Rroxscaffold_1G00022990

Protein-lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003130
Physical Location & Seq
Reverse (-)
28437897 .. 28444014
6118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00022990.1

Sequence Viewer

Length: 969 bp
ATGGAACCCGACAGGTTGAACTCGCCCAGCACATTTACAATGGATTTGGAAGTTTTGGGGCATGAGTTGCAGTTCATTCAGGATCCTAATTCAAAGCATCTAGGAACTACAGTTTGGGATGCATCACTAGTATTCGCCAAGTTTCTGGAAAAGAATTCCAGAAGGGGAAAGTTCTCCCCATCAAAACTTAAAGGGAAACGTGTCATTGAACTTGGAGCAGGCATGGCATTACTGGGATGTGATGTGGTTATGACAGATCAAGTTGAGGTTTTGCCATTGCTAATGAGAAATGTTGAACGGAATACTTCAAGGATTACACAGATGAATCCTGGTTCTGAGTCATTTGGTTCGGTCCAGGTAGCAGAGTTAAATTGGGGAAATGAGGATCATATAAGAGCCGTTGATCCACCATTTGACTACATCATTGGCACTGACGTTGTTTACAAAGAAGATCTGTTGGAGCCACTGTTGCAGACAATATTTGCATTGTCAGGGCCTAAAACTGCAATTTTGCTGGGCTATGAGATTCGTTCTACAAGTGTCCATGAGCAAATGGTTGAAATGTGGAAAAGACACTTCGAGGTGAAACTTGTTCCAAATTCTAAGATGGATAGTACCTACCAACACCCAAGTATTCAACTTTTCATTATGAGATCAAAGCCGCCATCAGGGTATGCAGAAAAAACAGTTGAGCTGATAGATCAAGAAGTTGATGAAGTGGAGACAGCAGACGATAAAGCCAAGGTAATTGATGAGAAAGTTGATGGAAATCCAGTTAAGGTGATCTATCAAAATGCTGTCGAAGTGGGAAGCAGTAAAGAAAAAGGAGAAAATAGCTCTCTTTTAGGAAGTGTTGAAGAAGATTGTGAGCCAGTTACAATACCTCAGAATGGTAAACTTACTGATTGGGAAGCTAGAAGATATGGCTCGATGGCTGCACGTCTTCTGCACGATGTCAAAATCACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

322

Amino Acids

36.11

Weight (kDa)

