Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001921

Physical Location & Seq

Genomic Coordinates Reverse (-)

13077723 .. 13084886

Gene Structure 7164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1140600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2424 bp

ATGGAGATGAGTGGCTTTAGGCAAGAATCACATGTTGCACAGCAAAGCCGGAGAGATAAGTTGAGAGTTCATCAAACTTCAAGCCCATCTCACCATCTCGACAATTTGCCCAACAATTCTGGGAAGTTACCACTCCACCCAGGACTAAACCCAGATATTGTGCAAGTTCGAAATGTGAGGAATGCGAATTTGCTGTACGATCCAACAATGTTTTCGTCTGAAATGCTTAATTTTTCGATCAATGCAAACGTTCCGTTGTCAGCTCACAGAGACACAATGGCATGTCATGATCAAGATCTAGGTGCAGCTCAACCCGCCAGTGAGAGTCAGAATTTTGGTAATTGGAGAAGTACTCTTAATCCACCTCAAAGCTTAGATTGGGTGAATACTTACACAAGTGGATATCGGGATGTAGTGCAGTCTAGTTTAGCCAACCCATCTGCTGATCAAATTTCTATTCATCATGTTGCCCAAGAGCATTTGGGAGGAGGAACGATGCATTTTTCGTCTCCTTCGCTGAATTACGTTAATACTCTCCAAGATGTTGTTACTTCAGCTTCTCAAGGGAGGCAGCAGGATCAGCTAGAAATGGCTTCAACTGTGCACCAAAGATTTATTGAAAATGAACTTGTTCGCGTTCCAAGCTACGGTAACCAATCAAACACACTGCGGTTCAGTAATGGTAGTACTCGGTTCAGTAATGGTAGTACTTCTTGGATGGATCGGCAGCCTATTGAGAACTGCCATCGGAGTAGTGGTGGAGGACTAGAATTTAGTATTGCAAAGAGTGTTGATGAAGAAATGAGGACAGGTATGAGTAGTGATTCCAACCAACAAGGGCTGTCGCTATCACTCTCATCAAATCCACCATCTAATAAACTGCCTGTGGCTCAATTAATTGGGTCTCAAGATTTACATGTAAGCACTGATGATCATGATGATCATGCACTTAAGGATCTTCAAAATTCGAAAATGGGGAAATCTTCTGGCGGATACTTGTGTTCCATAACAAAGCCATCTGTTATTAGCAAAGCTTGTGGTAAATCACTTCAGGACATTGTGGGGACTTCTAATACTAGCATTTATCGGAACACTGGTCCTCTTGGTCCTTTCACTGGATATGCAGCGATTTTGAAGAGTTCAAAGTTCTTGAAACCGGCTCAACAGCTACTGGATGAATTCTGTAGGGTTAGTGATTCAAAGCTACTAAAAACATGTGAGGCATCTGAGAGGATGTCCAGAGATGTGAGTACTTCGGCCTCGGCTTCAATATCCACTGAAGCTGTTAATGCAATCGAAACTGAAGTAGTGGCTAAGAGGAACAACTCTGGTGCATCTTTCTCTACGTTTTACGGTTCAAACGAAATTAACAGTGATGGTGGAGCTGCAAGCATATCTTCCGAGTCCTTTCGGCCGAAGTACCAACAAAAGAAAGCAAAGCTCCTATATATGCAGGAGGAGGTTAGCAGAAGGTACAAGCAATATCATCAACAAATGCAAATGGTGGTTGCTTCCTTCGAATCAGTTGCCGGTCTGAGTTCCGCTACACCTTACATATCCATGGCTCTAAACACAGTCGCAAAACACTTCAGGTGTCTTACAAATTCCATCAAGGACCAGCTCAAGCACGTAAGGAAGGCTTTGGGAGAGGAAAATATGTCATCCGCTGTAACTGCTGCTGTTACTGCTGGATGCAGTAGTAAAGGTGAAAAAAATTTGGCCAAGCTAAAGTACATGGGCCTAGGTTTTCAAAAACATACGTCGTCTGGCGGTGGGTCTCTTGTGGGTTTCTCTGAACCCCAACAACACGTCTGGAGACCCCAGAGAGGCCTACCTGAACGTTCAGTAGCCATTCTTCGAGCTTGGCTATTTGAGCATTTTCTTCACCCGTATCCCACGGACACAGATAAGCACATGTTAGCTACTCAAACTGGTCTATCTCGAAACCAGGTTTCAAACTGGTTCATAAATGCCCGAGTGCGCGTTTGGAAGCCCATGGTTGAAGAAATACATATGCTTGAGACTAGAGGAGGCTCCCACGAAGCTGTCCAAGATCCTATCAATAAGGATGAAAATTCTGCAAATGAAGGCACCAGCAGCAGGCCAAACAATGATCACCAACTAAGCATGACTATGATGCCCGATAGACAATTAGAATGCTCAGGAGATGCAGAGCAGCAAAATCAGGAGATGAAGAGGTCTAGATTGGAGTGCCAAGTTCCATCAAGCATGGACGGAGGATTGATGGGTTTTGTCCCGTACCAGCGAGGAGGGTTTGAGGCTGGGGGACTTGGAGCCGTGTCCCTCACATTGGGTCTCAGACATGGGGTAGAAAGTGCCCAGCAGCAGCAACACTTGCAGCAACAAGAGGATCAGCTGCGGCGGCAACTTGGAGGTCAAGTGGTACGTGATTATGTGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010016 GO:0010073 GO:0010074 GO:0010076 GO:0010077 GO:0010223 GO:0010228 GO:0010229 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080006 GO:0080090 GO:0090567 GO:0098727 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

