FvH4_3g31640

BEL1-like homeodomain protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
26053865 .. 26061248
7384 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31640.t16

Sequence Viewer

Length: 1404 bp
ATGGAGATGAGTGGCTTTAGGCCTAGTGAATCCAACCATGTAGCTCAGCAAAGCCGTCGTGACAAGTTGCGAGTTCAGCATACTTCAAACCTATCCCATCCTCAGTCAGATCTACCGAACAATTCACCAGCCCAACAAAACCCAGATATTGTTCAAGTTCGAAATGTCAGAAATGCCAATAATCTGCTTTTTGATCCGAGCCTCTTCTCCCCAGAACTTCTCAATTTTTCGATAAATGCAAATCATGCATTTGCATCATCAACTCAAGATTTAGGTGACGAGAGTCCTCAAAATTATGGTAATTGGAGAAGTCTAAACCCACACCAAAACTTAGATAATTGGGATACCAATTACCCAACCGGTACTACTTCAAACCACCATATGTATGTCAGGGAAGTTAATAACACATCTCCATCCACACCATCACATTTGAAGCCTAGTATTTACCATGGTTACCAGCATTTTTCTTCTCCATCTCCAATTTACCATAGTACACTCCAAGATGTTGTTACACCAGCTTCTGCCGGAGGGATCCAGCAGGATCAGCTAGAAATGGCTTCTTGGGCACAAGGCTATGTAAATCAATCCCCTACATTGGGATTCGATAACTCAAGTCCTTGGATGGATCGACCGATAGGGAGTAATCGCCATAACTGGACTGGGGGCGAAGAATTGAGATGTGCTATGAGTGATTATTCCAACCAACAAGGCCTGTCTCTATCACTTTCTTCAAATCCTCCTCCATCACAAGGATTGCAAGCAAGTTCAAGTAGGAAATCGGGCGGTTACTTATGTTCGATGATGAAGCCATCAGTTATAAGCAAAGCATGTGGAACTACCAAGTCACTTCAAGAGTTAGTTGCGACTAGTACTGCTTCTACCAGTAGTGCTGCATATCATAGAAGCACAGGTCCTCTTGGTCCTTTCACCGGATATGCGACGATTTTGAAGAGTTCCAAGTTCTTGAAACCAGCACAACAGCTGTTGGAAGAGTTTTGTAGAGTAAATGATCATTCAAAGGCATTCAAAACACGCGAGGCATCTGAGAGGATATCTAAGGATCAGGCTAGTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCCGTTTCAGTCTCTAATGATCAAGCTGCTAATATGACTCAAAATTCAGTAGTTGCAAATAAGGGGAGAAATAATTCTGCTGCATCATCCTCTGCATTTTACGGTTCGAATGAAATTAGCAGTGATGGTGGAGCTGCTGCAAGCACATCTTCTGGGTCGTTTCAGCCGGAGTACCAACAGAAAAAGGCAAAGCTCCTATACATGCAGGAGGAGGTTAGTACTAAATTTTTGTCTCTCCATTCTAATTATTGTCTTATTCTTATGAATTTTGAGCTGAGAGTACCAAATAGATCTGTTGGTAATTAA

Protein Analysis

468

Amino Acids

50.8

Weight (kDa)