5.05

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 22 - 183 3e-25 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 662
AclWI GGATC 4 cut(s) 77, 90, 393, 398
AcsI RAATTY 2 cut(s) 154, 598
AfaI GTAC 1 cut(s) 616
AfiI CCNNNNNNNGG 2 cut(s) 668, 890
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 8 cut(s) 19, 93, 209, 296, 309, 560, 638, 857
AhlI ACTAGT 1 cut(s) 127
AjiI CACGTC 1 cut(s) 941
AjnI CCWGG 2 cut(s) 328, 354
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AluBI AGCT 3 cut(s) 694, 837, 914
AluI AGCT 3 cut(s) 694, 837, 914
Alw26I GTCTC 1 cut(s) 716
AlwI GGATC 4 cut(s) 77, 90, 393, 398
AoxI GGCC 1 cut(s) 494
ApeKI GCWGC 1 cut(s) 935
ApoI RAATTY 2 cut(s) 154, 598
AspS9I GGNCC 2 cut(s) 352, 494
AsuHPI GGTGA 2 cut(s) 595, 793
AvaII GGWCC 1 cut(s) 352
BamHI GGATCC 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 935
BbvI GCAGC 1 cut(s) 922
BccI CCATC 5 cut(s) 187, 601, 673, 758, 925
BceAI ACGGC 1 cut(s) 383
BciT130I CCWGG 2 cut(s) 330, 356
BcoDI GTCTC 1 cut(s) 716
BcuI ACTAGT 1 cut(s) 127
BfaI CTAG 3 cut(s) 101, 128, 915
BfmI CTRYAG 1 cut(s) 108
BglII AGATCT 1 cut(s) 451
BisI GCNGC 2 cut(s) 662, 936
BlsI GCNGC 2 cut(s) 663, 937
Bme1390I CCNGG 2 cut(s) 330, 356
Bme18I GGWCC 1 cut(s) 352
BmgBI CACGTC 1 cut(s) 941
BmgT120I GGNCC 2 cut(s) 352, 494
BmiI GGNNCC 3 cut(s) 6, 84, 462
BmrFI CCNGG 2 cut(s) 330, 356
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 3 cut(s) 106, 109, 131
BmuI ACTGGG 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 935
BsaAI YACGTR 1 cut(s) 966
BsaBI GATNNNNATC 1 cut(s) 768
BsaJI CCNNGG 1 cut(s) 741
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bsc4I CCNNNNNNNGG 2 cut(s) 668, 890
Bse1I ACTGG 3 cut(s) 237, 773, 872
Bse3DI GCAATG 1 cut(s) 275
Bse8I GATNNNNATC 1 cut(s) 768
BseBI CCWGG 2 cut(s) 330, 356
BseDI CCNNGG 1 cut(s) 741
BseGI GGATG 2 cut(s) 124, 242
BseJI GATNNNNATC 1 cut(s) 768
BseLI CCNNNNNNNGG 2 cut(s) 668, 890
BseMI GCAATG 1 cut(s) 275
BseMII CTCAG 2 cut(s) 327, 899
BseNI ACTGG 3 cut(s) 237, 773, 872
BseXI GCAGC 1 cut(s) 922
BseYI CCCAGC 2 cut(s) 26, 514
BsgI GTGCAG 2 cut(s) 921, 932
BshFI GGCC 1 cut(s) 496
BslI CCNNNNNNNGG 2 cut(s) 668, 890
BsmAI GTCTC 1 cut(s) 716
BsnI GGCC 1 cut(s) 496
Bsp143I GATC 8 cut(s) 82, 256, 385, 403, 451, 653, 700, 783
BspACI CCGC 1 cut(s) 662
BspANI GGCC 1 cut(s) 496
BspCNI CTCAG 2 cut(s) 328, 898
BspLI GGNNCC 3 cut(s) 6, 84, 462
BspPI GGATC 4 cut(s) 77, 90, 393, 398
BsrDI GCAATG 1 cut(s) 275
BsrI ACTGG 3 cut(s) 237, 773, 872
BssECI CCNNGG 1 cut(s) 741
BssMI GATC 8 cut(s) 82, 256, 385, 403, 451, 653, 700, 783
BssT1I CCWWGG 1 cut(s) 741
Bst2UI CCWGG 2 cut(s) 330, 356
Bst4CI ACNGT 3 cut(s) 112, 468, 688
BstAPI GCANNNNNTGC 1 cut(s) 67
BstBAI YACGTR 1 cut(s) 966
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 3 cut(s) 336, 603, 885
BstF5I GGATG 2 cut(s) 124, 242
BstKTI GATC 8 cut(s) 85, 259, 388, 406, 454, 656, 703, 786
BstMAI GTCTC 1 cut(s) 716
BstMBI GATC 8 cut(s) 82, 256, 385, 403, 451, 653, 700, 783
BstMWI GCNNNNNNNGC 3 cut(s) 67, 224, 469
BstNI CCWGG 2 cut(s) 330, 356
BstSCI CCNGG 2 cut(s) 328, 354
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 922
BstV2I GAAGAC 1 cut(s) 935
BstX2I RGATCY 2 cut(s) 82, 451
BstXI CCANNNNNNTGG 1 cut(s) 145
BstYI RGATCY 2 cut(s) 82, 451
BsuRI GGCC 1 cut(s) 496
BtrI CACGTC 1 cut(s) 941
BtsCI GGATG 2 cut(s) 124, 242
BtsIMutI CAGTG 2 cut(s) 429, 464
Cac8I GCNNGC 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 352, 494
Csp6I GTAC 1 cut(s) 615
CviAII CATG 3 cut(s) 62, 223, 545
CviQI GTAC 1 cut(s) 615
DdeI CTNAG 3 cut(s) 336, 603, 885
DpnI GATC 8 cut(s) 84, 258, 387, 405, 453, 655, 702, 785
