FvH4_3g30920

Protein-lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003130
Physical Location & Seq
Forward (+)
24536289 .. 24542440
6152 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30920.t4

Sequence Viewer

Length: 954 bp
ATGGAATCCGACAGGTTGAACTCACCCAACACATTTACAATGGATTTGGAAGTAATGGGTCATGAGTTGCAGTTTGTTCAGGATCCTAACTCAAAGCATCTAGGCACTACGGTTTGGGATGCATCACTGGTATTTGCCAAGTTTCTGGAAAAGAACTCCAGAAGGGGAAAGTTCTCCCCGGCAAAACTTAAAGGGAAACGTGTCATTGAACTTGGAGCAGGTTGTGGAGTAGCTGGGTTTGGCATGGCATTATTGGGGTGTGATGTGGTTATGACAGATCAAGTTGAGGTATTGCCATTGCTTATGAGAAATGTTGAACGGAATACTTCAAGGATTACACAGATAAATTCTGCTTCTGAGTCATTTGGTTCTGTCCAGGTAGCTGAGTTAAGTTGGGGAAATGAGGATCATATAAGAGCAGTTGATCCACCATTTGACTACATCATTGGCACTGACGTTGTTTACAAAGAAGATCTCTTGGAGCCACTATTACAGACAATATTTGCATTGTCAGGGCCTAAAACTGCAATTTTGCTGGGCTATGAGATTCGTTCTACAAATGTCCATGCGCAAATGGTTGAGATGTGGAAAAGACACTTCGAGGTGAAACTTGTTCCAAATTCTAAGATGGATAGTACCTACCAACACCCAAGTATTCAACTTTTCATTATGCGATTGAAATCTCCATATGCAGAAAAAATAGTTGAGTGGACAGATCAAGACCTTGATGAAGTGGAGACAGCGGAGAATACAGCCGGGGTGGTGGATGAGAAAGTTGATACAAACGCAGTTAGAAGCAATGAAGAAAAAGGAAAAAATTTCTCTCTTTCTGGAAATGTTGAAGAAAATTGTGAGCCAGTTCCATTACCTCAGAATGGTAAACGTACTGATTGGGAAGCTAGAAGATATGGCTCAATGGCTGCACGGCTTCTGCATGATGTCAAAATCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

318

Amino Acids

35.58

Weight (kDa)

