FvH4_1g18121

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000042
Physical Location & Seq
Reverse (-)
10528862 .. 10531608
2747 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18121.t1

Sequence Viewer

Length: 2457 bp
ATGGAGATTCTTAGTTCAGTTGCTACAAAAGTTGTCGACTATGCAGTTGATCCAATTTTACGCCAGGGAGGGTATATAATTCATTGCAAAAGCAACCTTCATACACTACATACTCGAGTTGAGGAACTGGTGGCTACGAGAGGGCGGGTGCATAATGAAATTGTTGCAGCTGAAAGAAGAGGTGAAACAATCAACCCTGACGTCCAGTTCTGGTTGAAAAATGTTGATGACACCACCGGAAAAGCAGGCGAGTTGTTGAAAGATGAACACCAGGCAAAGATGAAGTGTCTCCATGGCTTTTGTCCTAATCTGTTGACCCGTCATCAGCTAAGCAGAAAATCAACAAAGTTGTTGGTGGAGGTTGTTGAATTGAATGGAAAAGGAGTTTTTCCAAGCATTTCATATGGTGGTCGTGCTGAAGAGGTATTTCTCACTTCTACCGCAGATTATGAGGCATTTGATTCAAGGATTTCAACTGTGACGAGAATCATAGATGAATTGCAAAAACTTGATACGAAGGATTGGATTGGGGTGTTTGGTATTGGAGGGGTTGGAAAGACCACACTGGCGGAAGAAGTTGTTAGACAAGTTATGAAAGATGGGTTATTTGAGGACGTGGTCATGGTTCGGGATGTGAAAGAGAATCCAGATATTGGTCGACTTCAAAAAGAAATTGCTGAAAAGCTAGGTATGTATTCCAATGCTCTAGAAAGTCACTCTAAAGCTGAAAGAGCACGTCAGATATGTGGAAGGATAAACAACAAGAAGACACTTGTTGTTTTAGATGATATTTGGAGTTTCTTTGATTTAAAAGAGGTGGGACTTCCAGATGTGGCAACTTGTAAAATATTGATGACATCAAGAAGTCGAGAAGTATCAAAAAAGATGGGTGTAAAGAAAGAATTTCAGCTTGCGGTGTTAGGGGAAAAAGAAAGTTGGAGTTTATTTGAAAGCAAGGCGGGTGATGGTGTTAAAGATCCCGATATACAAACTGTAGCAGCCCAAGTAGCCAAAAGATGTGGAGGTTTGCCAGTTTTAATTGTCACAGTTGCAAGCAGTTTACGAAATACTACTTTGGTAGAATGGAAAGATGCTCTGAGACGCCTGCAAACGTTTGGGAAAAGTGGATCGACCAAAGAAGTATTCCTTACTCTAGAGTGGAGTTATGATCGACTGGATGATGAGGAGCTCAAGTCGTTGTTCTTGCTATGTGGAGTTGTTGCATGGAAGAACTCTATCTTTCTCGATGACTTGTTCAAATTTGCTATGGGGTTGGGTTTGCTTAAAGGCGTTGATACTGTGGATGATGCACGAAATTCATTGCTTTCATTGGTTCAAAAGCTGAAAGGTTTTTCTCTATTGCTAGACCATGATGACGAAGGATTCGTCAGAATGCATGATCTTGTGCATGATGTTGCTAATGATATTGCATCTAGGAATGGACAACTCATATCAGTAGCATGCGGAGCTGAGTTCAAAAACTGGCCAAAAAACTCAAAATGCAGCAAGATCTCAACCAAATGCAGTAGTCTTGCTGAAGTTTCTGAAGTTTTGGGATGCAAAAAATTAGAAATGTTCTATTTGCGCTGTGAAGACGGGTACTACATGCCGGTCCAACTCCCAAACAGTTTTTTCGCAAACATGGAAAATCTCAAAGTGTTGGGTTTAAGAAATGTGAAGATTAATTTTACATCTCTCAAGTTTTTGAAGAATCTTCAGGCGTTGTGTTTAGAGCACTGCGAGGTAGAAGACATAGCTCTAGTTGGGGAGCTAAGGAAATTAGAAATTCTCAGCTTGGTACTCTCCAGTATTGAACAACTTCCCGAAGAAGTTGGAGAATTGAGTAGTCTGCGAATGTTGGATTTGACCGGTTGCAATTCCCTTAAAGTGATTGCACCTAATGTTTTATCAAGATTGACAAGACTAGAAGACTTGAGAATGAGAAATAGCAGTATCGGATGGGAGGCTGATGATGAAGGTGAGAGAAGAAATTCTAGTCTCTCGGAGCTCAAGCACTTATCTCTACTTACAGCATTAGAAATACATATTCCAGATCCTGATATGCTTCCAAAGGACTTGTTCTCCGAAAAAGTAGAAAGATTCCAATCATTCCATATATATATTGGCGCAATATATAATTATGATGTAAGGAGCGTGAACACCTTGGCACTCGAGTTCACTACCGGCGACGAATTGGACGAAGGTCTAAAGACGTTGGTGAAGAGATCTGATGAGTTGAGCTTGAGAGGGGGAGATAATTATGTTAATGAAATTGCCTATCAATTATCAGAAGGAGAAGCTTTTCGGAAAGTGAAGCATCTTTATCTAATCCGACTAGATTCTACATGCATCATTGATTGGAAGGTTGTGTTTTCCAGATTAACAACCTTGAAAGTGGTTGCCTGTCATGGAATAACGTTCTTGTTATCGTCTTCAGTGGCCAGAAGTTTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

819

Amino Acids

91.79

Weight (kDa)

5.91

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 159 - 322 4.1e-34 NB-ARC domain
LRR_14 PF23598 547 - 694 7.3e-11 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 204
AccB7I CCANNNNNTGG 1 cut(s) 653
AccI GTMKAC 2 cut(s) 36, 658
AciI CCGC 6 cut(s) 145, 441, 569, 914, 959, 1464
AclI AACGTT 2 cut(s) 1112, 2417
AclWI GGATC 4 cut(s) 44, 971, 1135, 2048
AcoI YGGCCR 2 cut(s) 1484, 2439
AcsI RAATTY 5 cut(s) 902, 1259, 1315, 1785, 1990
AcuI CTGAAG 5 cut(s) 438, 1557, 1566, 1700, 2418
AcyI GRCGYC 2 cut(s) 201, 1102
AfaI GTAC 2 cut(s) 1601, 1800
AfiI CCNNNNNNNGG 1 cut(s) 653
AgeI ACCGGT 1 cut(s) 1868
AjiI CACGTC 2 cut(s) 616, 737
AjnI CCWGG 2 cut(s) 63, 270
AjuI GAANNNNNNNTTGG 2 cut(s) 1127, 1159
Alw21I GWGCWC 4 cut(s) 736, 1191, 1737, 2010
Alw26I GTCTC 3 cut(s) 293, 1093, 2003
AlwI GGATC 4 cut(s) 44, 971, 1135, 2048
AlwNI CAGNNNCTG 1 cut(s) 2057
Ama87I CYCGRG 2 cut(s) 114, 2171
AoxI GGCC 2 cut(s) 1484, 2439
ApeKI GCWGC 3 cut(s) 167, 998, 1503
ApoI RAATTY 5 cut(s) 902, 1259, 1315, 1785, 1990
ArsI GACNNNNNNTTYG 4 cut(s) 1367, 1371, 1399, 1403
AseI ATTAAT 1 cut(s) 1683
AsiGI ACCGGT 1 cut(s) 1868
Asp700I GAANNNNTTC 3 cut(s) 1818, 1990, 2301
AspLEI GCGC 2 cut(s) 1587, 2129
AspS9I GGNCC 1 cut(s) 1612
AsuHPI GGTGA 4 cut(s) 194, 974, 1991, 2230
AvaI CYCGRG 2 cut(s) 114, 2171
AvaII GGWCC 1 cut(s) 1612
BalI TGGCCA 2 cut(s) 1486, 2441
BanII GRGCYC 2 cut(s) 1191, 2010
BbsI GAAGAC 5 cut(s) 773, 1599, 1755, 1935, 2424
