Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003130

Physical Location & Seq

Genomic Coordinates Reverse (-)

7840093 .. 7844503

Gene Structure 4411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G109400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGAGCCTGACAGGTTAAACTCCCCCACTACATTTACCATGAACTTAGAAGTTTTGGGCCATGACTTACAGTTCGCTCAGGATCCAAATTCAAAGCATTTAGGAACTACAGTTTGGGATGCATCACTGGTGTTTGTGAAGTTTCTGGAAAAGAATTGCAGAAAGGGAAGGTTCTCCCCAGCTAAGCTTAAAGGAAAACGTGTCATTGAACTTGGAGCAGGTTGCGGAGTAGCTGGGTTCGGCATGGCATTACTGGGTTGCGATGTGGTTATGACAGATCAAGTGGAGGTTTTGCCATTACTAATGAGAAATGTAGAACGGAATACTTCAAGGATCACACAAATGAATTCTGACTCATTTGGTTCGATCGAGGCAGCGGAGTTGAGCTGGGGAGATAAGGATCATATAAGAGCTGTTGGTCCACCATTTGACTACATTATTGGCACTGATGTTGTGTATAAAGAAAATCTCTTGGAACCACTGTTGCAGACAATGTTTGCATTATCAGGGCCTAAAACTACAATTTTGATTGGGTATGAGATTCGGTCTACAAGTGTCCATGAGCAAATGCTTCAAATGTGGAGAAGAAACTTCGATGTGAAAATTGTTCCAAATTCTAAGATGGACAGTACCTACCAGCATCCAGATATTCAACTTTACATTATGACATTAAAGCCTCCAGAGGGGTATGCAGACAATGCAGTTGAGGTGATTGATGAGAAAGACGATGAAGTGGAGACTGGAGAGGAAGAAGCGGCTAAGGTGATTGATCAGAAAGTTGATGAAGTTGAGACAATTCCAGAAAACACAGTTAAGGTGATCAGTAAGAAAGATGATGAAGTCGAAAGCAGCAAGGAAAAAGGTGAAAACAGTTCTCTTGATGAAGAGGTTGAGGAAGATTGTGAGCCAGGGAGAAGACCTCAGAGTGGTAAACTTACTGATTGGGAAGCTAGAAGATATGGCTCAATGGCTGCAAGGCTTCTGCACGATATCAAAATTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

335

Amino Acids

37.53

Weight (kDa)

