 2921, 3845
Alw21I GWGCWC 2 cut(s) 53, 408
Alw26I GTCTC 7 cut(s) 1301, 2318, 2399, 2475, 3595, 3679, 3859
Alw44I GTGCAC 1 cut(s) 404
AlwI GGATC 1 cut(s) 3351
AlwNI CAGNNNCTG 1 cut(s) 1006
Ama87I CYCGRG 3 cut(s) 2260, 2389, 3721
AoxI GGCC 8 cut(s) 654, 1243, 1362, 1544, 1810, 2097, 2984, 3552
ApaLI GTGCAC 1 cut(s) 404
ApeKI GCWGC 2 cut(s) 2166, 3156
AseI ATTAAT 2 cut(s) 1053, 2760
Asp700I GAANNNNTTC 2 cut(s) 996, 3791
AspS9I GGNCC 6 cut(s) 892, 1866, 1940, 3176, 3187, 3318
AsuHPI GGTGA 2 cut(s) 772, 845
AsuNHI GCTAGC 1 cut(s) 755
AvaI CYCGRG 3 cut(s) 2260, 2389, 3721
AvaII GGWCC 6 cut(s) 892, 1866, 1940, 3176, 3187, 3318
BaeGI GKGCMC 3 cut(s) 408, 2592, 3046
BalI TGGCCA 5 cut(s) 1364, 1546, 2099, 2986, 3554
BanII GRGCYC 1 cut(s) 53
BarI GAAGNNNNNNTAC 4 cut(s) 1425, 1457, 3268, 3300
BauI CACGAG 1 cut(s) 2402
BbsI GAAGAC 5 cut(s) 39, 933, 1440, 3147, 3639
Bbv12I GWGCWC 2 cut(s) 53, 408
BbvI GCAGC 2 cut(s) 2178, 3168
BccI CCATC 6 cut(s) 184, 981, 1235, 1555, 1856, 2293
BceAI ACGGC 1 cut(s) 2511
BcgI CGANNNNNNTGC 2 cut(s) 2039, 2073
BciT130I CCWGG 3 cut(s) 266, 1524, 2135
BcoDI GTCTC 7 cut(s) 1301, 2318, 2399, 2475, 3595, 3679, 3859
BfmI CTRYAG 3 cut(s) 286, 308, 2734
BfrI CTTAAG 1 cut(s) 1879
BglI GCCNNNNNGGC 1 cut(s) 1361
BglII AGATCT 1 cut(s) 3030
BisI GCNGC 2 cut(s) 2167, 3157
BlsI GCNGC 2 cut(s) 2168, 3158
BmcAI AGTACT 3 cut(s) 2415, 2596, 3286
Bme1390I CCNGG 3 cut(s) 266, 1524, 2135
Bme18I GGWCC 6 cut(s) 892, 1866, 1940, 3176, 3187, 3318
BmeRI GACNNNNNGTC 1 cut(s) 3872
BmeT110I CYCGRG 3 cut(s) 2260, 2389, 3721
BmgT120I GGNCC 6 cut(s) 892, 1866, 1940, 3176, 3187, 3318
BmiI GGNNCC 6 cut(s) 296, 1867, 1868, 2880, 3319, 3320
BmrFI CCNGG 3 cut(s) 266, 1524, 2135
BmrI ACTGGG 1 cut(s) 2586
BmsI GCATC 7 cut(s) 325, 742, 1893, 2100, 3292, 3357, 3379
BmtI GCTAGC 1 cut(s) 759
BmuI ACTGGG 1 cut(s) 2586
BoxI GACNNNNGTC 1 cut(s) 897
BpiI GAAGAC 5 cut(s) 39, 933, 1440, 3147, 3639
BplI GAGNNNNNCTC 8 cut(s) 1139, 1171, 2299, 2331, 2455, 2487, 3020, 3052
BpmI CTGGAG 2 cut(s) 1997, 2342
BpuEI CTTGAG 3 cut(s) 284, 2459, 3166
BsaHI GRCGYC 1 cut(s) 1602