Bbv12I GWGCWC 4 cut(s) 736, 1191, 1737, 2010
BbvI GCAGC 3 cut(s) 179, 1010, 1515
BccI CCATC 4 cut(s) 593, 880, 959, 1953
BciT130I CCWGG 2 cut(s) 65, 272
BcoDI GTCTC 3 cut(s) 293, 1093, 2003
BfaI CTAG 9 cut(s) 686, 707, 1154, 1364, 1434, 1760, 1925, 1995, 2336
BfmI CTRYAG 1 cut(s) 993
BglII AGATCT 2 cut(s) 1509, 2225
BisI GCNGC 3 cut(s) 168, 999, 1504
BlpI GCTNAGC 1 cut(s) 329
BlsI GCNGC 3 cut(s) 169, 1000, 1505
Bme1390I CCNGG 2 cut(s) 65, 272
Bme18I GGWCC 1 cut(s) 1612
BmeT110I CYCGRG 2 cut(s) 114, 2171
BmgBI CACGTC 2 cut(s) 616, 737
BmgT120I GGNCC 1 cut(s) 1612
BmrFI CCNGG 2 cut(s) 65, 272
BmsI GCATC 6 cut(s) 1081, 1297, 1439, 1547, 2326, 2358
BoxI GACNNNNGTC 1 cut(s) 2202
BpiI GAAGAC 5 cut(s) 773, 1599, 1755, 1935, 2424
BpmI CTGGAG 1 cut(s) 1789
Bpu10I CCTNAGC 1 cut(s) 1772
Bpu1102I GCTNAGC 1 cut(s) 329
BpuEI CTTGAG 5 cut(s) 1175, 1682, 1954, 1994, 2263
BsaBI GATNNNNATC 1 cut(s) 2104
BsaHI GRCGYC 2 cut(s) 201, 1102
BsaJI CCNNGG 3 cut(s) 64, 292, 2163
BsaWI WCCGGW 2 cut(s) 236, 1868
BsaXI ACNNNNNCTCC 4 cut(s) 1178, 1208, 2066, 2096
Bsc4I CCNNNNNNNGG 1 cut(s) 653
Bse118I RCCGGY 3 cut(s) 1609, 1868, 2183
Bse1I ACTGG 7 cut(s) 132, 205, 570, 1031, 1179, 1487, 1806
Bse3DI GCAATG 2 cut(s) 82, 1319
Bse8I GATNNNNATC 1 cut(s) 2104
BseBI CCWGG 2 cut(s) 65, 272
BseDI CCNNGG 3 cut(s) 64, 292, 2163
BseGI GGATG 5 cut(s) 637, 1183, 1309, 1562, 1964
BseJI GATNNNNATC 1 cut(s) 2104
BseLI CCNNNNNNNGG 1 cut(s) 653
BseMI GCAATG 2 cut(s) 82, 1319
BseMII CTCAG 3 cut(s) 1088, 1461, 1804
BseNI ACTGG 7 cut(s) 132, 205, 570, 1031, 1179, 1487, 1806
BseRI GAGGAG 1 cut(s) 1199
BseXI GCAGC 3 cut(s) 179, 1010, 1515
BshFI GGCC 2 cut(s) 1486, 2441
BshTI ACCGGT 1 cut(s) 1868
BsiHKAI GWGCWC 4 cut(s) 736, 1191, 1737, 2010
BsiHKCI CYCGRG 2 cut(s) 114, 2171
BsiSI CCGG 4 cut(s) 237, 1610, 1869, 2184
BslFI GGGAC 1 cut(s) 834
BslI CCNNNNNNNGG 1 cut(s) 653
BsmAI GTCTC 3 cut(s) 293, 1093, 2003
BsmBI CGTCTC 1 cut(s) 1093
BsmFI GGGAC 1 cut(s) 834
BsmI GAATGC 1 cut(s) 1398
BsnI GGCC 2 cut(s) 1486, 2441
BsoBI CYCGRG 2 cut(s) 114, 2171
Bsp1286I GDGCHC 4 cut(s) 736, 1191, 1737, 2010
Bsp143I GATC 8 cut(s) 49, 976, 1127, 1168, 1399, 1509, 2053, 2225
