Rorug01G0252700

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000042
Physical Location & Seq
Reverse (-)
36117574 .. 36141612
24039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0252700.1

Sequence Viewer

Length: 8955 bp
ATGGAAGAAGAAGAGGAGAGGAAGAAGGAGGTTGAAAATATTTCCAGGAAGGATACAAATAATCATGAGCTGGCTAGTGGTGTACAGGAAAATGTTGATCCATCTCCACAGGAAGCTACCGTTAATACTGACGGTAAAGCTGATGCAGGACGGAATAGTGTAACATTGCAGGTAACAGATTCTGTACCTAAAGTTTTGGATGAAGACCAATTCGAGCAGGTCAACTTGAAAGAACAAGATAAGAATGTTGGTGCATCTCATAGCAGTCATGTGGAATCAATTCAGTCATCAAATTCAGATAATGCCAGACAATCATACGGTGGGTTTGAAGTTGCCTCACAGTCTTTTACATCAGAATTCGATACTTCTATGGTTGATGAAATGCATGATGATCAGTCTACCTGGAGCCCACGTCAGGACAGTCACTTTGGTCACTCTAACTACACATCTATGTCGGCTGCTAGTTTTGATTCTTCTTCTTATTATGGGGATGCAGGTTATTCTCCTGTTAGTTCACCCCCAAAACCAAGGCAGAAACCTGTTATGCCCAATGTATCTCCGGAGTTACTACATTTGGTGGATTCTGCCATCATGGGAAAGCCTGAAAGTTTGGACAAACTGAAGAATATTGTTAGTGGTGTGGAGAGTTTTGGAACTGGGGAGGAAATGGAGAGCATTGCTTACTTGGTAGTTGATTCGCTTATTGCAACAATGGGTGGTGTTGAAAGTTATGAAGAAGATGAGGATAACAATCCTCCTAGCGTGATGCTAAACTCTCGAGCTGCCATTGTCGCAGGCGAACTTATTCCCTCGCTTCCTGGGTTTGGTGATAGTCATGCTATCATGTCCCCTCGCACACGAATGGTTAGGGGGCTGCTTGCAATATTACGGGCTTGTACAAGAAACAGAGCGATGTGCTCAATGGCTGGTTTATTAGGAGTTCTATTAAGGTCAGCAGAGAAGATTTTTATGCAGGATGTTAATTCAACGGAGCAAATGAGATGGGATGGAACTCCCTTATGTTACTGCATTCAACATTTAGCAGGGCATTCACTTAGTGTAGTTGATATGCACAGATGGTTTCAAGTCATTACTCGAACGCTTACCACAGTATGGGCAACCCGATTAATGCTTGCACTGGAGAAGGCAATGGGTGGAAAGGAGTCGAGGGGACCTGCATGTACTTTTGAGTTTGATGGTGAAAGTTCAGGTTTGCTTGGTCCAGGGGAAAGCCGTTGGCCATTTGCCAATGGGTATGCGTTTGCAACATGGATTTACATTGAATCATTTGCAGATACATTGAATGCAGCAACCGCTGCAGCAGCAATTGCTGCAGCTGCTGCTGCCAAATCAGGAAAATCGTCGGCAATGTCGGCTGCTGCCGCTGCCAGTGCACTTGCTGGTGAAGGCACAGCACACATGCCACGGTTGTTCAGTTTCTTATCTGCTGACAATCAGGGGTTAGAGGCATACTTCCACGCACAGTTTTTGGTGGTCGAATGTGGTAGTGGAAAGGGTAAGAAATCTTCATTACATTTTACGCATGCATTCAAGCCGCAATGCTGGTACTTCATTGGTCTAGAGCATACTTGCAAGCAAGGGCTGCTTGGGAAAGCAGACAGTGAATTAAGATTGTATATTGATGGTTCGCTGTACGAAACTCGACCTTTTGAGTTCCCCCGGATCTCTAAGCCACTTGCATTTTGCTGCATTGGGACAAATCCTCCTGCTACAATGGCTGGATTACAACGTCGTCGCCGTCAATGCCCTTTGTTTGCTGAGATGGGGCCTGTTTATATTTTTAAGGAACCAATTGGTCCAGAAAGGATGTCACGTTTGGCTTCTAGGGGAGGGGACGCACTTCCTTCTTTTGGTCATGGGGCAGGGCTGCCATGGCTAGCAACAAACGTGGAAGTGCAAAATATGGCAGAGGAAAGTTCACTTTTGGATGCAGAAATTGGAGGACTCATTCACCTTTTCTACCACCCCAGTTTGCTTAGCGGGCGGTTCTGTCCAGATGCTTCCCCGAGTGGTGCCTCAGGCATGCTTCGACGACCAGCAGAGGTTCTTGGGCAGGTCCATATTGCTACACGAATGCGGCCTGTAGCAGCTCTATGGGCCTTTTCCTATGGGGGTCCTATGTCTTTACTTCCTTTAGCAGTTAGCAATGTGGATAAAGATACCCTTGAACCACAACAAGGGAATCCCTCTTTGTCTTTGGCTACCACTGCTCTTGCTGCTCCGATATTCCGAATAATTAGCACTGCTATTCGACACCCTTGGAACAGTGAAGAGTTGTGTCGTACCAAAGGGCCTGAGGTTCTGTCAAGAATCTTGAACTATCTTTTGCAAACTTTGTCTTCACTTTATGCTGGAAAACAAAATGGTGTGGGCGATGAGGAGCTTGTTGCTTCTGTTTTATCACTATGTCAATCTCAGCAGAAGAACTATGCACTCAAGGTGCAGCTTTTCAGTACATTGCTATTGGATCTAAAAGTTTGGAGCTTATGTAACTATGGGCTACAAAAGAAGCTTCTTTCATCACTTGCAGACATGGTTTTTACAGAGTCATCAGTAATGCGAGATGCTAATGCCATTCAGATGCTTCTTGACAGTTGCAGAAGATGCTATTGGACAATTCGCGAAAAGGATTCAGTGAATACCTTTTCTCTTTCACTTCATGAGGCAAGCCGGCCTGTGGGTGAGGTGAATGCTTTGGTTGATGAACTCTTAGTCATTATTGAACTTCTTCTAGTAGCAGCACCTCCTTCATTGGCTTCAGATGACATTCGTTGTTTACTGGGGTTCATGGTTGACTGCCCACAACCCAATCAGGTTGCAAGGGTTTTGCATCTGATTTATAGATTGGTGGTACAGCCAAATACATCAAGAGCTCAAACATTTGCAGAGGCATTTATAGCTTGTGGTGGGATAGAGACCCTTCTTGTTTTGTTGCAACGAGAAGCCAAAGCGGGTGACTACAGTGTTCCAGAATCCATGACCAAGAATGATGAAGTTTTGTCAGTCCAGCCACCTGAGCAAGATGGTAGCGTTGGGGGAGTTTCTGAAAAGAATCAGGATGATGAAGTAGAATCGTCAAAGGAAAAGGAAAATTTGCATGAGAAAGTTGTTGAATCCCAATCCCATGATGGAGCTAGCAGTCCGATTTCTGTTTCTCCTGAGTTGAACATTGCAAGAATGACTTCTGCTTCAGAAAGTACATTTATAAAGAATCTGGGTGGTATAGCTCTCTCAATTAGTGCTGATAATGCAAGGAATAATGTTTACAATATTGATAAAAGTGATGGCGTTGTTGCCCGAATCATCGGGCTCTTAGGTGCTTTAGTTGCTTCTGGGTACTTGAAAATTGGTTCAACTGCTTCCTCGGATATGACTAACAACCTTTTAGGAAGTGCACTGCATGATGGAGGGGGTAGCATGTTTGAAGATAAAGTTTCCCTTTTACTTTTTGCTTTACAGAAGGCTTTCCAAGCAGCACCAAACCGATTGTTGACCAGTAATGTGTATGCAGCATTGTTGGGGGCGTCGATAAATGCCTCTTCAACTGATGAGGGGTTGAACTTCTATGATTCTGGTCATCAATTTGAACATTTGCAACTTCTTTTGGTTCTCTTGCGGTCACTTCCATATGCACCCAAGGCTTTTCAAACCCGAGCGCTACAGGATCTTCTGTTTTTGGCTTGCAGTCAGTCAGAAAATAGAAGCAGTCTTACAAACATGGAGGAATGGCCTGAATGGATTCTTGAGGTTCTCATCTCTAACTATGAGATGGGTGCAAGCAAACATTCTGATTCCTCAAGATCAGGAGACATAGAAGACCTCATACACAACTTCCTGATTATAATGTTAGAGCATTCCATGCGCCAGAAGGATGGCTGGAAGGATATTGAAGCTACAATTCATTGTGCAGAGTGGCTTTCTATAGTGGGTGGATCAAGCACCGGAGACCAACGGGTTAGGCGCGAGGAATCATTACCCATATTTAAACGGAGGCTATTAGGTGGTTTGCTGGACTTCGCAGCTAGAGAACTCCAGGTTCAGACTCAAGTTATTGCTGCGGCATCTGCTAATGTGGCATCAGGGACTTCATCACCAAAAGATGCCAAGGCAGAAGCAGAAAATGTGGCTCAACTTTCTGTAGCATTAGTAGAGAATGCAATAGTGATACTAATGCTTGTTGAGGATCATTTACGGTTACAGTGCAAACTGTCTTCTGTTTCACGTGCAACAGATAGTTCTCCATCTCCCCTTTCTCTTGTATCTCCCCTCAATAACCAGTCAAATTCATCGAATACAGTTGGTGGAGATTCATTTGGGGCTTTGGGTGATCGCAAATCCTTATCTAGTGATTCTGGGGGACTTCCTCTTGATCTTCTTGCTTCAATGGCTGATGCAAATGGTCAAGTATCTGCAGCAGTGATGGAACGTCTTACTGCTGCAGCAGCGGCTGAGCCTTATGGGTCTGTTTCATGTGCTTTTGTATCATATGGAAGCTGTACTGCGGATCTAGCAATGGGGTGGAAGTATAGGAGCAGATTGTGGTATGGAGTAGGCATTCCTTCAAACACAGCAGCCTTTGGTGGTGGTGGCAGCGGTAGGGAATCTTGGATGGCTGCACTGGAGAAGGATGCAAATGGAAACTGGATTGAGCTTCCTTTGGTGAAAAAGTCTGTTGCAATGCTCCAAGCTTTACTATTAGATGATTCGGGACTTGGTGGTGGACTTGGCATAGGTGGTGGATCTGGTACTGGAATGGGAGGCATGGCAGCACTCTACCAGTTATTGGACAGTGACCAACCATTCTTATGCATGCTCCGAATGACACTTCTTTCGATGAGAGAAGAAGATGATGGTGAAGAGAGCATGCTTATGAGCAATGTAAGCATAGATGATGGGAAATCAGATGGGAGGAAACCACGATCAGCATTGCTGTGGAGTGTGCTTTCACCTGTTCTAAACATGCCAATTTCTGATTCCAAGAGGCAGAGAGTGTTGGTTGCTTCCTGTGTTCTTTATTCTGAGTTATATCATGCTGTTGGCAGGGACGGAAAGCCTCTCCGTAAACTTTACCTTGAGGCCATTGTACCTCCATTTGTTGCTGTTTTGAGGAGGTGGCGGCCAATTTTGGCTGGAATTCATGAACTTGCAACTGCTGATGGTCTGAATCCTCTTATGGTTGAAGACCGTGCATTGGCTGCTGATGCCCTTCCAATAGAGGCTGCTCTTGCAATGATCTCTCCAGCTTGGGCCGCTGCTTTTGCATCACCACCTGCTGCAATGGCACTGGCAATGATAGCTGCTGGTGCCTCTGGTGGAGAAACTCCAGCTCCTCCGACAACTTCTCAACTTAGGCGTGATTCCTCATTGCTTGAGCGGAAAACTAATAAGCTTCACACATTTTCGAGCTTCCAAAAACCTTTAGAGCAACCTGAAAAAGCCCCAGCTCTACCAAAGGATAAGGCCGCTGCAAAAGCTGCTGCCTTGGCTGCAGCACGTGATCTTGAACGTAATAATAAAATCGGTTCTGGAAGGGGCCTTAGTGCTGTGGCAATGGCCACATCTGCACAGCGGAGGAGTGCTGGTGACATGGAGCGTGTGAAGAGATGGAATATTGCTGAAGCAATGGAAGTTGCCTGGATGGAATGTTTGCAGCCAGTTGATACCAGATCAGTCTATGGAAAAGATTTTAATGCTTTATCGTATAAATTTATTGCTGTTCTTGTGGCAAGTTTTGCTTTAGCAAGAAACATCCAACGATCTGAGGTTGACAGACGTTCTCAAGTTGATTTAATAACTCGTCATCGTTTGGGCAAAGGAAGTCGTGCATGGCGCAAGCTCATGCATTGCTTGATTGAGATGAAGTGTCTTCTTGGGCCATCTGGAGACCAATTATGCAATCAATCACCTGTTTTCTGGAAGCTAGATTTTATGGAAAGTTCTTCTAGGATGAGACGATGTGTGAGGAGGAATTATGAAGGTTCTGACCATTTTGGTGCTGCTGCCAATTTTGAGGATCCTATTAAGACAAAAGAACAGGAAAATGTCATAAGTTCCTCAAATGCTCCTATTTTGGCAGCAGAAGCAATTGCCGTGGAGGCAGTAAACGAAGATGATGAACAAGGGGAGATTGAAAGTATGGATGGTAGACCCTATGGTATAGAAGAGAGTGGGGAGAATCATTCACGACTGTCTGAAACAGCTGAGAAAAGCCTGCTGGCACCTGCTGAATCTGATGATGCTCAAGTTGCTGGTGAACCAGGCTTGGTCCAAAGTTCGTCACCAATTGCGGCTGGATATGTTCCTAGTGAACTTGATGAAAGAATTGTTCTTGAGCTTCCTTCGTCAATGGTTCGCCCATTGAGGGTTATAAGTGGAACTTTTCAGGTAACAAGTAGAAGAATAAATTTCATAGTTGATAACAGTGATGTGAATGGTTCATTGGATGAACTAGATTGCAAGGAAATGAGAGAAGAACATAAGGATCGTAGCTGGTCTATGTCATCCCTTCATCAAATATACAGCCGAAGATATCTCCTAAGAAGAAGTGCTCTGGAGCTATTTTTGGTTGATCGTTCAAACTTCTTCTTTGATTTTGGGAGTACGGAAGGACGAAGAAACGCATATCGAGCTATTGTTCAAGCACGGCCTCCCCATTTGAATAATATATATCTTGCAACTCAGAGACCTGAACAACTTCTGAAGAGAACACAGCTTATGGAGCGTTGGGCTAGGTGGGAGATCAGCAATTTCGAATATCTAATGCAGCTCAATACCCTTGCGGGGCGTAGTTACAATGACATTACTCAGTATCCTGTTTTCCCATGGATCCTTTCTGATTACAGTTCGAAGACTTTGGATCTCGCAGACCCTTCTTCTTATCGAGACCTTTCAAAGCCTGTTGGTGCTTTGAATTCTGATCGTCTGGAAAAATTTCAAGAGAGATATTCCAGCTTCGAGGACCCAGTTATACCCAAATTCCATTATGGTTCTCATTATTCCAGCGCTGGAACAGTGCTATATTATCTTGTTAGAGTTGAACCGTTTACAACTCTGTCAATTCAACTGCAAGGCGGAAAGTTTGATCATGCAGATCGGATGTTTTCAGATATTGCTTCTACTTGGAATGGAGTTACTGAAGACATGAGTGATGTGAAGGAATTGGTTCCCGAGTTGTTCTACCTCCCTGAGATCTTAACCAATGAAAATTCAATCGATTTTGGTACAACACAAACAGGCGGAAAACTTGGTTCTGTCAAACTTCCACCATGGGCAGAAAACCCAATTGATTTCATTCATAAGCATCGGAAGGCTCTTGAAAGCGAACACGTATCTGCACATTTGCATGAATGGATTGATCTTATATTTGGGTATAAGCAACGTGGTAAAGAAGCTATATTGGCAAATAATGTTTTCTTCTACATTACCTATGAAGGGACTGTTGATATTGATAAGATATCAGATCCAGTACAGCAACGTGCAACACAAGACCAGATTGCATACTTTGGTCAAACGCCATCGCAACTTCTTACCATCCCTCACTTGAAGAAGATGCCACTAGCAGATGTTCTTCATTTGCAGACCATCTTCCGGAACCCAAAAGAAGTCAAACAATATGCTGTTCCTGCTCCTGAGCGTTGCAATCTTCCTGCAGCTGGTATTCATGCATCTTCAGATACTGTCGTAATTGTTGATATGCATGCACCAGCAGCACATGTTGCACAGCACAAGTGGCAGCCGAACACACCTGACGGTCAAGGTATGCCTTTCCTCTTTCAACACGGAAAGCCTGCAGCAAGCTCCACTGGTGGAGCATTTATGCGTATGTTCAAAGGGCCTGCTGGATCTGGTTCCGAGGATTGGCTTTTTCCTCAAGCGCTAGCATTTGCTACATCTGGAATCAGAAGCTCGGCTATAGTTTCCATAACATGTGACAAAGAAGTCATCACTGGTGGGCATGTGGACAACAGTATCAAGCTAGTTTCATCAGATGGAGCAAAAACCTTGGAGACAGCCTTTGGCCACTGCGCTCCAGTCACTTGTCTTGGACTTTCACCTGATAGCAACTACCTTGTGACGGGATCCAGAGATACTACTGTTTTACTTTGGAGAATACATAGAGCATTTACTTCTCGCTCAAGCAGCGTATCAGAGTCTTCTAGTGGGACACCAGGCACAACCAGCAATAGTAATTTATCACATATATTGGCAGACAAAAGCAGGAGGCGTCGTATTGAAGGCCCCATACACGTTCTTCGAGGCCACCAGAGGGAAATACTTTCTTGCTGTGTGAGCTCAGATCTTGGGATAGTTGTTTCATGCTCCCAATCATCAGATGTGCTCTTGCATTCTATAAGAAGAGGTCGGCTGATCAGAAGGCTGCCTGGTGTGGAGGCCCATGCTGTCTGCCTCTCATCTGAGGGAGTTGTATTGACTTGGAATAAAACACTCAATACTTTGAGTACCTTTACTCTTAATGGATCTCTCATTGCCAGAGCTCAGTTACCGGTCTCTGGTAGCATCAGTTGTATGGAAATTTCTGTTGATGGATGGAGTGCTTTGATAGGAATAAACTCGTCTATAGAAACTGATAGAACCTTCGGCGGCAGCTGGGATTCTAAGCTTAAGAACACAGAGTTTGAGGATCTTTCACTGGAGTCAGAGGGAACTGAAGAAATCAACAGATTGGACACTCCATCGCCTTCAATTTGCTTCCTGGATATTCACACACTGAAGGTTTTTCATATATTGAAGTTGGGAGAAGGAAGGGAGATCACATCTCTTGCTCTAAACACAGACAATACAAACCTTCTGGTGTCGACTGCAGATAAACAGTTGATAATTTTCACTGATCCAGCTTTGAGCTTGAAAGTGGTGGATCAGATGCTCAAGCTTGGTTGGGAAGGTGATGGGCTAAGTCCCCTAATAAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

2984

Amino Acids

325.21

Weight (kDa)

5.53

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4704 PF15787 684 - 990 3.7e-59 Neurobeachin/BDCP, DUF4704 alpha solenoid region
DUF4704 PF15787 1197 - 1309 1.3e-08 Neurobeachin/BDCP, DUF4704 alpha solenoid region
PH_BEACH PF14844 2122 - 2219 1e-26 PH domain associated with Beige/BEACH
Beach PF02138 2247 - 2522 1.9e-121 Beige/BEACH domain
WD40_Prp19 PF24814 2640 - 2801 1.4e-06 Prp19 WD40 domain
NBCH_WD40 PF20426 2644 - 2854 3.7e-22 Neurobeachin beta propeller domain
Beta-prop_WDR5 PF25175 2644 - 2806 1.2e-10 WDR5 beta-propeller domain
Beta-prop_WDR5 PF25175 2646 - 2714 3e-06 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 2646 - 2711 2.7e-06 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 2646 - 2784 1.6e-08 WDR3 second beta-propeller domain
WD40_WDHD1_1st PF24817 2646 - 2726 1.1e-06 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 2651 - 2725 4.5e-07 THOC3 beta-propeller domain
WD40 PF00400 2677 - 2709 2.7e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 3227, 3863, 6389
AarI CACCTGC 2 cut(s) 5299, 6250
AasI GACNNNNNNGTC 1 cut(s) 7958
Acc36I ACCTGC 7 cut(s) 160, 208, 485, 1183, 2065, 5299, 6250
AccB1I GGYRCC 3 cut(s) 2033, 5324, 6238
AccB7I CCANNNNNTGG 2 cut(s) 1113, 4804
AccBSI CCGCTC 1 cut(s) 5395
AccI GTMKAC 3 cut(s) 398, 6166, 8837
AccII CGCG 2 cut(s) 2643, 3984
AccIII TCCGGA 2 cut(s) 559, 7608
AcoI YGGCCR 4 cut(s) 1238, 5138, 5574, 8038
AcuI CTGAAG 9 cut(s) 641, 2763, 3195, 5658, 6740, 7176, 7674, 8709, 8771
AcvI CACGTG 2 cut(s) 4244, 5516
AcyI GRCGYC 2 cut(s) 3545, 8245
AdeI CACNNNGTG 1 cut(s) 1058
AfeI AGCGCT 3 cut(s) 3678, 7024, 7896
AflII CTTAAG 1 cut(s) 8642
AflIII ACRYGT 4 cut(s) 7345, 7732, 7946, 8266
AgeI ACCGGT 1 cut(s) 8524
AjiI CACGTC 1 cut(s) 413
AjuI GAANNNNNNNTTGG 6 cut(s) 2614, 2646, 4978, 5010, 6443, 6475
Alw21I GWGCWC 8 cut(s) 920, 1396, 2896, 3418, 6571, 8315, 8361, 8518
Alw26I GTCTC 9 cut(s) 2930, 3822, 3960, 5898, 5965, 6697, 6897, 8021, 8533
Alw44I GTGCAC 2 cut(s) 1392, 3414
AlwNI CAGNNNCTG 4 cut(s) 182, 1340, 4469, 7697
Ama87I CYCGRG 4 cut(s) 777, 2026, 3672, 7187
Aor13HI TCCGGA 2 cut(s) 559, 7608