808

Amino Acids

88.78

Weight (kDa)

7.18

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	377 - 537	7.8e-39	Associated with HOX
Homeobox_KN	PF05920	622 - 661	2.2e-19	Homeobox KN domain
Homeodomain	PF00046	629 - 661	2.4e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27990 AT2G27990
fragaria_vesca	FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640
malus_domestica	MD03G1122400.v1.1 MD11G1140600.v1.1
prunus_persica	Prupe.6G105100_v2.0.a1 Prupe.6G105100_v2.0.a1 Prupe.6G105100_v2.0.a1 Prupe.6G105100_v2.0.a1 Prupe.6G105100_v2.0.a1 Prupe.6G105100_v2.0.a1
pyrus_communis	pycom11g11630
rosa_chinensis	RchiOBHm_Chr5g0058351
rosa_laevigata	RLG00000035214
rosa_roxburghii	Rroxscaffold_1G00022230
rosa_rugosa	Rorug05G0313100 Rorug05G0313200 Rorug05G0313300
rosa_samantha	Rh5AG380800 Rh5BG392300 Rh5CG416300 Rh5DG407200
rosa_wichuraiana	Rw5G035880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	2090
AccII	CGCG	2 cut(s)	636, 1983
AciI	CCGC	8 cut(s)	315, 670, 990, 1542, 1665, 1770, 2380, 2383
AclI	AACGTT	2 cut(s)	249, 1840
AclWI	GGATC	6 cut(s)	194, 585, 729, 963, 2048, 2379
AcoI	YGGCCR	2 cut(s)	1412, 1719
AcsI	RAATTY	9 cut(s)	187, 331, 450, 770, 964, 1178, 1603, 1714, 2074
AcuI	CTGAAG	5 cut(s)	537, 1034, 1299, 1323, 1573
AfiI	CCNNNNNNNGG	5 cut(s)	647, 1115, 1826, 2100, 2311
AflII	CTTAAG	1 cut(s)	950
AflIII	ACRYGT	5 cut(s)	31, 916, 1214, 1807, 1914
AjiI	CACGTC	1 cut(s)	1810
AjnI	CCWGG	2 cut(s)	139, 1947
AjuI	GAANNNNNNNTTGG	2 cut(s)	196, 228
Alw21I	GWGCWC	1 cut(s)	606
Alw26I	GTCTC	7 cut(s)	264, 513, 909, 1782, 1810, 2015, 2321
Alw44I	GTGCAC	1 cut(s)	602
AlwI	GGATC	6 cut(s)	194, 585, 729, 963, 2048, 2379
AlwNI	CAGNNNCTG	1 cut(s)	1171
Ama87I	CYCGRG	1 cut(s)	1974
AoxI	GGCC	6 cut(s)	1257, 1412, 1719, 1738, 1828, 2102
ApaLI	GTGCAC	1 cut(s)	602
ApoI	RAATTY	9 cut(s)	187, 331, 450, 770, 964, 1178, 1603, 1714, 2074
AseI	ATTAAT	1 cut(s)	896
Asp700I	GAANNNNTTC	1 cut(s)	630
AspA2I	CCTAGG	1 cut(s)	1741
AspLEI	GCGC	1 cut(s)	1983
AspS9I	GGNCC	4 cut(s)	1097, 1106, 1615, 1738
AsuHPI	GGTGA	5 cut(s)	83, 394, 1718, 1877, 2108
AsuII	TTCGAA	3 cut(s)	169, 968, 1518