Bsp1720I GCTNAGC 1 cut(s) 329
Bsp19I CCATGG 1 cut(s) 292
BspACI CCGC 6 cut(s) 145, 441, 569, 914, 959, 1464
BspANI GGCC 2 cut(s) 1486, 2441
BspCNI CTCAG 3 cut(s) 1089, 1462, 1803
BspPI GGATC 4 cut(s) 44, 971, 1135, 2048
BsrDI GCAATG 2 cut(s) 82, 1319
BsrFI RCCGGY 3 cut(s) 1609, 1868, 2183
BsrI ACTGG 7 cut(s) 132, 205, 570, 1031, 1179, 1487, 1806
BssAI RCCGGY 3 cut(s) 1609, 1868, 2183
BssECI CCNNGG 3 cut(s) 64, 292, 2163
BssMI GATC 8 cut(s) 49, 976, 1127, 1168, 1399, 1509, 2053, 2225
BssNI GRCGYC 2 cut(s) 201, 1102
BssT1I CCWWGG 2 cut(s) 292, 2163
Bst2UI CCWGG 2 cut(s) 65, 272
Bst4CI ACNGT 5 cut(s) 478, 994, 1048, 1300, 1628
Bst6I CTCTTC 3 cut(s) 172, 414, 2216
BstACI GRCGYC 2 cut(s) 201, 1102
BstC8I GCNNGC 5 cut(s) 247, 912, 1054, 1106, 1462
BstDEI CTNAG 6 cut(s) 11, 329, 1097, 1470, 1772, 1790
BstDSI CCRYGG 1 cut(s) 292
BstF5I GGATG 5 cut(s) 637, 1183, 1309, 1562, 1964
BstHHI GCGC 2 cut(s) 1587, 2129
BstKTI GATC 8 cut(s) 52, 979, 1130, 1171, 1402, 1512, 2056, 2228
BstMAI GTCTC 3 cut(s) 293, 1093, 2003
BstMBI GATC 8 cut(s) 49, 976, 1127, 1168, 1399, 1509, 2053, 2225
BstMWI GCNNNNNNNGC 3 cut(s) 731, 1007, 1466
BstNI CCWGG 2 cut(s) 65, 272
BstNSI RCATGY 3 cut(s) 1464, 1609, 2349
BstPAI GACNNNNGTC 1 cut(s) 2202
BstSCI CCNGG 2 cut(s) 63, 270
BstSFI CTRYAG 1 cut(s) 993
BstV1I GCAGC 3 cut(s) 179, 1010, 1515
BstV2I GAAGAC 5 cut(s) 773, 1599, 1755, 1935, 2424
BstX2I RGATCY 4 cut(s) 976, 1509, 2053, 2225
BstYI RGATCY 4 cut(s) 976, 1509, 2053, 2225
BsuRI GGCC 2 cut(s) 1486, 2441
BtgI CCRYGG 1 cut(s) 292
BtrI CACGTC 2 cut(s) 616, 737
BtsCI GGATG 5 cut(s) 637, 1183, 1309, 1562, 1964
BtsI GCAGTG 1 cut(s) 1735
BtsIMutI CAGTG 3 cut(s) 563, 1735, 2442
Cac8I GCNNGC 5 cut(s) 247, 912, 1054, 1106, 1462
CaiI CAGNNNCTG 1 cut(s) 2057
CfoI GCGC 2 cut(s) 1587, 2129
Cfr10I RCCGGY 3 cut(s) 1609, 1868, 2183
Cfr13I GGNCC 1 cut(s) 1612
CseI GACGC 1 cut(s) 1110
Csp6I GTAC 2 cut(s) 1600, 1799
CspAI ACCGGT 1 cut(s) 1868
CspCI CAANNNNNGTGG 2 cut(s) 1000, 1035
CviQI GTAC 2 cut(s) 1600, 1799
DdeI CTNAG 6 cut(s) 11, 329, 1097, 1470, 1772, 1790
DpnI GATC 8 cut(s) 51, 978, 1129, 1170, 1401, 1511, 2055, 2227