5.23

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 37 - 193 1.9e-31 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 570
Acc36I ACCTGC 1 cut(s) 209
AciI CCGC 1 cut(s) 743
AclWI GGATC 4 cut(s) 77, 90, 414, 419
AcsI RAATTY 3 cut(s) 346, 619, 817
AfaI GTAC 2 cut(s) 637, 886
AfiI CCNNNNNNNGG 1 cut(s) 875
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 7 cut(s) 19, 209, 317, 330, 659, 679, 842
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 3 cut(s) 233, 383, 899
AluI AGCT 3 cut(s) 233, 383, 899
Alw26I GTCTC 1 cut(s) 731
AlwI GGATC 4 cut(s) 77, 90, 414, 419
AoxI GGCC 1 cut(s) 515
ApeKI GCWGC 1 cut(s) 920
ApoI RAATTY 3 cut(s) 346, 619, 817
AspLEI GCGC 1 cut(s) 571
AspS9I GGNCC 1 cut(s) 515
AsuC2I CCSGG 2 cut(s) 179, 757
AsuHPI GGTGA 2 cut(s) 15, 616
BamHI GGATCC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 907
BccI CCATC 1 cut(s) 622
BceAI ACGGC 1 cut(s) 941
BciT130I CCWGG 1 cut(s) 377
BcnI CCSGG 2 cut(s) 179, 757
BcoDI GTCTC 1 cut(s) 731
BfaI CTAG 2 cut(s) 101, 900
BfuAI ACCTGC 1 cut(s) 209
BglII AGATCT 1 cut(s) 472
BisI GCNGC 1 cut(s) 921
BlsI GCNGC 1 cut(s) 922
Bme1390I CCNGG 3 cut(s) 179, 377, 757
BmgT120I GGNCC 1 cut(s) 515
BmiI GGNNCC 2 cut(s) 84, 483
BmrFI CCNGG 3 cut(s) 179, 377, 757
BmsI GCATC 3 cut(s) 106, 109, 131
BpmI CTGGAG 1 cut(s) 142
BpuMI CCSGG 2 cut(s) 179, 757
BsaBI GATNNNNATC 1 cut(s) 679
BsaJI CCNNGG 2 cut(s) 177, 756
Bsc4I CCNNNNNNNGG 1 cut(s) 875
Bse1I ACTGG 2 cut(s) 132, 857
Bse3DI GCAATG 2 cut(s) 296, 805
Bse8I GATNNNNATC 1 cut(s) 679
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 2 cut(s) 177, 756
BseGI GGATG 2 cut(s) 124, 772
BseJI GATNNNNATC 1 cut(s) 679
BseLI CCNNNNNNNGG 1 cut(s) 875
BseMI GCAATG 2 cut(s) 296, 805
BseMII CTCAG 3 cut(s) 348, 375, 884
BseNI ACTGG 2 cut(s) 132, 857
BseXI GCAGC 1 cut(s) 907
BseYI CCCAGC 2 cut(s) 233, 535
BsgI GTGCAG 1 cut(s) 906
BshFI GGCC 1 cut(s) 517
BsiSI CCGG 2 cut(s) 179, 756
BslI CCNNNNNNNGG 1 cut(s) 875
BsmAI GTCTC 1 cut(s) 731
BsnI GGCC 1 cut(s) 517
Bsp143I GATC 6 cut(s) 82, 277, 406, 424, 472, 715
BspACI CCGC 1 cut(s) 743
BspANI GGCC 1 cut(s) 517
BspCNI CTCAG 3 cut(s) 349, 376, 883
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 84, 483
BspMI ACCTGC 1 cut(s) 209
BspPI GGATC 4 cut(s) 77, 90, 414, 419
BsrDI GCAATG 2 cut(s) 296, 805
BsrI ACTGG 2 cut(s) 132, 857
BssECI CCNNGG 2 cut(s) 177, 756
BssMI GATC 6 cut(s) 82, 277, 406, 424, 472, 715
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 1 cut(s) 112
BstDEI CTNAG 4 cut(s) 357, 384, 624, 870
BstF5I GGATG 2 cut(s) 124, 772
BstHHI GCGC 1 cut(s) 571
BstKTI GATC 6 cut(s) 85, 280, 409, 427, 475, 718
BstMAI GTCTC 1 cut(s) 731
BstMBI GATC 6 cut(s) 82, 277, 406, 424, 472, 715
BstNI CCWGG 1 cut(s) 377
BstSCI CCNGG 3 cut(s) 177, 375, 755
BstV1I GCAGC 1 cut(s) 907
BstX2I RGATCY 2 cut(s) 82, 472
BstXI CCANNNNNNTGG 1 cut(s) 145
BstYI RGATCY 2 cut(s) 82, 472
BsuRI GGCC 1 cut(s) 517
BtsCI GGATG 2 cut(s) 124, 772
BtsIMutI CAGTG 2 cut(s) 125, 450
BveI ACCTGC 1 cut(s) 209
CciI TCATGA 1 cut(s) 61
CfoI GCGC 1 cut(s) 571
Cfr13I GGNCC 1 cut(s) 515
Csp6I GTAC 2 cut(s) 636, 885
CviAII CATG 4 cut(s) 62, 244, 566, 935
CviQI GTAC 2 cut(s) 636, 885
DdeI CTNAG 4 cut(s) 357, 384, 624, 870
DpnI GATC 6 cut(s) 84, 279, 408, 426, 474, 717
DpnII GATC 6 cut(s) 82, 277, 406, 424, 472, 715