BsaJI CCNNGG 7 cut(s) 895, 1523, 2094, 2289, 2453, 3549, 3750
BsaWI WCCGGW 1 cut(s) 3184
BsaXI ACNNNNNCTCC 4 cut(s) 849, 879, 2453, 2483
Bsc4I CCNNNNNNNGG 5 cut(s) 622, 1509, 2797, 2949, 3751
Bse1I ACTGG 8 cut(s) 152, 220, 254, 416, 1378, 2325, 2592, 3585
Bse3DI GCAATG 5 cut(s) 889, 1173, 2176, 2862, 3732
BseBI CCWGG 3 cut(s) 266, 1524, 2135
BseDI CCNNGG 7 cut(s) 895, 1523, 2094, 2289, 2453, 3549, 3750
BseLI CCNNNNNNNGG 5 cut(s) 622, 1509, 2797, 2949, 3751
BseMI GCAATG 5 cut(s) 889, 1173, 2176, 2862, 3732
BseMII CTCAG 5 cut(s) 30, 75, 135, 2237, 2729
BseNI ACTGG 8 cut(s) 152, 220, 254, 416, 1378, 2325, 2592, 3585
BseSI GKGCMC 3 cut(s) 408, 2592, 3046
BseXI GCAGC 2 cut(s) 2178, 3168
BseYI CCCAGC 3 cut(s) 529, 2791, 3796
BsgI GTGCAG 1 cut(s) 1607
BshFI GGCC 8 cut(s) 656, 1245, 1364, 1546, 1812, 2099, 2986, 3554
BsiHKAI GWGCWC 2 cut(s) 53, 408
BsiHKCI CYCGRG 3 cut(s) 2260, 2389, 3721
BsiSI CCGG 1 cut(s) 3185
BslFI GGGAC 3 cut(s) 958, 1879, 3331
BslI CCNNNNNNNGG 5 cut(s) 622, 1509, 2797, 2949, 3751
BsmAI GTCTC 7 cut(s) 1301, 2318, 2399, 2475, 3595, 3679, 3859
BsmBI CGTCTC 1 cut(s) 2318
BsmFI GGGAC 3 cut(s) 958, 1879, 3331
BsmI GAATGC 3 cut(s) 10, 759, 2617
BsnI GGCC 8 cut(s) 656, 1245, 1364, 1546, 1812, 2099, 2986, 3554
BsoBI CYCGRG 3 cut(s) 2260, 2389, 3721
Bsp1286I GDGCHC 4 cut(s) 53, 408, 2592, 3046
Bsp143I GATC 5 cut(s) 432, 480, 2012, 3030, 3343
Bsp19I CCATGG 2 cut(s) 895, 2094
BspACI CCGC 5 cut(s) 1598, 1906, 2019, 3403, 3775
BspANI GGCC 8 cut(s) 656, 1245, 1364, 1546, 1812, 2099, 2986, 3554
BspCNI CTCAG 5 cut(s) 31, 76, 136, 2238, 2728
BspHI TCATGA 1 cut(s) 3802
BspLI GGNNCC 6 cut(s) 296, 1867, 1868, 2880, 3319, 3320
BspOI GCTAGC 1 cut(s) 759
BspPI GGATC 1 cut(s) 3351
BspQI GCTCTTC 1 cut(s) 1379
BspTI CTTAAG 1 cut(s) 1879
BsrDI GCAATG 5 cut(s) 889, 1173, 2176, 2862, 3732
BsrI ACTGG 8 cut(s) 152, 220, 254, 416, 1378, 2325, 2592, 3585
BssECI CCNNGG 7 cut(s) 895, 1523, 2094, 2289, 2453, 3549, 3750
BssMI GATC 5 cut(s) 432, 480, 2012, 3030, 3343
BssNAI GTATAC 1 cut(s) 3441
BssNI GRCGYC 1 cut(s) 1602
BssSI CACGAG 1 cut(s) 2402