7.73

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POX PF07526 338 - 510 3e-36 Associated with HOX
Homeobox_KN PF05920 592 - 631 2.6e-19 Homeobox KN domain
Homeodomain PF00046 599 - 631 3.1e-06 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 818
AccII CGCG 1 cut(s) 1035
AciI CCGC 1 cut(s) 783
AclWI GGATC 6 cut(s) 188, 526, 539, 549, 633, 1068
AcsI RAATTY 3 cut(s) 1141, 1322, 1363
AfaI GTAC 6 cut(s) 364, 493, 871, 1271, 1318, 1380
AfiI CCNNNNNNNGG 4 cut(s) 595, 596, 749, 929
AgeI ACCGGT 1 cut(s) 359
AhlI ACTAGT 1 cut(s) 866
AluBI AGCT 8 cut(s) 44, 518, 547, 982, 1124, 1232, 1291, 1372
AluI AGCT 8 cut(s) 44, 518, 547, 982, 1124, 1232, 1291, 1372
Alw26I GTCTC 3 cut(s) 720, 1114, 1335
AlwI GGATC 6 cut(s) 188, 526, 539, 549, 633, 1068
AlwNI CAGNNNCTG 1 cut(s) 521
AoxI GGCC 2 cut(s) 20, 709
ApeKI GCWGC 5 cut(s) 890, 1124, 1178, 1232, 1235
ApoI RAATTY 3 cut(s) 1141, 1322, 1363
AsiGI ACCGGT 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 1171
AspS9I GGNCC 2 cut(s) 911, 920
AsuHPI GGTGA 3 cut(s) 117, 287, 919
AsuII TTCGAA 2 cut(s) 160, 1205
AvaII GGWCC 2 cut(s) 911, 920
BaeGI GKGCMC 1 cut(s) 568
BamHI GGATCC 1 cut(s) 531
BbvI GCAGC 5 cut(s) 877, 1111, 1165, 1219, 1222
BccI CCATC 8 cut(s) 105, 421, 430, 481, 616, 751, 817, 1217
BceAI ACGGC 1 cut(s) 39
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BciVI GTATCC 1 cut(s) 337
BclI TGATCA 2 cut(s) 1009, 1117
BcoDI GTCTC 3 cut(s) 720, 1114, 1335
BcuI ACTAGT 1 cut(s) 866
BfaI CTAG 5 cut(s) 24, 438, 548, 867, 1068
BfuI GTATCC 1 cut(s) 337
BglII AGATCT 2 cut(s) 109, 1388
BisI GCNGC 5 cut(s) 891, 1125, 1179, 1233, 1236
BlpI GCTNAGC 1 cut(s) 45
BlsI GCNGC 5 cut(s) 892, 1126, 1180, 1234, 1237
BmcAI AGTACT 2 cut(s) 871, 1318
Bme18I GGWCC 2 cut(s) 911, 920
BmgT120I GGNCC 2 cut(s) 911, 920
BmiI GGNNCC 1 cut(s) 533
BmrI ACTGGG 1 cut(s) 669
BmsI GCATC 3 cut(s) 263, 1049, 1190
BmuI ACTGGG 1 cut(s) 669
BoxI GACNNNNGTC 1 cut(s) 282
Bpu1102I GCTNAGC 1 cut(s) 45
Bpu14I TTCGAA 2 cut(s) 160, 1205
BpuEI CTTGAG 2 cut(s) 249, 595
BsaJI CCNNGG 2 cut(s) 448, 617
BsaWI WCCGGW 2 cut(s) 359, 929
Bsc4I CCNNNNNNNGG 4 cut(s) 595, 596, 749, 929
Bse118I RCCGGY 1 cut(s) 359
Bse1I ACTGG 3 cut(s) 659, 664, 882
BseDI CCNNGG 2 cut(s) 448, 617
BseGI GGATG 4 cut(s) 97, 413, 627, 1184
BseLI CCNNNNNNNGG 4 cut(s) 595, 596, 749, 929
BseMII CTCAG 4 cut(s) 59, 116, 1035, 1364
BseNI ACTGG 3 cut(s) 659, 664, 882
BseRI GAGGAG 2 cut(s) 729, 1322
BseSI GKGCMC 1 cut(s) 568