DpnII GATC 8 cut(s) 49, 976, 1127, 1168, 1399, 1509, 2053, 2225
DraI TTTAAA 1 cut(s) 810
EaeI YGGCCR 2 cut(s) 1484, 2439
Eam1104I CTCTTC 3 cut(s) 172, 414, 2216
EarI CTCTTC 3 cut(s) 172, 414, 2216
EciI GGCGGA 1 cut(s) 584
Ecl136II GAGCTC 2 cut(s) 1189, 2008
Eco130I CCWWGG 2 cut(s) 292, 2163
Eco24I GRGCYC 2 cut(s) 1191, 2010
Eco47I GGWCC 1 cut(s) 1612
Eco53kI GAGCTC 2 cut(s) 1189, 2008
Eco57I CTGAAG 5 cut(s) 438, 1557, 1566, 1700, 2418
Eco88I CYCGRG 2 cut(s) 114, 2171
EcoICRI GAGCTC 2 cut(s) 1189, 2008
EcoRII CCWGG 2 cut(s) 63, 270
EcoT14I CCWWGG 2 cut(s) 292, 2163
EcoT22I ATGCAT 2 cut(s) 1398, 2351
EcoT38I GRGCYC 2 cut(s) 1191, 2010
ErhI CCWWGG 2 cut(s) 292, 2163
Esp3I CGTCTC 1 cut(s) 1093
FalI AAGNNNNNCTT 2 cut(s) 1131, 1163
FaqI GGGAC 1 cut(s) 834
FauI CCCGC 2 cut(s) 138, 952
FauNDI CATATG 1 cut(s) 403
FblI GTMKAC 2 cut(s) 36, 658
Fnu4HI GCNGC 3 cut(s) 168, 999, 1504
FokI GGATG 5 cut(s) 644, 1190, 1316, 1569, 1971
FriOI GRGCYC 2 cut(s) 1191, 2010
Fsp4HI GCNGC 3 cut(s) 168, 999, 1504
FspBI CTAG 9 cut(s) 686, 707, 1154, 1364, 1434, 1760, 1925, 1995, 2336
GlaI GCGC 2 cut(s) 1586, 2128
GluI GCNGC 3 cut(s) 168, 999, 1504
GsuI CTGGAG 1 cut(s) 1789
HaeIII GGCC 2 cut(s) 1486, 2441
HapII CCGG 4 cut(s) 237, 1610, 1869, 2184
HgaI GACGC 1 cut(s) 1110
HhaI GCGC 2 cut(s) 1587, 2129
Hin1I GRCGYC 2 cut(s) 201, 1102
Hin6I GCGC 2 cut(s) 1585, 2127
HinP1I GCGC 2 cut(s) 1585, 2127
HincII GTYRAC 3 cut(s) 37, 315, 659
HindII GTYRAC 3 cut(s) 37, 315, 659
HindIII AAGCTT 1 cut(s) 2298
HinfI GANTC 8 cut(s) 7, 461, 486, 643, 1383, 1711, 2100, 2339
HpaII CCGG 4 cut(s) 237, 1610, 1869, 2184
HphI GGTGA 4 cut(s) 194, 974, 1991, 2230
Hpy166II GTNNAC 6 cut(s) 37, 315, 659, 1061, 2158, 2178
Hpy8I GTNNAC 6 cut(s) 37, 315, 659, 1061, 2158, 2178
Hpy99I CGWCG 1 cut(s) 2192
HpyAV CCTTC 8 cut(s) 107, 511, 744, 1373, 1970, 2195, 2285, 2356
HpyCH4III ACNGT 5 cut(s) 478, 994, 1048, 1300, 1628
HpyCH4IV ACGT 6 cut(s) 201, 615, 736, 1112, 2213, 2417
HpyF10VI GCNNNNNNNGC 3 cut(s) 731, 1007, 1466
HpyF3I CTNAG 6 cut(s) 11, 329, 1097, 1470, 1772, 1790
HpySE526I ACGT 6 cut(s) 201, 615, 736, 1112, 2213, 2417