BssT1I CCWWGG 5 cut(s) 895, 2094, 2289, 2453, 3750
Bst1107I GTATAC 1 cut(s) 3441
Bst2BI CACGAG 1 cut(s) 2402
Bst2UI CCWGG 3 cut(s) 266, 1524, 2135
Bst6I CTCTTC 8 cut(s) 119, 423, 615, 1140, 1379, 2535, 2834, 3825
BstACI GRCGYC 1 cut(s) 1602
BstAFI CTTAAG 1 cut(s) 1879
BstC8I GCNNGC 5 cut(s) 234, 757, 1533, 1537, 2988
BstDEI CTNAG 7 cut(s) 39, 84, 144, 1508, 2246, 2715, 2948
BstDSI CCRYGG 3 cut(s) 895, 2094, 3549
BstKTI GATC 5 cut(s) 435, 483, 2015, 3033, 3346
BstMAI GTCTC 7 cut(s) 1301, 2318, 2399, 2475, 3595, 3679, 3859
BstMBI GATC 5 cut(s) 432, 480, 2012, 3030, 3343
BstMWI GCNNNNNNNGC 5 cut(s) 412, 599, 1040, 1361, 2801
BstNI CCWGG 3 cut(s) 266, 1524, 2135
BstNSI RCATGY 5 cut(s) 359, 1535, 1853, 1950, 2924
BstPAI GACNNNNGTC 1 cut(s) 897
BstSCI CCNGG 3 cut(s) 264, 1522, 2133
BstSFI CTRYAG 3 cut(s) 286, 308, 2734
BstSLI GKGCMC 3 cut(s) 408, 2592, 3046
BstV1I GCAGC 2 cut(s) 2178, 3168
BstV2I GAAGAC 5 cut(s) 39, 933, 1440, 3147, 3639
BstX2I RGATCY 2 cut(s) 3030, 3343
BstXI CCANNNNNNTGG 1 cut(s) 2599
BstYI RGATCY 2 cut(s) 3030, 3343
BstZ17I GTATAC 1 cut(s) 3441
BsuRI GGCC 8 cut(s) 656, 1245, 1364, 1546, 1812, 2099, 2986, 3554
BtgI CCRYGG 3 cut(s) 895, 2094, 3549
BtsIMutI CAGTG 2 cut(s) 213, 1036
Cac8I GCNNGC 5 cut(s) 234, 757, 1533, 1537, 2988
CaiI CAGNNNCTG 1 cut(s) 1006
CciI TCATGA 1 cut(s) 3802
Cfr13I GGNCC 6 cut(s) 892, 1866, 1940, 3176, 3187, 3318
CseI GACGC 1 cut(s) 1610
DdeI CTNAG 7 cut(s) 39, 84, 144, 1508, 2246, 2715, 2948
DpnI GATC 5 cut(s) 434, 482, 2014, 3032, 3345
DpnII GATC 5 cut(s) 432, 480, 2012, 3030, 3343
DraI TTTAAA 2 cut(s) 513, 3564
DrdI GACNNNNNNGTC 1 cut(s) 3693
DriI GACNNNNNGTC 1 cut(s) 3872
DseDI GACNNNNNNGTC 1 cut(s) 3693
EaeI YGGCCR 5 cut(s) 1362, 1544, 2097, 2984, 3552
Eam1104I CTCTTC 8 cut(s) 119, 423, 615, 1140, 1379, 2535, 2834, 3825
Eam1105I GACNNNNNGTC 1 cut(s) 3872
EarI CTCTTC 8 cut(s) 119, 423, 615, 1140, 1379, 2535, 2834, 3825
Ecl136II GAGCTC 1 cut(s) 51
Eco130I CCWWGG 5 cut(s) 895, 2094, 2289, 2453, 3750
Eco147I AGGCCT 1 cut(s) 656
Eco24I GRGCYC 1 cut(s) 53
Eco32I GATATC 2 cut(s) 109, 2085