Aor51HI AGCGCT 3 cut(s) 3678, 7024, 7896
ApaLI GTGCAC 2 cut(s) 1392, 3414
ArsI GACNNNNNNTTYG 4 cut(s) 410, 442, 4834, 4866
AseI ATTAAT 1 cut(s) 1127
AsiGI ACCGGT 1 cut(s) 8524
Asp700I GAANNNNTTC 9 cut(s) 279, 804, 2748, 3202, 3485, 3759, 6714, 6951, 7182
AspLEI GCGC 7 cut(s) 3679, 3885, 3984, 5853, 7025, 7897, 8048
AsuC2I CCSGG 1 cut(s) 1681
AsuII TTCGAA 2 cut(s) 6771, 6866
AsuNHI GCTAGC 3 cut(s) 1897, 3155, 7897
AvaI CYCGRG 4 cut(s) 777, 2026, 3672, 7187
AvaII GGWCC 7 cut(s) 1172, 1220, 1817, 2077, 2135, 6286, 6979
AxyI CCTNAGG 2 cut(s) 2038, 2316
BaeGI GKGCMC 2 cut(s) 1396, 3418
BaeI ACNNNNGTAYC 6 cut(s) 7686, 7719, 7972, 8005, 8100, 8133
BalI TGGCCA 3 cut(s) 1240, 5576, 8040
BamHI GGATCC 3 cut(s) 6034, 6846, 8099
BanI GGYRCC 3 cut(s) 2033, 5324, 6238
BanII GRGCYC 5 cut(s) 410, 2896, 3333, 8315, 8518
BarI GAAGNNNNNNTAC 8 cut(s) 1510, 1542, 3715, 3747, 3828, 3860, 8247, 8279
BbrPI CACGTG 2 cut(s) 4244, 5516
BbsI GAAGAC 9 cut(s) 210, 2352, 3843, 4224, 5208, 5879, 6875, 7164, 8166
Bbv12I GWGCWC 8 cut(s) 920, 1396, 2896, 3418, 6571, 8315, 8361, 8518
BceAI ACGGC 4 cut(s) 1218, 1743, 6095, 6680
BciVI GTATCC 2 cut(s) 46, 6840
BclI TGATCA 3 cut(s) 391, 7102, 8388
BcnI CCSGG 1 cut(s) 1681
BcoDI GTCTC 9 cut(s) 2930, 3822, 3960, 5898, 5965, 6697, 6897, 8021, 8533
BfoI RGCGCY 3 cut(s) 3680, 7026, 7898
BfrI CTTAAG 1 cut(s) 8642
BfuAI ACCTGC 7 cut(s) 160, 208, 485, 1183, 2065, 5299, 6250
BfuI GTATCC 2 cut(s) 46, 6840
BglI GCCNNNNNGGC 1 cut(s) 6116
BglII AGATCT 2 cut(s) 7209, 8317
BlpI GCTNAGC 2 cut(s) 1997, 4470
Bme18I GGWCC 7 cut(s) 1172, 1220, 1817, 2077, 2135, 6286, 6979
BmeT110I CYCGRG 4 cut(s) 777, 2026, 3672, 7187
BmgBI CACGTC 1 cut(s) 413
BmrI ACTGGG 4 cut(s) 666, 1983, 2810, 6977
BmtI GCTAGC 3 cut(s) 1901, 3159, 7901
BmuI ACTGGG 4 cut(s) 666, 1983, 2810, 6977
BpiI GAAGAC 9 cut(s) 210, 2352, 3843, 4224, 5208, 5879, 6875, 7164, 8166
Bpu10I CCTNAGC 2 cut(s) 3036, 7650
Bpu1102I GCTNAGC 2 cut(s) 1997, 4470
Bpu14I TTCGAA 2 cut(s) 6771, 6866
BpuMI CCSGG 1 cut(s) 1681
Bsa29I ATCGAT 1 cut(s) 7233
BsaAI YACGTR 3 cut(s) 4244, 5516, 7348
BsaBI GATNNNNATC 1 cut(s) 750
BsaHI GRCGYC 2 cut(s) 3545, 8245
BsaI GGTCTC 6 cut(s) 2930, 3960, 5898, 6697, 6897, 8533
BsaWI WCCGGW 4 cut(s) 559, 3962, 7608, 8524
Bse118I RCCGGY 2 cut(s) 2691, 8524
Bse21I CCTNAGG 2 cut(s) 2038, 2316
Bse8I GATNNNNATC 1 cut(s) 750
BseAI TCCGGA 2 cut(s) 559, 7608
BseCI ATCGAT 1 cut(s) 7233
BseJI GATNNNNATC 1 cut(s) 750
BseRI GAGGAG 6 cut(s) 29, 2414, 5143, 5340, 5608, 5998
BseSI GKGCMC 2 cut(s) 1396, 3418
BseYI CCCAGC 2 cut(s) 5461, 8628
BsgI GTGCAG 5 cut(s) 2483, 3948, 4620, 5568, 7338
Bsh1236I CGCG 2 cut(s) 2643, 3984
BshNI GGYRCC 3 cut(s) 2033, 5324, 6238
BshTI ACCGGT 1 cut(s) 8524
BshVI ATCGAT 1 cut(s) 7233
BsiHKAI GWGCWC 8 cut(s) 920, 1396, 2896, 3418, 6571, 8315, 8361, 8518
BsiHKCI CYCGRG 4 cut(s) 777, 2026, 3672, 7187
