Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000508.1

Orthogroup ID

OG0003130

Physical Location & Seq

Genomic Coordinates Reverse (-)

74631 .. 76936

Gene Structure 2306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000508.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgttctttgtagagtcatttggttcggtccaggtagcagagttaaattggggaaatgaggatcatataagagccgttgatccgccatttgactacatcattggcactgacattgtttacaaagaagatctcttggagccactgttgcagacaatatttgcattgtcagggcctaaaactgcaattttgctgggctatgagattcgttctacaagtgtccatgagcaaatggttgaaatgtggaaaagacacttcgaggtgaaacttgttccaaattctaagatggatagtacctaccaacacccaagtattcaacttttcattatgagatcaaaaccgccatcagggtatgcagaaaaaacagttgagcagatagatcaagaagttgatgaagtggagacagcagacaataaagccaacgtaattgatgagaaagttgatggaaatccagttaaggtgatttatcaaaatgctgtcgaagtgggaagcagtaaagaaaaaggagaaaatagctctcttttaggaagtgtggaagaagattgtgagccagttacaatacctcagaatggtaaacttactgaatgggaagctagaagatatggctcgatggctgcacgtcttctgcacgatgtcaaaatcacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

214

Amino Acids

24.16

Weight (kDa)

4.73

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08125 AT1G08125 AT1G08125 AT1G08125
fragaria_vesca	FvH4_3g30920 FvH4_3g30920 FvH4_3g30920 FvH4_3g30920 FvH4_3g30920 FvH4_3g30920 FvH4_3g30920
malus_domestica	MD11G1146300.v1.1
prunus_persica	Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1 Prupe.6G109400_v2.0.a1
pyrus_communis	pycom11g11930
rosa_chinensis	RchiOBHm_Chr5g0057461
rosa_laevigata	RLG00000035156
rosa_multiflora	Rmu_sc0000508.1_g000013 Rmu_sc0003730.1_g000018 Rmu_sc0003730.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022990
rosa_rugosa	Rorug05G0307400 Rorug05G0307400
rosa_samantha	Rh5AG376000 Rh5BG386800 Rh5CG410300 Rh5DG401100
rosa_wichuraiana	Rw5G035500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	83, 338
AclWI	GGATC	2 cut(s)	69, 74
AcsI	RAATTY	1 cut(s)	274
AfaI	GTAC	1 cut(s)	292
AfiI	CCNNNNNNNGG	2 cut(s)	344, 566
AgsI	TTSAA	2 cut(s)	236, 314
AjiI	CACGTC	1 cut(s)	617
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	2 cut(s)	513, 590
AluI	AGCT	2 cut(s)	513, 590
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	2 cut(s)	69, 74
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	611
ApoI	RAATTY	1 cut(s)	274
AspS9I	GGNCC	2 cut(s)	28, 170
AsuHPI	GGTGA	2 cut(s)	271, 469
AvaII	GGWCC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	611
BbvI	GCAGC	1 cut(s)	598
BccI	CCATC	4 cut(s)	277, 349, 434, 601
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	392
BfaI	CTAG	1 cut(s)	591
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	1 cut(s)	612
BlsI	GCNGC	1 cut(s)	613
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	28
BmgBI	CACGTC	1 cut(s)	617
BmgT120I	GGNCC	2 cut(s)	28, 170
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	611
BsaBI	GATNNNNATC	1 cut(s)	444
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	2 cut(s)	344, 566
Bse1I	ACTGG	2 cut(s)	449, 548
Bse8I	GATNNNNATC	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	32
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	344, 566
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	2 cut(s)	449, 548
BseXI	GCAGC	1 cut(s)	598
BseYI	CCCAGC	1 cut(s)	190
BsgI	GTGCAG	2 cut(s)	597, 608
BshFI	GGCC	1 cut(s)	172
BslI	CCNNNNNNNGG	2 cut(s)	344, 566
BsmAI	GTCTC	1 cut(s)	392
BsnI	GGCC	1 cut(s)	172
Bsp143I	GATC	5 cut(s)	61, 79, 127, 329, 376
BspACI	CCGC	2 cut(s)	83, 338
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	574