BseXI GCAGC 5 cut(s) 877, 1111, 1165, 1219, 1222
Bsh1236I CGCG 1 cut(s) 1035
Bsh1285I CGRYCG 1 cut(s) 632
BshFI GGCC 2 cut(s) 22, 711
BshTI ACCGGT 1 cut(s) 359
BsiEI CGRYCG 1 cut(s) 632
BsiSI CCGG 4 cut(s) 360, 525, 930, 1265
BslI CCNNNNNNNGG 4 cut(s) 595, 596, 749, 929
BsmAI GTCTC 3 cut(s) 720, 1114, 1335
BsmI GAATGC 1 cut(s) 1022
BsnI GGCC 2 cut(s) 22, 711
Bsp119I TTCGAA 2 cut(s) 160, 1205
Bsp1286I GDGCHC 1 cut(s) 568
Bsp143I GATC 9 cut(s) 109, 193, 531, 541, 625, 1009, 1060, 1117, 1388
Bsp1720I GCTNAGC 1 cut(s) 45
Bsp19I CCATGG 1 cut(s) 448
BspACI CCGC 1 cut(s) 783
BspANI GGCC 2 cut(s) 22, 711
BspCNI CTCAG 4 cut(s) 58, 115, 1036, 1365
BspFNI CGCG 1 cut(s) 1035
BspLI GGNNCC 1 cut(s) 533
BspPI GGATC 6 cut(s) 188, 526, 539, 549, 633, 1068
BspT104I TTCGAA 2 cut(s) 160, 1205
BsrFI RCCGGY 1 cut(s) 359
BsrI ACTGG 3 cut(s) 659, 664, 882
BssAI RCCGGY 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 448, 617
BssMI GATC 9 cut(s) 109, 193, 531, 541, 625, 1009, 1060, 1117, 1388
BssT1I CCWWGG 2 cut(s) 448, 617
Bst4CI ACNGT 1 cut(s) 1202
Bst6I CTCTTC 3 cut(s) 209, 944, 984
BstAPI GCANNNNNTGC 1 cut(s) 245
BstBI TTCGAA 2 cut(s) 160, 1205
BstC8I GCNNGC 2 cut(s) 759, 1240
BstDEI CTNAG 6 cut(s) 45, 102, 331, 1044, 1056, 1373
BstDSI CCRYGG 1 cut(s) 448
BstEII GGTNACC 1 cut(s) 452
BstF5I GGATG 4 cut(s) 97, 413, 627, 1184
BstFNI CGCG 1 cut(s) 1035
BstKTI GATC 9 cut(s) 112, 196, 534, 544, 628, 1012, 1063, 1120, 1391
BstMAI GTCTC 3 cut(s) 720, 1114, 1335
BstMBI GATC 9 cut(s) 109, 193, 531, 541, 625, 1009, 1060, 1117, 1388
BstMCI CGRYCG 1 cut(s) 632
BstMWI GCNNNNNNNGC 4 cut(s) 76, 245, 544, 563
BstNSI RCATGY 2 cut(s) 831, 1303
BstPAI GACNNNNGTC 1 cut(s) 282
BstPI GGTNACC 1 cut(s) 452
BstSLI GKGCMC 1 cut(s) 568
BstUI CGCG 1 cut(s) 1035
BstV1I GCAGC 5 cut(s) 877, 1111, 1165, 1219, 1222
BstX2I RGATCY 3 cut(s) 109, 531, 1388
BstYI RGATCY 3 cut(s) 109, 531, 1388
BsuI GTATCC 1 cut(s) 337
BsuRI GGCC 2 cut(s) 22, 711
BtgI CCRYGG 1 cut(s) 448
BtsCI GGATG 4 cut(s) 97, 413, 627, 1184
BtsI GCAGTG 1 cut(s) 1225
BtsIMutI CAGTG 1 cut(s) 1225
Cac8I GCNNGC 2 cut(s) 759, 1240
CaiI CAGNNNCTG 1 cut(s) 521
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 2 cut(s) 911, 920
Csp6I GTAC 6 cut(s) 363, 492, 870, 1270, 1317, 1379
CspAI ACCGGT 1 cut(s) 359
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 5 cut(s) 38, 245, 449, 828, 1300
CviQI GTAC 6 cut(s) 363, 492, 870, 1270, 1317, 1379
DdeI CTNAG 6 cut(s) 45, 102, 331, 1044, 1056, 1373