BsiSI CCGG 6 cut(s) 560, 1681, 2692, 3963, 7609, 8525
BsmAI GTCTC 9 cut(s) 2930, 3822, 3960, 5898, 5965, 6697, 6897, 8021, 8533
BsmBI CGTCTC 1 cut(s) 5965
Bso31I GGTCTC 6 cut(s) 2930, 3960, 5898, 6697, 6897, 8533
BsoBI CYCGRG 4 cut(s) 777, 2026, 3672, 7187
Bsp119I TTCGAA 2 cut(s) 6771, 6866
Bsp13I TCCGGA 2 cut(s) 559, 7608
Bsp1407I TGTACA 2 cut(s) 82, 896
Bsp1720I GCTNAGC 2 cut(s) 1997, 4470
Bsp19I CCATGG 3 cut(s) 1892, 6842, 7286
Bsp68I TCGCGA 1 cut(s) 2643
BspDI ATCGAT 1 cut(s) 7233
BspEI TCCGGA 2 cut(s) 559, 7608
BspFNI CGCG 2 cut(s) 2643, 3984
BspHI TCATGA 3 cut(s) 64, 2680, 5158
BspMAI CTGCAG 8 cut(s) 1321, 1336, 4435, 4462, 5512, 7672, 7813, 8845
BspMI ACCTGC 7 cut(s) 160, 208, 485, 1183, 2065, 5299, 6250
BspOI GCTAGC 3 cut(s) 1901, 3159, 7901
BspT104I TTCGAA 2 cut(s) 6771, 6866
BspT107I GGYRCC 3 cut(s) 2033, 5324, 6238
BspTI CTTAAG 1 cut(s) 8642
BspTNI GGTCTC 6 cut(s) 2930, 3960, 5898, 6697, 6897, 8533
BsrBI CCGCTC 1 cut(s) 5395
BsrFI RCCGGY 2 cut(s) 2691, 8524
BsrGI TGTACA 2 cut(s) 82, 896
BssAI RCCGGY 2 cut(s) 2691, 8524
BssNI GRCGYC 2 cut(s) 3545, 8245
BssT1I CCWWGG 9 cut(s) 527, 1892, 2279, 3657, 4125, 5502, 6842, 7286, 8022
Bst6I CTCTTC 8 cut(s) 6, 2286, 3565, 4872, 5615, 6177, 6716, 8371
BstACI GRCGYC 2 cut(s) 3545, 8245
BstAFI CTTAAG 1 cut(s) 8642
BstAUI TGTACA 2 cut(s) 82, 896
BstBAI YACGTR 3 cut(s) 4244, 5516, 7348
BstBI TTCGAA 2 cut(s) 6771, 6866
BstDSI CCRYGG 5 cut(s) 1424, 1892, 6111, 6842, 7286
BstFNI CGCG 2 cut(s) 2643, 3984
BstH2I RGCGCY 3 cut(s) 3680, 7026, 7898
BstHHI GCGC 7 cut(s) 3679, 3885, 3984, 5853, 7025, 7897, 8048
BstMAI GTCTC 9 cut(s) 2930, 3822, 3960, 5898, 5965, 6697, 6897, 8021, 8533
BstSLI GKGCMC 2 cut(s) 1396, 3418
BstUI CGCG 2 cut(s) 2643, 3984
BstV2I GAAGAC 9 cut(s) 210, 2352, 3843, 4224, 5208, 5879, 6875, 7164, 8166
BstXI CCANNNNNNTGG 1 cut(s) 3893
Bsu15I ATCGAT 1 cut(s) 7233
Bsu36I CCTNAGG 2 cut(s) 2038, 2316
BsuI GTATCC 2 cut(s) 46, 6840
BsuTUI ATCGAT 1 cut(s) 7233
BtgI CCRYGG 5 cut(s) 1424, 1892, 6111, 6842, 7286
BtgZI GCGATG 4 cut(s) 926, 2409, 7521, 8700
BtrI CACGTC 1 cut(s) 413
BtsI GCAGTG 5 cut(s) 2226, 2262, 3416, 4443, 8041
BtuMI TCGCGA 1 cut(s) 2643
BveI ACCTGC 7 cut(s) 160, 208, 485, 1183, 2065, 5299, 6250
CaiI CAGNNNCTG 4 cut(s) 182, 1340, 4469, 7697
CciI TCATGA 3 cut(s) 64, 2680, 5158
CfoI GCGC 7 cut(s) 3679, 3885, 3984, 5853, 7025, 7897, 8048
Cfr10I RCCGGY 2 cut(s) 2691, 8524
ClaI ATCGAT 1 cut(s) 7233
CseI GACGC 3 cut(s) 1865, 3534, 8234
CspAI ACCGGT 1 cut(s) 8524
CspCI CAANNNNNGTGG 6 cut(s) 1890, 1925, 2215, 2250, 6093, 6128
DraI TTTAAA 1 cut(s) 4006
DraIII CACNNNGTG 1 cut(s) 1058
DrdI GACNNNNNNGTC 1 cut(s) 7958
DseDI GACNNNNNNGTC 1 cut(s) 7958
EaeI YGGCCR 4 cut(s) 1238, 5138, 5574, 8038
Eam1104I CTCTTC 8 cut(s) 6, 2286, 3565, 4872, 5615, 6177, 6716, 8371
EarI CTCTTC 8 cut(s) 6, 2286, 3565, 4872, 5615, 6177, 6716, 8371
EciI GGCGGA 2 cut(s) 7107, 7272