Hsp92I GRCGYC 2 cut(s) 201, 1102
HspAI GCGC 2 cut(s) 1585, 2127
Kzo9I GATC 8 cut(s) 49, 976, 1127, 1168, 1399, 1509, 2053, 2225
LmnI GCTCC 5 cut(s) 1186, 1466, 1768, 2005, 2151
Lsp1109I GCAGC 3 cut(s) 179, 1010, 1515
LweI GCATC 6 cut(s) 1081, 1297, 1439, 1547, 2326, 2358
MaeI CTAG 9 cut(s) 686, 707, 1154, 1364, 1434, 1760, 1925, 1995, 2336
MaeII ACGT 6 cut(s) 201, 615, 736, 1112, 2213, 2417
MaeIII GTNAC 3 cut(s) 478, 713, 1042
MalI GATC 8 cut(s) 51, 978, 1129, 1170, 1401, 1511, 2055, 2227
MboI GATC 8 cut(s) 49, 976, 1127, 1168, 1399, 1509, 2053, 2225
MflI RGATCY 4 cut(s) 976, 1509, 2053, 2225
MhlI GDGCHC 4 cut(s) 736, 1191, 1737, 2010
MlsI TGGCCA 2 cut(s) 1486, 2441
MluNI TGGCCA 2 cut(s) 1486, 2441
MmeI TCCRAC 6 cut(s) 532, 917, 1639, 1813, 1839, 2356
Mox20I TGGCCA 2 cut(s) 1486, 2441
Mph1103I ATGCAT 2 cut(s) 1398, 2351
MroXI GAANNNNTTC 3 cut(s) 1818, 1990, 2301
MscI TGGCCA 2 cut(s) 1486, 2441
MseI TTAA 9 cut(s) 809, 972, 1037, 1284, 1667, 1683, 1884, 2265, 2381
Msp20I TGGCCA 2 cut(s) 1486, 2441
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 4 cut(s) 237, 1610, 1869, 2184
MspR9I CCNGG 2 cut(s) 65, 272
Mva1269I GAATGC 1 cut(s) 1398
MvaI CCWGG 2 cut(s) 65, 272
MwoI GCNNNNNNNGC 3 cut(s) 731, 1007, 1466
NcoI CCATGG 1 cut(s) 292
NdeI CATATG 1 cut(s) 403
NdeII GATC 8 cut(s) 49, 976, 1127, 1168, 1399, 1509, 2053, 2225
NmuCI GTSAC 3 cut(s) 478, 713, 1042
NsiI ATGCAT 2 cut(s) 1398, 2351
NspI RCATGY 3 cut(s) 1464, 1609, 2349
PaeI GCATGC 1 cut(s) 1464
PaeR7I CTCGAG 2 cut(s) 114, 2171
PcsI WCGNNNNNNNCGW 2 cut(s) 1383, 2196
PctI GAATGC 1 cut(s) 1398
PdmI GAANNNNTTC 3 cut(s) 1818, 1990, 2301
PfeI GAWTC 8 cut(s) 7, 461, 486, 643, 1383, 1711, 2100, 2339
PflFI GACNNNGTC 1 cut(s) 617
PflMI CCANNNNNTGG 1 cut(s) 653
PinAI ACCGGT 1 cut(s) 1868
PkrI GCNGC 3 cut(s) 169, 1000, 1505
PshAI GACNNNNGTC 1 cut(s) 2202
PshBI ATTAAT 1 cut(s) 1683
Psp124BI GAGCTC 2 cut(s) 1191, 2010
Psp1406I AACGTT 2 cut(s) 1112, 2417
Psp6I CCWGG 2 cut(s) 63, 270
PspGI CCWGG 2 cut(s) 63, 270
PspPI GGNCC 1 cut(s) 1612
PspXI VCTCGAGB 2 cut(s) 114, 2171
PstNI CAGNNNCTG 1 cut(s) 2057
PsuI RGATCY 4 cut(s) 976, 1509, 2053, 2225