Eco47I GGWCC 6 cut(s) 892, 1866, 1940, 3176, 3187, 3318
Eco53kI GAGCTC 1 cut(s) 51
Eco57I CTGAAG 6 cut(s) 74, 75, 657, 945, 1011, 2430
Eco88I CYCGRG 3 cut(s) 2260, 2389, 3721
EcoICRI GAGCTC 1 cut(s) 51
EcoO109I RGGNCCY 2 cut(s) 1866, 3318
EcoRI GAATTC 3 cut(s) 1789, 2201, 3889
EcoRII CCWGG 3 cut(s) 264, 1522, 2133
EcoRV GATATC 2 cut(s) 109, 2085
EcoT14I CCWWGG 5 cut(s) 895, 2094, 2289, 2453, 3750
EcoT22I ATGCAT 3 cut(s) 1771, 2973, 3372
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 5 cut(s) 895, 2094, 2289, 2453, 3750
Esp3I CGTCTC 1 cut(s) 2318
FaqI GGGAC 3 cut(s) 958, 1879, 3331
FauI CCCGC 1 cut(s) 3410
FauNDI CATATG 1 cut(s) 1480
FblI GTMKAC 6 cut(s) 490, 542, 1372, 2536, 3440, 3697
Fnu4HI GCNGC 2 cut(s) 2167, 3157
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 2 cut(s) 2167, 3157
GluI GCNGC 2 cut(s) 2167, 3157
GsaI CCCAGC 3 cut(s) 533, 2795, 3800
GsuI CTGGAG 2 cut(s) 1997, 2342
HaeIII GGCC 8 cut(s) 656, 1245, 1364, 1546, 1812, 2099, 2986, 3554
HapII CCGG 1 cut(s) 3185
HgaI GACGC 1 cut(s) 1610
Hin1I GRCGYC 1 cut(s) 1602
HincII GTYRAC 3 cut(s) 1257, 2493, 2513
HindII GTYRAC 3 cut(s) 1257, 2493, 2513
HindIII AAGCTT 4 cut(s) 230, 515, 3052, 3451
HpaI GTTAAC 1 cut(s) 1257
HpaII CCGG 1 cut(s) 3185
HphI GGTGA 2 cut(s) 772, 845
Hpy188I TCNGA 9 cut(s) 40, 55, 85, 145, 712, 1940, 2188, 2247, 3495
HpyAV CCTTC 8 cut(s) 124, 986, 1054, 2038, 2867, 3112, 3266, 3493
HpyCH4IV ACGT 5 cut(s) 1437, 1701, 2327, 2999, 3328
HpyF10VI GCNNNNNNNGC 5 cut(s) 412, 599, 1040, 1361, 2801
HpyF3I CTNAG 7 cut(s) 39, 84, 144, 1508, 2246, 2715, 2948
HpySE526I ACGT 5 cut(s) 1437, 1701, 2327, 2999, 3328
Hsp92I GRCGYC 1 cut(s) 1602
KflI GGGWCCC 2 cut(s) 1866, 3318
KspAI GTTAAC 1 cut(s) 1257
Kzo9I GATC 5 cut(s) 432, 480, 2012, 3030, 3343
LguI GCTCTTC 1 cut(s) 1379
LmnI GCTCC 2 cut(s) 870, 1978
Lsp1109I GCAGC 2 cut(s) 2178, 3168
LweI GCATC 7 cut(s) 325, 742, 1893, 2100, 3292, 3357, 3379
MaeII ACGT 5 cut(s) 1437, 1701, 2327, 2999, 3328
MaeIII GTNAC 5 cut(s) 1328, 1497, 2710, 2914, 3017
MalI GATC 5 cut(s) 434, 482, 2014, 3032, 3345
MboI GATC 5 cut(s) 432, 480, 2012, 3030, 3343