DpnI GATC 9 cut(s) 111, 195, 533, 543, 627, 1011, 1062, 1119, 1390
DpnII GATC 9 cut(s) 109, 193, 531, 541, 625, 1009, 1060, 1117, 1388
Eam1104I CTCTTC 3 cut(s) 209, 944, 984
EarI CTCTTC 3 cut(s) 209, 944, 984
Eco130I CCWWGG 2 cut(s) 448, 617
Eco147I AGGCCT 2 cut(s) 22, 711
Eco32I GATATC 1 cut(s) 1053
Eco47I GGWCC 2 cut(s) 911, 920
Eco91I GGTNACC 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 911
EcoO65I GGTNACC 1 cut(s) 452
EcoRV GATATC 1 cut(s) 1053
EcoT14I CCWWGG 2 cut(s) 448, 617
EcoT22I ATGCAT 1 cut(s) 250
ErhI CCWWGG 2 cut(s) 448, 617
FaeI CATG 5 cut(s) 41, 248, 452, 831, 1303
FalI AAGNNNNNCTT 2 cut(s) 1231, 1263
FatI CATG 5 cut(s) 37, 244, 448, 827, 1299
FauNDI CATATG 1 cut(s) 381
FbaI TGATCA 2 cut(s) 1009, 1117
Fnu4HI GCNGC 5 cut(s) 891, 1125, 1179, 1233, 1236
FokI GGATG 4 cut(s) 84, 400, 634, 1171
Fsp4HI GCNGC 5 cut(s) 891, 1125, 1179, 1233, 1236
FspBI CTAG 5 cut(s) 24, 438, 548, 867, 1068
GluI GCNGC 5 cut(s) 891, 1125, 1179, 1233, 1236
HaeIII GGCC 2 cut(s) 22, 711
HapII CCGG 4 cut(s) 360, 525, 930, 1265
Hin1II CATG 5 cut(s) 41, 248, 452, 831, 1303
HinfI GANTC 4 cut(s) 29, 283, 600, 1135
HpaII CCGG 4 cut(s) 360, 525, 930, 1265
HphI GGTGA 3 cut(s) 117, 287, 919
Hpy166II GTNNAC 1 cut(s) 494
Hpy188I TCNGA 4 cut(s) 109, 170, 198, 1045
Hpy188III TCNNGA 4 cut(s) 59, 266, 851, 964
Hpy8I GTNNAC 1 cut(s) 494
Hpy99I CGWCG 2 cut(s) 60, 943
HpyCH4III ACNGT 1 cut(s) 1202
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 245, 544, 563
HpyF3I CTNAG 6 cut(s) 45, 102, 331, 1044, 1056, 1373
Hsp92II CATG 5 cut(s) 41, 248, 452, 831, 1303
Ksp22I TGATCA 2 cut(s) 1009, 1117
Kzo9I GATC 9 cut(s) 109, 193, 531, 541, 625, 1009, 1060, 1117, 1388
LmnI GCTCC 2 cut(s) 1229, 1296
Lsp1109I GCAGC 5 cut(s) 877, 1111, 1165, 1219, 1222
LweI GCATC 3 cut(s) 263, 1049, 1190
MaeI CTAG 5 cut(s) 24, 438, 548, 867, 1068
MaeIII GTNAC 6 cut(s) 59, 275, 452, 508, 785, 843
MalI GATC 9 cut(s) 111, 195, 533, 543, 627, 1011, 1062, 1119, 1390
MboI GATC 9 cut(s) 109, 193, 531, 541, 625, 1009, 1060, 1117, 1388
MboII GAAGA 7 cut(s) 196, 459, 680, 720, 961, 1001, 1239
MflI RGATCY 3 cut(s) 109, 531, 1388
MhlI GDGCHC 1 cut(s) 568
MlyI GAGTC 2 cut(s) 292, 1129
MmeI TCCRAC 3 cut(s) 57, 723, 966
Mph1103I ATGCAT 1 cut(s) 250
MroXI GAANNNNTTC 1 cut(s) 1171
MseI TTAA 2 cut(s) 399, 1402
MslI CAYNNNNRTG 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 982
MspI CCGG 4 cut(s) 360, 525, 930, 1265
Mva1269I GAATGC 1 cut(s) 1022
MvnI CGCG 1 cut(s) 1035