Ecl136II GAGCTC 3 cut(s) 2894, 8313, 8516
Eco130I CCWWGG 9 cut(s) 527, 1892, 2279, 3657, 4125, 5502, 6842, 7286, 8022
Eco24I GRGCYC 5 cut(s) 410, 2896, 3333, 8315, 8518
Eco31I GGTCTC 6 cut(s) 2930, 3960, 5898, 6697, 6897, 8533
Eco32I GATATC 2 cut(s) 6551, 7476
Eco47I GGWCC 7 cut(s) 1172, 1220, 1817, 2077, 2135, 6286, 6979
Eco47III AGCGCT 3 cut(s) 3678, 7024, 7896
Eco53kI GAGCTC 3 cut(s) 2894, 8313, 8516
Eco57I CTGAAG 9 cut(s) 641, 2763, 3195, 5658, 6740, 7176, 7674, 8709, 8771
Eco72I CACGTG 2 cut(s) 4244, 5516
Eco81I CCTNAGG 2 cut(s) 2038, 2316
Eco88I CYCGRG 4 cut(s) 777, 2026, 3672, 7187
EcoICRI GAGCTC 3 cut(s) 2894, 8313, 8516
EcoO109I RGGNCCY 8 cut(s) 1172, 1787, 2135, 2312, 5554, 6979, 7853, 8258
EcoRI GAATTC 3 cut(s) 356, 5154, 6931
EcoRV GATATC 2 cut(s) 6551, 7476
EcoT14I CCWWGG 9 cut(s) 527, 1892, 2279, 3657, 4125, 5502, 6842, 7286, 8022
EcoT22I ATGCAT 6 cut(s) 387, 1549, 4832, 5865, 7687, 7719
EcoT38I GRGCYC 5 cut(s) 410, 2896, 3333, 8315, 8518
ErhI CCWWGG 9 cut(s) 527, 1892, 2279, 3657, 4125, 5502, 6842, 7286, 8022
Esp3I CGTCTC 1 cut(s) 5965
FauI CCCGC 3 cut(s) 1994, 2965, 6793
FauNDI CATATG 2 cut(s) 3649, 4507
FbaI TGATCA 3 cut(s) 391, 7102, 8388
FblI GTMKAC 3 cut(s) 398, 6166, 8837
FriOI GRGCYC 5 cut(s) 410, 2896, 3333, 8315, 8518
GlaI GCGC 7 cut(s) 3678, 3884, 3983, 5852, 7024, 7896, 8047
GsaI CCCAGC 2 cut(s) 5465, 8632
HaeII RGCGCY 3 cut(s) 3680, 7026, 7898
HapII CCGG 6 cut(s) 560, 1681, 2692, 3963, 7609, 8525
HgaI GACGC 3 cut(s) 1865, 3534, 8234
HhaI GCGC 7 cut(s) 3679, 3885, 3984, 5853, 7025, 7897, 8048
Hin1I GRCGYC 2 cut(s) 3545, 8245
Hin6I GCGC 7 cut(s) 3677, 3883, 3982, 5851, 7023, 7895, 8046
HinP1I GCGC 7 cut(s) 3677, 3883, 3982, 5851, 7023, 7895, 8046
HincII GTYRAC 5 cut(s) 223, 2815, 3513, 5788, 8838
HindII GTYRAC 5 cut(s) 223, 2815, 3513, 5788, 8838
HindIII AAGCTT 5 cut(s) 2531, 4707, 5408, 8639, 8909
HpaII CCGG 6 cut(s) 560, 1681, 2692, 3963, 7609, 8525
Hpy99I CGWCG 6 cut(s) 1366, 1755, 1758, 2055, 3550, 8250
Hsp92I GRCGYC 2 cut(s) 3545, 8245
HspAI GCGC 7 cut(s) 3677, 3883, 3982, 5851, 7023, 7895, 8046
Kpn2I TCCGGA 2 cut(s) 559, 7608
KroI GCCGGC 1 cut(s) 2691
KroNI GCCGGC 1 cut(s) 2693
Ksp22I TGATCA 3 cut(s) 391, 7102, 8388
MbiI CCGCTC 1 cut(s) 5395
MfeI CAATTG 5 cut(s) 1326, 1812, 6105, 6303, 7302
MlsI TGGCCA 3 cut(s) 1240, 5576, 8040
MluNI TGGCCA 3 cut(s) 1240, 5576, 8040
MlyI GAGTC 6 cut(s) 1172, 1959, 2576, 4057, 8180, 8684
MmeI TCCRAC 2 cut(s) 5378, 5797
Mox20I TGGCCA 3 cut(s) 1240, 5576, 8040
Mph1103I ATGCAT 6 cut(s) 387, 1549, 4832, 5865, 7687, 7719
MroI TCCGGA 2 cut(s) 559, 7608
MroNI GCCGGC 1 cut(s) 2691
MroXI GAANNNNTTC 9 cut(s) 279, 804, 2748, 3202, 3485, 3759, 6714, 6951, 7182
MscI TGGCCA 3 cut(s) 1240, 5576, 8040
MslI CAYNNNNRTG 8 cut(s) 449, 860, 2600, 4825, 4889, 4951, 6012, 7362
Msp20I TGGCCA 3 cut(s) 1240, 5576, 8040
MspCI CTTAAG 1 cut(s) 8642