4.79

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08125 AT1G08125 AT1G08125 AT1G08125
fragaria_vesca	FvH4_3g30920 FvH4_3g30920 FvH4_3g30920 FvH4_3g30920 FvH4_3g30920 FvH4_3g30920 FvH4_3g30920
malus_domestica	MD11G1146300.v1.1
prunus_persica	Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1
pyrus_communis	pycom11g11930
rosa_chinensis	RchiOBHm_Chr5g0057461
rosa_laevigata	RLG00000035156
rosa_multiflora	Rmu_sc0000508.1_g000013 Rmu_sc0003730.1_g000018 Rmu_sc0003730.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022990
rosa_rugosa	Rorug05G0307400 Rorug05G0307400
rosa_samantha	Rh5AG376000 Rh5BG386800 Rh5CG410300 Rh5DG401100
rosa_wichuraiana	Rw5G035500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	548
AciI	CCGC	3 cut(s)	225, 377, 755
AclWI	GGATC	4 cut(s)	77, 90, 341, 408
AcsI	RAATTY	3 cut(s)	88, 346, 613
AfaI	GTAC	1 cut(s)	631
AfiI	CCNNNNNNNGG	2 cut(s)	683, 926
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	5 cut(s)	93, 209, 330, 575, 653
AjnI	CCWGG	1 cut(s)	907
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AluBI	AGCT	6 cut(s)	182, 187, 233, 387, 413, 950
AluI	AGCT	6 cut(s)	182, 187, 233, 387, 413, 950
Alw26I	GTCTC	2 cut(s)	731, 785
AlwI	GGATC	4 cut(s)	77, 90, 341, 408
AoxI	GGCC	2 cut(s)	58, 509
ApeKI	GCWGC	3 cut(s)	374, 849, 971
ApoI	RAATTY	3 cut(s)	88, 346, 613
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspS9I	GGNCC	3 cut(s)	58, 419, 509
AsuHPI	GGTGA	4 cut(s)	721, 775, 829, 875
AvaII	GGWCC	1 cut(s)	419
BamHI	GGATCC	1 cut(s)	82
BbsI	GAAGAC	1 cut(s)	922
BbvI	GCAGC	3 cut(s)	386, 861, 958
BccI	CCATC	1 cut(s)	616
BciT130I	CCWGG	1 cut(s)	909
BclI	TGATCA	2 cut(s)	769, 819
BcoDI	GTCTC	2 cut(s)	731, 785
BfaI	CTAG	1 cut(s)	951
BfmI	CTRYAG	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	209
BisI	GCNGC	4 cut(s)	375, 756, 850, 972
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	4 cut(s)	376, 757, 851, 973
Bme1390I	CCNGG	1 cut(s)	909
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	3 cut(s)	58, 419, 509
BmiI	GGNNCC	3 cut(s)	6, 84, 477
BmrFI	CCNGG	1 cut(s)	909
BmrI	ACTGGG	1 cut(s)	263
BmsI	GCATC	3 cut(s)	109, 131, 649
BmuI	ACTGGG	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	922
BplI	GAGNNNNNCTC	2 cut(s)	904, 936
BpmI	CTGGAG	2 cut(s)	663, 762
Bpu10I	CCTNAGC	2 cut(s)	78, 759
Bpu1102I	GCTNAGC	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	908
Bsc4I	CCNNNNNNNGG	2 cut(s)	683, 926
Bse1I	ACTGG	3 cut(s)	132, 258, 745
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	909
BseDI	CCNNGG	1 cut(s)	908
BseGI	GGATG	2 cut(s)	124, 640
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	683, 926
BseMII	CTCAG	2 cut(s)	92, 935
BseNI	ACTGG	3 cut(s)	132, 258, 745
BseXI	GCAGC	3 cut(s)	386, 861, 958
BseYI	CCCAGC	3 cut(s)	178, 233, 387
BsgI	GTGCAG	1 cut(s)	968
Bsh1285I	CGRYCG	1 cut(s)	369
BshFI	GGCC	2 cut(s)	60, 511
BsiEI	CGRYCG	1 cut(s)	369
BslI	CCNNNNNNNGG	2 cut(s)	683, 926
BsmAI	GTCTC	2 cut(s)	731, 785
BsnI	GGCC	2 cut(s)	60, 511
Bsp143I	GATC	7 cut(s)	82, 277, 333, 366, 400, 769, 819
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	3 cut(s)	225, 377, 755
BspANI	GGCC	2 cut(s)	60, 511
BspCNI	CTCAG	2 cut(s)	91, 934
BspLI	GGNNCC	3 cut(s)	6, 84, 477
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	4 cut(s)	77, 90, 341, 408
BsrI	ACTGG	3 cut(s)	132, 258, 745
BssECI	CCNNGG	1 cut(s)	908
BssMI	GATC	7 cut(s)	82, 277, 333, 366, 400, 769, 819
Bst2UI	CCWGG	1 cut(s)	909
Bst4CI	ACNGT	6 cut(s)	72, 112, 483, 629, 811, 872
Bst6I	CTCTTC	1 cut(s)	879
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstDEI	CTNAG	7 cut(s)	46, 78, 183, 618, 759, 921, 1002
BstF5I	GGATG	2 cut(s)	124, 640
BstKTI	GATC	7 cut(s)	85, 280, 336, 369, 403, 772, 822
BstMAI	GTCTC	2 cut(s)	731, 785
BstMBI	GATC	7 cut(s)	82, 277, 333, 366, 400, 769, 819
BstMCI	CGRYCG	1 cut(s)	369
BstMWI	GCNNNNNNNGC	1 cut(s)	698
BstNI	CCWGG	1 cut(s)	909
BstSCI	CCNGG	1 cut(s)	907
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	3 cut(s)	386, 861, 958
BstV2I	GAAGAC	1 cut(s)	922
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	60, 511
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	124, 640
BtsIMutI	CAGTG	3 cut(s)	125, 444, 479