MwoI GCNNNNNNNGC 4 cut(s) 76, 245, 544, 563
NcoI CCATGG 1 cut(s) 448
NdeI CATATG 1 cut(s) 381
NdeII GATC 9 cut(s) 109, 193, 531, 541, 625, 1009, 1060, 1117, 1388
NlaIII CATG 5 cut(s) 41, 248, 452, 831, 1303
NlaIV GGNNCC 1 cut(s) 533
NmuCI GTSAC 3 cut(s) 59, 275, 843
NsiI ATGCAT 1 cut(s) 250
NspI RCATGY 2 cut(s) 831, 1303
NspV TTCGAA 2 cut(s) 160, 1205
PceI AGGCCT 2 cut(s) 22, 711
PctI GAATGC 1 cut(s) 1022
PdmI GAANNNNTTC 1 cut(s) 1171
PfeI GAWTC 2 cut(s) 29, 600
PinAI ACCGGT 1 cut(s) 359
PkrI GCNGC 5 cut(s) 892, 1126, 1180, 1234, 1237
PleI GAGTC 2 cut(s) 291, 1129
PpsI GAGTC 2 cut(s) 291, 1129
PpuMI RGGWCCY 1 cut(s) 911
PshAI GACNNNNGTC 1 cut(s) 282
PsiI TTATAA 1 cut(s) 818
Psp5II RGGWCCY 1 cut(s) 911
PspEI GGTNACC 1 cut(s) 452
PspN4I GGNNCC 1 cut(s) 533
PspPI GGNCC 2 cut(s) 911, 920
PspPPI RGGWCCY 1 cut(s) 911
PstNI CAGNNNCTG 1 cut(s) 521
PsuI RGATCY 3 cut(s) 109, 531, 1388
PvuII CAGCTG 1 cut(s) 982
RsaI GTAC 6 cut(s) 364, 493, 871, 1271, 1318, 1380
RsaNI GTAC 6 cut(s) 363, 492, 870, 1270, 1317, 1379
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 2 cut(s) 399, 1402
SatI GCNGC 5 cut(s) 891, 1125, 1179, 1233, 1236
Sau3AI GATC 9 cut(s) 109, 193, 531, 541, 625, 1009, 1060, 1117, 1388
Sau96I GGNCC 2 cut(s) 911, 920
ScaI AGTACT 2 cut(s) 871, 1318
SchI GAGTC 2 cut(s) 292, 1129
SduI GDGCHC 1 cut(s) 568
SfaNI GCATC 3 cut(s) 263, 1049, 1190
SfuI TTCGAA 2 cut(s) 160, 1205
SinI GGWCC 2 cut(s) 911, 920
SmiMI CAYNNNNRTG 1 cut(s) 384
SmlI CTYRAG 2 cut(s) 264, 610
SmoI CTYRAG 2 cut(s) 264, 610
SpeI ACTAGT 1 cut(s) 866
SseBI AGGCCT 2 cut(s) 22, 711
SsiI CCGC 1 cut(s) 783
SspMI CTAG 5 cut(s) 24, 438, 548, 867, 1068
StuI AGGCCT 2 cut(s) 22, 711
StyI CCWWGG 2 cut(s) 448, 617
TaaI ACNGT 1 cut(s) 1202
TaqI TCGA 6 cut(s) 160, 230, 603, 628, 797, 1205
TaqII GACCGA 1 cut(s) 646
TatI WGTACW 3 cut(s) 491, 869, 1316
TfiI GAWTC 2 cut(s) 29, 600
Tru1I TTAA 2 cut(s) 399, 1402
Tru9I TTAA 2 cut(s) 399, 1402
TscAI CASTG 1 cut(s) 1225
TseFI GTSAC 3 cut(s) 59, 275, 843
TseI GCWGC 5 cut(s) 890, 1124, 1178, 1232, 1235
Tsp45I GTSAC 3 cut(s) 59, 275, 843
TspDTI ATGAA 3 cut(s) 818, 1224, 1376
TspGWI ACGGA 1 cut(s) 1090
TspRI CASTG 1 cut(s) 1225
VpaK11BI GGWCC 2 cut(s) 911, 920
XapI RAATTY 3 cut(s) 1141, 1322, 1363
XceI RCATGY 2 cut(s) 831, 1303
XcmI CCANNNNNNNNNTGG 1 cut(s) 656
XmnI GAANNNNTTC 1 cut(s) 1171
XspI CTAG 5 cut(s) 24, 438, 548, 867, 1068
ZrmI AGTACT 2 cut(s) 871, 1318
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.