DpnII GATC 8 cut(s) 82, 256, 385, 403, 451, 653, 700, 783
Eco130I CCWWGG 1 cut(s) 741
Eco47I GGWCC 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 494
EcoRI GAATTC 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 328, 354
EcoT14I CCWWGG 1 cut(s) 741
EcoT22I ATGCAT 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 741
FaeI CATG 3 cut(s) 65, 226, 548
FatI CATG 3 cut(s) 61, 222, 544
Fnu4HI GCNGC 2 cut(s) 662, 936
FokI GGATG 2 cut(s) 131, 249
Fsp4HI GCNGC 2 cut(s) 662, 936
FspBI CTAG 3 cut(s) 101, 128, 915
GluI GCNGC 2 cut(s) 662, 936
GsaI CCCAGC 2 cut(s) 30, 518
HaeIII GGCC 1 cut(s) 496
Hin1II CATG 3 cut(s) 65, 226, 548
HinfI GANTC 3 cut(s) 325, 338, 526
HphI GGTGA 2 cut(s) 595, 793
Hpy166II GTNNAC 2 cut(s) 442, 896
Hpy188I TCNGA 2 cut(s) 337, 888
Hpy188III TCNNGA 4 cut(s) 80, 146, 159, 704
Hpy8I GTNNAC 2 cut(s) 442, 896
HpyAV CCTTC 1 cut(s) 156
HpyCH4III ACNGT 3 cut(s) 112, 468, 688
HpyCH4IV ACGT 4 cut(s) 199, 435, 940, 965
HpyCH4V TGCA 8 cut(s) 70, 122, 472, 485, 506, 677, 938, 949
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 224, 469
HpyF3I CTNAG 3 cut(s) 336, 603, 885
HpySE526I ACGT 4 cut(s) 199, 435, 940, 965
Hsp92II CATG 3 cut(s) 65, 226, 548
Kzo9I GATC 8 cut(s) 82, 256, 385, 403, 451, 653, 700, 783
LmnI GCTCC 2 cut(s) 215, 460
Lsp1109I GCAGC 1 cut(s) 922
LweI GCATC 3 cut(s) 106, 109, 131
MaeI CTAG 3 cut(s) 101, 128, 915
MaeII ACGT 4 cut(s) 199, 435, 940, 965
MaeIII GTNAC 1 cut(s) 874
MalI GATC 8 cut(s) 84, 258, 387, 405, 453, 655, 702, 785
MboI GATC 8 cut(s) 82, 256, 385, 403, 451, 653, 700, 783
MboII GAAGA 5 cut(s) 461, 869, 872, 930, 935
MflI RGATCY 2 cut(s) 82, 451
MluCI AATT 6 cut(s) 88, 154, 370, 507, 598, 747
MlyI GAGTC 1 cut(s) 347
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 4 cut(s) 259, 376, 574, 894
Mph1103I ATGCAT 1 cut(s) 124
MseI TTAA 3 cut(s) 189, 368, 777
MspR9I CCNGG 2 cut(s) 330, 356
MvaI CCWGG 2 cut(s) 330, 356
MwoI GCNNNNNNNGC 3 cut(s) 67, 224, 469
NdeII GATC 8 cut(s) 82, 256, 385, 403, 451, 653, 700, 783
NlaIII CATG 3 cut(s) 65, 226, 548
NlaIV GGNNCC 3 cut(s) 6, 84, 462
NsiI ATGCAT 1 cut(s) 124
PfeI GAWTC 2 cut(s) 325, 526
PkrI GCNGC 2 cut(s) 663, 937
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
Ppu21I YACGTR 1 cut(s) 966
Psp6I CCWGG 2 cut(s) 328, 354
PspFI CCCAGC 2 cut(s) 26, 514
PspGI CCWGG 2 cut(s) 328, 354
PspN4I GGNNCC 3 cut(s) 6, 84, 462
PspPI GGNCC 2 cut(s) 352, 494
PsuI RGATCY 2 cut(s) 82, 451
RsaI GTAC 1 cut(s) 616
RsaNI GTAC 1 cut(s) 615
SaqAI TTAA 3 cut(s) 189, 368, 777
SatI GCNGC 2 cut(s) 662, 936
Sau3AI GATC 8 cut(s) 82, 256, 385, 403, 451, 653, 700, 783
Sau96I GGNCC 2 cut(s) 352, 494
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 2 cut(s) 330, 356
SfaNI GCATC 3 cut(s) 106, 109, 131
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 352
SpeI ACTAGT 1 cut(s) 127
Sse9I AATT 6 cut(s) 88, 154, 370, 507, 598, 747
SsiI CCGC 1 cut(s) 662
SspI AATATT 1 cut(s) 480
SspMI CTAG 3 cut(s) 101, 128, 915
StyD4I CCNGG 2 cut(s) 328, 354
StyI CCWWGG 1 cut(s) 741
TaaI ACNGT 3 cut(s) 112, 468, 688
TaiI ACGT 4 cut(s) 202, 438, 943, 968
TaqI TCGA 3 cut(s) 579, 801, 929
TaqII GACCGA 1 cut(s) 340
TasI AATT 6 cut(s) 88, 154, 370, 507, 598, 747
TauI GCSGC 1 cut(s) 664
TfiI GAWTC 2 cut(s) 325, 526
Tru1I TTAA 3 cut(s) 189, 368, 777
Tru9I TTAA 3 cut(s) 189, 368, 777
TscAI CASTG 2 cut(s) 436, 471
TseI GCWGC 1 cut(s) 935
TspDTI ATGAA 4 cut(s) 64, 338, 634, 729
TspGWI ACGGA 1 cut(s) 313
TspRI CASTG 2 cut(s) 436, 471
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 2 cut(s) 154, 598
XspI CTAG 3 cut(s) 101, 128, 915
Zsp2I ATGCAT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.