AvaI	CYCGRG	1 cut(s)	1974
AvaII	GGWCC	3 cut(s)	1097, 1106, 1615
AvrII	CCTAGG	1 cut(s)	1741
BaeGI	GKGCMC	2 cut(s)	606, 2341
BaeI	ACNNNNGTAYC	2 cut(s)	985, 1018
BalI	TGGCCA	1 cut(s)	1721
BanI	GGYRCC	1 cut(s)	2090
BarI	GAAGNNNNNNTAC	2 cut(s)	1839, 1871
Bbv12I	GWGCWC	1 cut(s)	606
BceAI	ACGGC	1 cut(s)	2282
BcgI	CGANNNNNNTGC	2 cut(s)	1508, 1542
BciT130I	CCWGG	2 cut(s)	141, 1949
BciVI	GTATCC	2 cut(s)	986, 1902
BclI	TGATCA	5 cut(s)	289, 445, 931, 940, 2113
BcoDI	GTCTC	7 cut(s)	264, 513, 909, 1782, 1810, 2015, 2321
BfaI	CTAG	8 cut(s)	299, 423, 584, 767, 1077, 1742, 2025, 2202
BfmI	CTRYAG	1 cut(s)	1183
BfrI	CTTAAG	1 cut(s)	950
BfuI	GTATCC	2 cut(s)	986, 1902
BglII	AGATCT	1 cut(s)	295
BlnI	CCTAGG	1 cut(s)	1741
BmcAI	AGTACT	4 cut(s)	352, 688, 709, 1252
Bme1390I	CCNGG	2 cut(s)	141, 1949
Bme18I	GGWCC	3 cut(s)	1097, 1106, 1615
BmeT110I	CYCGRG	1 cut(s)	1974
BmgBI	CACGTC	1 cut(s)	1810
BmgT120I	GGNCC	4 cut(s)	1097, 1106, 1615, 1738
BmiI	GGNNCC	3 cut(s)	2035, 2092, 2296
BmrFI	CCNGG	2 cut(s)	141, 1949
BmsI	GCATC	6 cut(s)	486, 1232, 1343, 1682, 2127, 2158
BplI	GAGNNNNNCTC	2 cut(s)	337, 369
BpmI	CTGGAG	1 cut(s)	1834
Bpu10I	CCTNAGC	1 cut(s)	2161
Bpu14I	TTCGAA	3 cut(s)	169, 968, 1518
BpuEI	CTTGAG	4 cut(s)	546, 891, 1607, 2039
BsaAI	YACGTR	2 cut(s)	1630, 2408
BsaBI	GATNNNNATC	1 cut(s)	294
BsaI	GGTCTC	4 cut(s)	909, 1782, 1810, 2321
BsaJI	CCNNGG	6 cut(s)	139, 1260, 1560, 1741, 1896, 1995
BsaXI	ACNNNNNCTCC	4 cut(s)	742, 772, 2385, 2415
Bsc4I	CCNNNNNNNGG	5 cut(s)	647, 1115, 1826, 2100, 2311
Bse118I	RCCGGY	2 cut(s)	1156, 1529
Bse1I	ACTGG	6 cut(s)	318, 1099, 1120, 1176, 1936, 1964
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	141, 1949
BseDI	CCNNGG	6 cut(s)	139, 1260, 1560, 1741, 1896, 1995
BseGI	GGATG	7 cut(s)	415, 723, 1180, 1239, 1661, 1697, 2074
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	5 cut(s)	647, 1115, 1826, 2100, 2311
BseMII	CTCAG	4 cut(s)	1218, 1526, 2175, 2332
BseNI	ACTGG	6 cut(s)	318, 1099, 1120, 1176, 1936, 1964
BseRI	GAGGAG	4 cut(s)	501, 1472, 2043, 2283
BseSI	GKGCMC	2 cut(s)	606, 2341
BseX3I	CGGCCG	1 cut(s)	1412