PsyI GACNNNGTC 1 cut(s) 617
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 2 cut(s) 1601, 1800
RsaNI GTAC 2 cut(s) 1600, 1799
SacI GAGCTC 2 cut(s) 1191, 2010
SalI GTCGAC 2 cut(s) 35, 657
SaqAI TTAA 9 cut(s) 809, 972, 1037, 1284, 1667, 1683, 1884, 2265, 2381
SatI GCNGC 3 cut(s) 168, 999, 1504
Sau3AI GATC 8 cut(s) 49, 976, 1127, 1168, 1399, 1509, 2053, 2225
Sau96I GGNCC 1 cut(s) 1612
ScrFI CCNGG 2 cut(s) 65, 272
SduI GDGCHC 4 cut(s) 736, 1191, 1737, 2010
SfaNI GCATC 6 cut(s) 1081, 1297, 1439, 1547, 2326, 2358
SfcI CTRYAG 1 cut(s) 993
Sfr274I CTCGAG 2 cut(s) 114, 2171
SinI GGWCC 1 cut(s) 1612
SlaI CTCGAG 2 cut(s) 114, 2171
SmlI CTYRAG 7 cut(s) 114, 1190, 1697, 1933, 2009, 2171, 2242
SmoI CTYRAG 7 cut(s) 114, 1190, 1697, 1933, 2009, 2171, 2242
SphI GCATGC 1 cut(s) 1464
SsiI CCGC 6 cut(s) 145, 441, 569, 914, 959, 1464
SspI AATATT 1 cut(s) 849
SspMI CTAG 9 cut(s) 686, 707, 1154, 1364, 1434, 1760, 1925, 1995, 2336
SstI GAGCTC 2 cut(s) 1191, 2010
StyD4I CCNGG 2 cut(s) 63, 270
StyI CCWWGG 2 cut(s) 292, 2163
TaaI ACNGT 5 cut(s) 478, 994, 1048, 1300, 1628
TaiI ACGT 6 cut(s) 204, 618, 739, 1115, 2216, 2420
TaqI TCGA 8 cut(s) 36, 115, 658, 868, 1130, 1171, 1245, 2172
TfiI GAWTC 8 cut(s) 7, 461, 486, 643, 1383, 1711, 2100, 2339
Tru1I TTAA 9 cut(s) 809, 972, 1037, 1284, 1667, 1683, 1884, 2265, 2381
Tru9I TTAA 9 cut(s) 809, 972, 1037, 1284, 1667, 1683, 1884, 2265, 2381
TscAI CASTG 3 cut(s) 570, 1742, 2442
TseFI GTSAC 3 cut(s) 478, 713, 1042
TseI GCWGC 3 cut(s) 167, 998, 1503
Tsp45I GTSAC 3 cut(s) 478, 713, 1042
TspRI CASTG 3 cut(s) 570, 1742, 2442
Tth111I GACNNNGTC 1 cut(s) 617
Van91I CCANNNNNTGG 1 cut(s) 653
VpaK11BI GGWCC 1 cut(s) 1612
VspI ATTAAT 1 cut(s) 1683
XapI RAATTY 5 cut(s) 902, 1259, 1315, 1785, 1990
XbaI TCTAGA 2 cut(s) 706, 1153
XceI RCATGY 3 cut(s) 1464, 1609, 2349
XcmI CCANNNNNNNNNTGG 1 cut(s) 2120
XhoI CTCGAG 2 cut(s) 114, 2171
XmiI GTMKAC 2 cut(s) 36, 658
XmnI GAANNNNTTC 3 cut(s) 1818, 1990, 2301
XspI CTAG 9 cut(s) 686, 707, 1154, 1364, 1434, 1760, 1925, 1995, 2336
ZraI GACGTC 1 cut(s) 202
Zsp2I ATGCAT 2 cut(s) 1398, 2351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.