MspI CCGG 6 cut(s) 560, 1681, 2692, 3963, 7609, 8525
MunI CAATTG 5 cut(s) 1326, 1812, 6105, 6303, 7302
MvnI CGCG 2 cut(s) 2643, 3984
NaeI GCCGGC 1 cut(s) 2693
NciI CCSGG 1 cut(s) 1681
NcoI CCATGG 3 cut(s) 1892, 6842, 7286
NdeI CATATG 2 cut(s) 3649, 4507
NgoMIV GCCGGC 1 cut(s) 2691
NheI GCTAGC 3 cut(s) 1897, 3155, 7897
NmeAIII GCCGAG 1 cut(s) 7907
NruI TCGCGA 1 cut(s) 2643
NsiI ATGCAT 6 cut(s) 387, 1549, 4832, 5865, 7687, 7719
NspV TTCGAA 2 cut(s) 6771, 6866
PaeI GCATGC 5 cut(s) 1547, 2047, 4834, 4888, 7721
PaeR7I CTCGAG 1 cut(s) 777
PagI TCATGA 3 cut(s) 64, 2680, 5158
PaqCI CACCTGC 2 cut(s) 5299, 6250
PciI ACATGT 2 cut(s) 7732, 7946
PcsI WCGNNNNNNNCGW 1 cut(s) 1756
PdiI GCCGGC 1 cut(s) 2693
PdmI GAANNNNTTC 9 cut(s) 279, 804, 2748, 3202, 3485, 3759, 6714, 6951, 7182
PflMI CCANNNNNTGG 2 cut(s) 1113, 4804
PfoI TCCNGGA 2 cut(s) 44, 8733
PinAI ACCGGT 1 cut(s) 8524
PleI GAGTC 6 cut(s) 1171, 1959, 2575, 4057, 8179, 8683
PmaCI CACGTG 2 cut(s) 4244, 5516
PmlI CACGTG 2 cut(s) 4244, 5516
PpsI GAGTC 6 cut(s) 1171, 1959, 2575, 4057, 8179, 8683
Ppu21I YACGTR 3 cut(s) 4244, 5516, 7348
PpuMI RGGWCCY 3 cut(s) 1172, 2135, 6979
PscI ACATGT 2 cut(s) 7732, 7946
PshBI ATTAAT 1 cut(s) 1127
PsiI TTATAA 3 cut(s) 3227, 3863, 6389
Psp124BI GAGCTC 3 cut(s) 2896, 8315, 8518
Psp5II RGGWCCY 3 cut(s) 1172, 2135, 6979
PspCI CACGTG 2 cut(s) 4244, 5516
PspFI CCCAGC 2 cut(s) 5461, 8628
PspPPI RGGWCCY 3 cut(s) 1172, 2135, 6979
PstI CTGCAG 8 cut(s) 1321, 1336, 4435, 4462, 5512, 7672, 7813, 8845
PstNI CAGNNNCTG 4 cut(s) 182, 1340, 4469, 7697
PvuII CAGCTG 4 cut(s) 1337, 6221, 7673, 8628
RruI TCGCGA 1 cut(s) 2643
RseI CAYNNNNRTG 8 cut(s) 449, 860, 2600, 4825, 4889, 4951, 6012, 7362
SacI GAGCTC 3 cut(s) 2896, 8315, 8518
SalI GTCGAC 1 cut(s) 8836
SchI GAGTC 6 cut(s) 1172, 1959, 2576, 4057, 8180, 8684
Sfr274I CTCGAG 1 cut(s) 777
SfuI TTCGAA 2 cut(s) 6771, 6866
SinI GGWCC 7 cut(s) 1172, 1220, 1817, 2077, 2135, 6286, 6979
SlaI CTCGAG 1 cut(s) 777
SmiMI CAYNNNNRTG 8 cut(s) 449, 860, 2600, 4825, 4889, 4951, 6012, 7362
SphI GCATGC 5 cut(s) 1547, 2047, 4834, 4888, 7721
SspI AATATT 5 cut(s) 40, 628, 885, 3292, 5632
SstI GAGCTC 3 cut(s) 2896, 8315, 8518
StyI CCWWGG 9 cut(s) 527, 1892, 2279, 3657, 4125, 5502, 6842, 7286, 8022
TatI WGTACW 7 cut(s) 82, 896, 1181, 2474, 3218, 4517, 7486
TspGWI ACGGA 7 cut(s) 166, 1004, 4024, 5069, 5082, 6638, 7815
Van91I CCANNNNNTGG 2 cut(s) 1113, 4804
Vha464I CTTAAG 1 cut(s) 8642
VneI GTGCAC 2 cut(s) 1392, 3414
VpaK11BI GGWCC 7 cut(s) 1172, 1220, 1817, 2077, 2135, 6286, 6979
VspI ATTAAT 1 cut(s) 1127
XbaI TCTAGA 1 cut(s) 1579
XcmI CCANNNNNNNNNTGG 1 cut(s) 3146
XhoI CTCGAG 1 cut(s) 777
XmiI GTMKAC 3 cut(s) 398, 6166, 8837
XmnI GAANNNNTTC 9 cut(s) 279, 804, 2748, 3202, 3485, 3759, 6714, 6951, 7182
Zsp2I ATGCAT 6 cut(s) 387, 1549, 4832, 5865, 7687, 7719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.