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	2 cut(s)	69, 74
BsrI	ACTGG	2 cut(s)	449, 548
BssMI	GATC	5 cut(s)	61, 79, 127, 329, 376
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	144, 364
BstDEI	CTNAG	2 cut(s)	279, 561
BstKTI	GATC	5 cut(s)	64, 82, 130, 332, 379
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	5 cut(s)	61, 79, 127, 329, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	598
BstV2I	GAAGAC	1 cut(s)	611
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	172
BtrI	CACGTC	1 cut(s)	617
BtsIMutI	CAGTG	2 cut(s)	105, 140
Cfr13I	GGNCC	2 cut(s)	28, 170
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	1 cut(s)	221
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	2 cut(s)	279, 561
DpnI	GATC	5 cut(s)	63, 81, 129, 331, 378
DpnII	GATC	5 cut(s)	61, 79, 127, 329, 376
EciI	GGCGGA	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	30
FaeI	CATG	1 cut(s)	224
FaiI	YATR	8 cut(s)	66, 68, 198, 222, 326, 351, 600, 643
FatI	CATG	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	612
Fsp4HI	GCNGC	1 cut(s)	612
FspBI	CTAG	1 cut(s)	591
GluI	GCNGC	1 cut(s)	612
GsaI	CCCAGC	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	172
Hin1II	CATG	1 cut(s)	224
HinfI	GANTC	2 cut(s)	14, 202
HphI	GGTGA	2 cut(s)	271, 469
Hpy166II	GTNNAC	2 cut(s)	118, 572
Hpy188I	TCNGA	1 cut(s)	564
Hpy188III	TCNNGA	1 cut(s)	380
Hpy8I	GTNNAC	2 cut(s)	118, 572
HpyCH4III	ACNGT	2 cut(s)	144, 364
HpyCH4IV	ACGT	2 cut(s)	420, 616
HpyCH4V	TGCA	6 cut(s)	148, 161, 182, 353, 614, 625
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	2 cut(s)	279, 561
HpySE526I	ACGT	2 cut(s)	420, 616
Hsp92II	CATG	1 cut(s)	224
Kzo9I	GATC	5 cut(s)	61, 79, 127, 329, 376
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	7 cut(s)	17, 44, 153, 176, 330, 462, 561
Lsp1109I	GCAGC	1 cut(s)	598
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	2 cut(s)	420, 616
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	5 cut(s)	63, 81, 129, 331, 378
MboI	GATC	5 cut(s)	61, 79, 127, 329, 376
MboII	GAAGA	5 cut(s)	137, 545, 548, 606, 611
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	4 cut(s)	46, 183, 274, 423
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	3 cut(s)	52, 250, 570
MseI	TTAA	2 cut(s)	44, 453
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	145
NdeII	GATC	5 cut(s)	61, 79, 127, 329, 376
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	613
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	2 cut(s)	28, 170
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	44, 453
SatI	GCNGC	1 cut(s)	612
Sau3AI	GATC	5 cut(s)	61, 79, 127, 329, 376
Sau96I	GGNCC	2 cut(s)	28, 170
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	32
SetI	ASST	9 cut(s)	36, 261, 296, 423, 459, 515, 562, 592, 619
SinI	GGWCC	1 cut(s)	28
Sse9I	AATT	4 cut(s)	46, 183, 274, 423
SsiI	CCGC	2 cut(s)	83, 338
SspI	AATATT	1 cut(s)	156
SspMI	CTAG	1 cut(s)	591
StyD4I	CCNGG	1 cut(s)	30
TaaI	ACNGT	2 cut(s)	144, 364
TaiI	ACGT	2 cut(s)	423, 619
TaqI	TCGA	3 cut(s)	255, 477, 605
TaqII	GACCGA	1 cut(s)	16
TasI	AATT	4 cut(s)	46, 183, 274, 423
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	2 cut(s)	44, 453
Tru9I	TTAA	2 cut(s)	44, 453
TscAI	CASTG	2 cut(s)	112, 147
TseI	GCWGC	1 cut(s)	611
TspDTI	ATGAA	2 cut(s)	310, 405
TspRI	CASTG	2 cut(s)	112, 147
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	1 cut(s)	274
XspI	CTAG	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.