BseYI	CCCAGC	2 cut(s)	2282, 2340
BsgI	GTGCAG	2 cut(s)	324, 437
Bsh1236I	CGCG	2 cut(s)	636, 1983
Bsh1285I	CGRYCG	1 cut(s)	1415
BshFI	GGCC	6 cut(s)	1259, 1414, 1721, 1740, 1830, 2104
BshNI	GGYRCC	1 cut(s)	2090
BsiEI	CGRYCG	1 cut(s)	1415
BsiHKAI	GWGCWC	1 cut(s)	606
BsiHKCI	CYCGRG	1 cut(s)	1974
BsiSI	CCGG	3 cut(s)	49, 1157, 1530
BslFI	GGGAC	4 cut(s)	1078, 2240, 2287, 2301
BslI	CCNNNNNNNGG	5 cut(s)	647, 1115, 1826, 2100, 2311
BsmAI	GTCTC	7 cut(s)	264, 513, 909, 1782, 1810, 2015, 2321
BsmBI	CGTCTC	1 cut(s)	513
BsmFI	GGGAC	4 cut(s)	1078, 2240, 2287, 2301
BsmI	GAATGC	2 cut(s)	187, 2162
BsnI	GGCC	6 cut(s)	1259, 1414, 1721, 1740, 1830, 2104
Bso31I	GGTCTC	4 cut(s)	909, 1782, 1810, 2321
BsoBI	CYCGRG	1 cut(s)	1974
Bsp119I	TTCGAA	3 cut(s)	169, 968, 1518
Bsp1286I	GDGCHC	2 cut(s)	606, 2341
Bsp19I	CCATGG	2 cut(s)	1560, 1995
BspACI	CCGC	8 cut(s)	315, 670, 990, 1542, 1665, 1770, 2380, 2383
BspANI	GGCC	6 cut(s)	1259, 1414, 1721, 1740, 1830, 2104
BspCNI	CTCAG	4 cut(s)	1219, 1527, 2174, 2331
BspFNI	CGCG	2 cut(s)	636, 1983
BspHI	TCATGA	2 cut(s)	286, 934
BspLI	GGNNCC	3 cut(s)	2035, 2092, 2296
BspPI	GGATC	6 cut(s)	194, 585, 729, 963, 2048, 2379
BspT104I	TTCGAA	3 cut(s)	169, 968, 1518
BspT107I	GGYRCC	1 cut(s)	2090
BspTI	CTTAAG	1 cut(s)	950
BspTNI	GGTCTC	4 cut(s)	909, 1782, 1810, 2321
BsrFI	RCCGGY	2 cut(s)	1156, 1529
BsrI	ACTGG	6 cut(s)	318, 1099, 1120, 1176, 1936, 1964
BssAI	RCCGGY	2 cut(s)	1156, 1529
BssECI	CCNNGG	6 cut(s)	139, 1260, 1560, 1741, 1896, 1995
BssT1I	CCWWGG	3 cut(s)	1560, 1741, 1995
Bst2UI	CCWGG	2 cut(s)	141, 1949
Bst4CI	ACNGT	5 cut(s)	601, 650, 1355, 1373, 1576
Bst6I	CTCTTC	2 cut(s)	1130, 2189
BstAFI	CTTAAG	1 cut(s)	950
BstAPI	GCANNNNNTGC	1 cut(s)	2356
BstBAI	YACGTR	2 cut(s)	1630, 2408
BstBI	TTCGAA	3 cut(s)	169, 968, 1518
BstC8I	GCNNGC	2 cut(s)	1390, 2102
BstDEI	CTNAG	7 cut(s)	373, 1227, 1314, 1535, 2123, 2161, 2318
BstDSI	CCRYGG	3 cut(s)	1560, 1896, 1995
BstEII	GGTNACC	1 cut(s)	650
BstF5I	GGATG	7 cut(s)	415, 723, 1180, 1239, 1661, 1697, 2074
BstFNI	CGCG	2 cut(s)	636, 1983
BstHHI	GCGC	1 cut(s)	1983
BstMAI	GTCTC	7 cut(s)	264, 513, 909, 1782, 1810, 2015, 2321