MfeI CAATTG 4 cut(s) 207, 1540, 2361, 3111
MflI RGATCY 2 cut(s) 3030, 3343
MhlI GDGCHC 4 cut(s) 53, 408, 2592, 3046
MlsI TGGCCA 5 cut(s) 1364, 1546, 2099, 2986, 3554
MluNI TGGCCA 5 cut(s) 1364, 1546, 2099, 2986, 3554
MlyI GAGTC 7 cut(s) 29, 71, 322, 1148, 2381, 2532, 2782
MmeI TCCRAC 4 cut(s) 205, 892, 2439, 3321
Mox20I TGGCCA 5 cut(s) 1364, 1546, 2099, 2986, 3554
Mph1103I ATGCAT 3 cut(s) 1771, 2973, 3372
MroXI GAANNNNTTC 2 cut(s) 996, 3791
MscI TGGCCA 5 cut(s) 1364, 1546, 2099, 2986, 3554
MslI CAYNNNNRTG 3 cut(s) 2562, 2921, 3845
Msp20I TGGCCA 5 cut(s) 1364, 1546, 2099, 2986, 3554
MspA1I CMGCKG 1 cut(s) 529
MspCI CTTAAG 1 cut(s) 1879
MspI CCGG 1 cut(s) 3185
MspR9I CCNGG 3 cut(s) 266, 1524, 2135
MunI CAATTG 4 cut(s) 207, 1540, 2361, 3111
Mva1269I GAATGC 3 cut(s) 10, 759, 2617
MvaI CCWGG 3 cut(s) 266, 1524, 2135
MwoI GCNNNNNNNGC 5 cut(s) 412, 599, 1040, 1361, 2801
NcoI CCATGG 2 cut(s) 895, 2094
NdeI CATATG 1 cut(s) 1480
NdeII GATC 5 cut(s) 432, 480, 2012, 3030, 3343
NheI GCTAGC 1 cut(s) 755
NlaIV GGNNCC 6 cut(s) 296, 1867, 1868, 2880, 3319, 3320
NmuCI GTSAC 4 cut(s) 1328, 2710, 2914, 3017
NsiI ATGCAT 3 cut(s) 1771, 2973, 3372
NspI RCATGY 5 cut(s) 359, 1535, 1853, 1950, 2924
OliI CACNNNNGTG 2 cut(s) 2921, 3845
PaeI GCATGC 1 cut(s) 1535
PaeR7I CTCGAG 1 cut(s) 2389
PagI TCATGA 1 cut(s) 3802
PceI AGGCCT 1 cut(s) 656
PciI ACATGT 1 cut(s) 2920
PciSI GCTCTTC 1 cut(s) 1379
PcsI WCGNNNNNNNCGW 1 cut(s) 3834
PctI GAATGC 3 cut(s) 10, 759, 2617
PdmI GAANNNNTTC 2 cut(s) 996, 3791
PfoI TCCNGGA 1 cut(s) 2133
PkrI GCNGC 2 cut(s) 2168, 3158
PleI GAGTC 7 cut(s) 29, 70, 321, 1148, 2381, 2532, 2781
PpsI GAGTC 7 cut(s) 29, 70, 321, 1148, 2381, 2532, 2781
PpuMI RGGWCCY 2 cut(s) 1866, 3318
PscI ACATGT 1 cut(s) 2920
PshAI GACNNNNGTC 1 cut(s) 897
PshBI ATTAAT 2 cut(s) 1053, 2760
PsiI TTATAA 1 cut(s) 182
Psp124BI GAGCTC 1 cut(s) 53
Psp1406I AACGTT 1 cut(s) 2999
Psp5II RGGWCCY 2 cut(s) 1866, 3318
Psp6I CCWGG 3 cut(s) 264, 1522, 2133
PspFI CCCAGC 3 cut(s) 529, 2791, 3796
PspGI CCWGG 3 cut(s) 264, 1522, 2133
PspN4I GGNNCC 6 cut(s) 296, 1867, 1868, 2880, 3319, 3320