BveI	ACCTGC	1 cut(s)	209
Cfr13I	GGNCC	3 cut(s)	58, 419, 509
Csp6I	GTAC	1 cut(s)	630
CviAII	CATG	4 cut(s)	40, 62, 244, 560
CviQI	GTAC	1 cut(s)	630
DdeI	CTNAG	7 cut(s)	46, 78, 183, 618, 759, 921, 1002
DpnI	GATC	7 cut(s)	84, 279, 335, 368, 402, 771, 821
DpnII	GATC	7 cut(s)	82, 277, 333, 366, 400, 769, 819
Eam1104I	CTCTTC	1 cut(s)	879
EarI	CTCTTC	1 cut(s)	879
Eco32I	GATATC	1 cut(s)	991
Eco47I	GGWCC	1 cut(s)	419
EcoO109I	RGGNCCY	1 cut(s)	509
EcoRI	GAATTC	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	907
EcoRV	GATATC	1 cut(s)	991
EcoT22I	ATGCAT	1 cut(s)	124
FaeI	CATG	4 cut(s)	43, 65, 247, 563
FatI	CATG	4 cut(s)	39, 61, 243, 559
FbaI	TGATCA	2 cut(s)	769, 819
FblI	GTMKAC	1 cut(s)	548
Fnu4HI	GCNGC	4 cut(s)	375, 756, 850, 972
FokI	GGATG	2 cut(s)	131, 627
Fsp4HI	GCNGC	4 cut(s)	375, 756, 850, 972
FspBI	CTAG	1 cut(s)	951
GluI	GCNGC	4 cut(s)	375, 756, 850, 972
GsaI	CCCAGC	3 cut(s)	182, 237, 391
GsuI	CTGGAG	2 cut(s)	663, 762
HaeIII	GGCC	2 cut(s)	60, 511
Hin1II	CATG	4 cut(s)	43, 65, 247, 563
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	2 cut(s)	353, 541
HphI	GGTGA	4 cut(s)	721, 775, 829, 875
Hpy166II	GTNNAC	3 cut(s)	422, 549, 932
Hpy188I	TCNGA	3 cut(s)	352, 774, 924
Hpy188III	TCNNGA	6 cut(s)	80, 146, 644, 680, 800, 878
Hpy8I	GTNNAC	3 cut(s)	422, 549, 932
HpyAV	CCTTC	1 cut(s)	162
HpyCH4III	ACNGT	6 cut(s)	72, 112, 483, 629, 811, 872
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	8 cut(s)	122, 159, 487, 500, 692, 701, 974, 985
HpyF10VI	GCNNNNNNNGC	1 cut(s)	698
HpyF3I	CTNAG	7 cut(s)	46, 78, 183, 618, 759, 921, 1002
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	4 cut(s)	43, 65, 247, 563
Ksp22I	TGATCA	2 cut(s)	769, 819
Kzo9I	GATC	7 cut(s)	82, 277, 333, 366, 400, 769, 819
LmnI	GCTCC	2 cut(s)	4, 215
Lsp1109I	GCAGC	3 cut(s)	386, 861, 958
LweI	GCATC	3 cut(s)	109, 131, 649
MaeI	CTAG	1 cut(s)	951
MaeII	ACGT	1 cut(s)	199
MalI	GATC	7 cut(s)	84, 279, 335, 368, 402, 771, 821
MboI	GATC	7 cut(s)	82, 277, 333, 366, 400, 769, 819
MboII	GAAGA	6 cut(s)	597, 761, 896, 908, 927, 966
MflI	RGATCY	1 cut(s)	82
MluCI	AATT	8 cut(s)	88, 154, 346, 522, 603, 613, 795, 996
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	9 cut(s)	280, 364, 676, 687, 700, 739, 880, 886, 930
Mph1103I	ATGCAT	1 cut(s)	124
MseI	TTAA	4 cut(s)	17, 189, 671, 813
MslI	CAYNNNNRTG	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	909
MvaI	CCWGG	1 cut(s)	909
MwoI	GCNNNNNNNGC	1 cut(s)	698
NdeII	GATC	7 cut(s)	82, 277, 333, 366, 400, 769, 819
NlaIII	CATG	4 cut(s)	43, 65, 247, 563
NlaIV	GGNNCC	3 cut(s)	6, 84, 477
NsiI	ATGCAT	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	541
PkrI	GCNGC	4 cut(s)	376, 757, 851, 973
Ple19I	CGATCG	1 cut(s)	369
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	907
PspFI	CCCAGC	3 cut(s)	178, 233, 387
PspGI	CCWGG	1 cut(s)	907
PspN4I	GGNNCC	3 cut(s)	6, 84, 477
PspPI	GGNCC	3 cut(s)	58, 419, 509
PsuI	RGATCY	1 cut(s)	82
PvuI	CGATCG	1 cut(s)	369
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	4 cut(s)	17, 189, 671, 813
SatI	GCNGC	4 cut(s)	375, 756, 850, 972
Sau3AI	GATC	7 cut(s)	82, 277, 333, 366, 400, 769, 819
Sau96I	GGNCC	3 cut(s)	58, 419, 509
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	909
SfaNI	GCATC	3 cut(s)	109, 131, 649
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	341
Sse9I	AATT	8 cut(s)	88, 154, 346, 522, 603, 613, 795, 996
SsiI	CCGC	3 cut(s)	225, 377, 755
SspMI	CTAG	1 cut(s)	951
StyD4I	CCNGG	1 cut(s)	907
TaaI	ACNGT	6 cut(s)	72, 112, 483, 629, 811, 872
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	4 cut(s)	365, 369, 594, 843
TaqII	GACCGA	1 cut(s)	534
TasI	AATT	8 cut(s)	88, 154, 346, 522, 603, 613, 795, 996
TauI	GCSGC	1 cut(s)	758
TfiI	GAWTC	1 cut(s)	541
Tru1I	TTAA	4 cut(s)	17, 189, 671, 813
Tru9I	TTAA	4 cut(s)	17, 189, 671, 813
TscAI	CASTG	3 cut(s)	132, 451, 486
TseI	GCWGC	3 cut(s)	374, 849, 971
TspDTI	ATGAA	6 cut(s)	56, 359, 744, 798, 852, 897
TspGWI	ACGGA	1 cut(s)	334
TspRI	CASTG	3 cut(s)	132, 451, 486
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	3 cut(s)	88, 346, 613
XmiI	GTMKAC	1 cut(s)	548
XspI	CTAG	1 cut(s)	951
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.