EcoO109I RGGNCCY 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 375
EcoT22I ATGCAT 1 cut(s) 124
FaeI CATG 4 cut(s) 65, 247, 569, 938
FatI CATG 4 cut(s) 61, 243, 565, 934
FauNDI CATATG 1 cut(s) 688
Fnu4HI GCNGC 1 cut(s) 921
FokI GGATG 2 cut(s) 131, 779
Fsp4HI GCNGC 1 cut(s) 921
FspBI CTAG 2 cut(s) 101, 900
FspI TGCGCA 1 cut(s) 570
GlaI GCGC 1 cut(s) 570
GluI GCNGC 1 cut(s) 921
GsaI CCCAGC 2 cut(s) 237, 539
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 1 cut(s) 517
HapII CCGG 2 cut(s) 179, 756
HhaI GCGC 1 cut(s) 571
Hin1II CATG 4 cut(s) 65, 247, 569, 938
Hin6I GCGC 1 cut(s) 569
HinP1I GCGC 1 cut(s) 569
HinfI GANTC 3 cut(s) 5, 359, 547
HpaII CCGG 2 cut(s) 179, 756
HphI GGTGA 2 cut(s) 15, 616
Hpy166II GTNNAC 3 cut(s) 463, 711, 881
Hpy188I TCNGA 3 cut(s) 10, 358, 873
Hpy188III TCNNGA 6 cut(s) 62, 80, 146, 159, 719, 831
Hpy8I GTNNAC 3 cut(s) 463, 711, 881
HpyAV CCTTC 1 cut(s) 156
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 3 cut(s) 199, 456, 883
HpyCH4V TGCA 7 cut(s) 70, 122, 506, 527, 692, 923, 934
HpyF3I CTNAG 4 cut(s) 357, 384, 624, 870
HpySE526I ACGT 3 cut(s) 199, 456, 883
Hsp92II CATG 4 cut(s) 65, 247, 569, 938
HspAI GCGC 1 cut(s) 569
Kzo9I GATC 6 cut(s) 82, 277, 406, 424, 472, 715
LmnI GCTCC 2 cut(s) 215, 481
Lsp1109I GCAGC 1 cut(s) 907
LweI GCATC 3 cut(s) 106, 109, 131
MaeI CTAG 2 cut(s) 101, 900
MaeII ACGT 3 cut(s) 199, 456, 883
MalI GATC 6 cut(s) 84, 279, 408, 426, 474, 717
MboI GATC 6 cut(s) 82, 277, 406, 424, 472, 715
MboII GAAGA 4 cut(s) 482, 815, 854, 915
MflI RGATCY 2 cut(s) 82, 472
MluCI AATT 5 cut(s) 346, 528, 619, 817, 847
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 4 cut(s) 280, 397, 595, 879
Mph1103I ATGCAT 1 cut(s) 124
MseI TTAA 2 cut(s) 189, 389
MspA1I CMGCKG 1 cut(s) 743
MspI CCGG 2 cut(s) 179, 756
MspR9I CCNGG 3 cut(s) 179, 377, 757
MvaI CCWGG 1 cut(s) 377
NciI CCSGG 2 cut(s) 179, 757
NdeI CATATG 1 cut(s) 688
NdeII GATC 6 cut(s) 82, 277, 406, 424, 472, 715
NlaIII CATG 4 cut(s) 65, 247, 569, 938
NlaIV GGNNCC 2 cut(s) 84, 483
NsbI TGCGCA 1 cut(s) 570
NsiI ATGCAT 1 cut(s) 124
PagI TCATGA 1 cut(s) 61
PfeI GAWTC 2 cut(s) 5, 547
PkrI GCNGC 1 cut(s) 922
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 375
PspFI CCCAGC 2 cut(s) 233, 535
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 2 cut(s) 84, 483
PspPI GGNCC 1 cut(s) 515
PsuI RGATCY 2 cut(s) 82, 472
RsaI GTAC 2 cut(s) 637, 886
RsaNI GTAC 2 cut(s) 636, 885
SaqAI TTAA 2 cut(s) 189, 389
SatI GCNGC 1 cut(s) 921
Sau3AI GATC 6 cut(s) 82, 277, 406, 424, 472, 715
Sau96I GGNCC 1 cut(s) 515
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 3 cut(s) 179, 377, 757
SfaNI GCATC 3 cut(s) 106, 109, 131
Sse9I AATT 5 cut(s) 346, 528, 619, 817, 847
SsiI CCGC 1 cut(s) 743
SspI AATATT 1 cut(s) 501
SspMI CTAG 2 cut(s) 101, 900
StyD4I CCNGG 3 cut(s) 177, 375, 755
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 3 cut(s) 202, 459, 886
TaqI TCGA 1 cut(s) 600
TasI AATT 5 cut(s) 346, 528, 619, 817, 847
TfiI GAWTC 2 cut(s) 5, 547
Tru1I TTAA 2 cut(s) 189, 389
Tru9I TTAA 2 cut(s) 189, 389
TscAI CASTG 2 cut(s) 132, 457
TseI GCWGC 1 cut(s) 920
TspDTI ATGAA 3 cut(s) 655, 744, 816
TspGWI ACGGA 1 cut(s) 334
TspRI CASTG 2 cut(s) 132, 457
XapI RAATTY 3 cut(s) 346, 619, 817
XspI CTAG 2 cut(s) 101, 900
Zsp2I ATGCAT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.