PspPI GGNCC 6 cut(s) 892, 1866, 1940, 3176, 3187, 3318
PspPPI RGGWCCY 2 cut(s) 1866, 3318
PspXI VCTCGAGB 1 cut(s) 2389
PsrI GAACNNNNNNTAC 2 cut(s) 243, 275
PstNI CAGNNNCTG 1 cut(s) 1006
PsuI RGATCY 2 cut(s) 3030, 3343
PvuII CAGCTG 1 cut(s) 529
RseI CAYNNNNRTG 3 cut(s) 2562, 2921, 3845
SacI GAGCTC 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 1379
SatI GCNGC 2 cut(s) 2167, 3157
Sau3AI GATC 5 cut(s) 432, 480, 2012, 3030, 3343
Sau96I GGNCC 6 cut(s) 892, 1866, 1940, 3176, 3187, 3318
ScaI AGTACT 3 cut(s) 2415, 2596, 3286
SchI GAGTC 7 cut(s) 29, 71, 322, 1148, 2381, 2532, 2782
ScrFI CCNGG 3 cut(s) 266, 1524, 2135
SduI GDGCHC 4 cut(s) 53, 408, 2592, 3046
SfaNI GCATC 7 cut(s) 325, 742, 1893, 2100, 3292, 3357, 3379
SfcI CTRYAG 3 cut(s) 286, 308, 2734
Sfr274I CTCGAG 1 cut(s) 2389
SinI GGWCC 6 cut(s) 892, 1866, 1940, 3176, 3187, 3318
SlaI CTCGAG 1 cut(s) 2389
SmiMI CAYNNNNRTG 3 cut(s) 2562, 2921, 3845
SmlI CTYRAG 5 cut(s) 299, 1879, 2389, 2474, 3145
SmoI CTYRAG 5 cut(s) 299, 1879, 2389, 2474, 3145
SphI GCATGC 1 cut(s) 1535
SseBI AGGCCT 1 cut(s) 656
SsiI CCGC 5 cut(s) 1598, 1906, 2019, 3403, 3775
SspI AATATT 3 cut(s) 598, 967, 1689
SstI GAGCTC 1 cut(s) 53
StuI AGGCCT 1 cut(s) 656
StyD4I CCNGG 3 cut(s) 264, 1522, 2133
StyI CCWWGG 5 cut(s) 895, 2094, 2289, 2453, 3750
TaiI ACGT 5 cut(s) 1440, 1704, 2330, 3002, 3331
TscAI CASTG 2 cut(s) 220, 1036
TseFI GTSAC 4 cut(s) 1328, 2710, 2914, 3017
TseI GCWGC 2 cut(s) 2166, 3156
Tsp45I GTSAC 4 cut(s) 1328, 2710, 2914, 3017
TspGWI ACGGA 2 cut(s) 962, 3538
TspRI CASTG 2 cut(s) 220, 1036
Vha464I CTTAAG 1 cut(s) 1879
VneI GTGCAC 1 cut(s) 404
VpaK11BI GGWCC 6 cut(s) 892, 1866, 1940, 3176, 3187, 3318
VspI ATTAAT 2 cut(s) 1053, 2760
XbaI TCTAGA 3 cut(s) 901, 1285, 1303
XceI RCATGY 5 cut(s) 359, 1535, 1853, 1950, 2924
XcmI CCANNNNNNNNNTGG 1 cut(s) 809
XhoI CTCGAG 1 cut(s) 2389
XmiI GTMKAC 6 cut(s) 490, 542, 1372, 2536, 3440, 3697
XmnI GAANNNNTTC 2 cut(s) 996, 3791
ZrmI AGTACT 3 cut(s) 2415, 2596, 3286
Zsp2I ATGCAT 3 cut(s) 1771, 2973, 3372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.