BstMCI	CGRYCG	1 cut(s)	1415
BstNI	CCWGG	2 cut(s)	141, 1949
BstNSI	RCATGY	5 cut(s)	35, 285, 920, 1218, 1918
BstPI	GGTNACC	1 cut(s)	650
BstSCI	CCNGG	2 cut(s)	139, 1947
BstSFI	CTRYAG	1 cut(s)	1183
BstSLI	GKGCMC	2 cut(s)	606, 2341
BstUI	CGCG	2 cut(s)	636, 1983
BstX2I	RGATCY	3 cut(s)	295, 955, 2053
BstYI	RGATCY	3 cut(s)	295, 955, 2053
BstZI	CGGCCG	1 cut(s)	1412
BsuI	GTATCC	2 cut(s)	986, 1902
BsuRI	GGCC	6 cut(s)	1259, 1414, 1721, 1740, 1830, 2104
BtgI	CCRYGG	3 cut(s)	1560, 1896, 1995
BtrI	CACGTC	1 cut(s)	1810
BtsCI	GGATG	7 cut(s)	415, 723, 1180, 1239, 1661, 1697, 2074
BtsI	GCAGTG	1 cut(s)	665
BtsIMutI	CAGTG	7 cut(s)	325, 665, 924, 1092, 1113, 1275, 1378
Cac8I	GCNNGC	2 cut(s)	1390, 2102
CaiI	CAGNNNCTG	1 cut(s)	1171
CciI	TCATGA	2 cut(s)	286, 934
CfoI	GCGC	1 cut(s)	1983
Cfr10I	RCCGGY	2 cut(s)	1156, 1529
Cfr13I	GGNCC	4 cut(s)	1097, 1106, 1615, 1738
CsiI	ACCWGGT	1 cut(s)	1947
CspCI	CAANNNNNGTGG	2 cut(s)	1018, 1053
DdeI	CTNAG	7 cut(s)	373, 1227, 1314, 1535, 2123, 2161, 2318
EaeI	YGGCCR	2 cut(s)	1412, 1719
EagI	CGGCCG	1 cut(s)	1412
Eam1104I	CTCTTC	2 cut(s)	1130, 2189
EarI	CTCTTC	2 cut(s)	1130, 2189
EciI	GGCGGA	1 cut(s)	1005
EclXI	CGGCCG	1 cut(s)	1412
Eco130I	CCWWGG	3 cut(s)	1560, 1741, 1995
Eco147I	AGGCCT	1 cut(s)	1830
Eco31I	GGTCTC	4 cut(s)	909, 1782, 1810, 2321
Eco32I	GATATC	1 cut(s)	404
Eco47I	GGWCC	3 cut(s)	1097, 1106, 1615
Eco52I	CGGCCG	1 cut(s)	1412
Eco57I	CTGAAG	5 cut(s)	537, 1034, 1299, 1323, 1573
Eco88I	CYCGRG	1 cut(s)	1974
Eco91I	GGTNACC	1 cut(s)	650
EcoO65I	GGTNACC	1 cut(s)	650
EcoRI	GAATTC	1 cut(s)	1178
EcoRII	CCWGG	2 cut(s)	139, 1947
EcoRV	GATATC	1 cut(s)	404
EcoT14I	CCWWGG	3 cut(s)	1560, 1741, 1995
EcoT22I	ATGCAT	1 cut(s)	501
ErhI	CCWWGG	3 cut(s)	1560, 1741, 1995
Esp3I	CGTCTC	1 cut(s)	513
FalI	AAGNNNNNCTT	4 cut(s)	1381, 1413, 1624, 1656
FaqI	GGGAC	4 cut(s)	1078, 2240, 2287, 2301
FauI	CCCGC	1 cut(s)	322
FauNDI	CATATG	1 cut(s)	2013
FbaI	TGATCA	5 cut(s)	289, 445, 931, 940, 2113
FokI	GGATG	7 cut(s)	422, 730, 1187, 1246, 1648, 1704, 2081
FspBI	CTAG	8 cut(s)	299, 423, 584, 767, 1077, 1742, 2025, 2202
GlaI	GCGC	1 cut(s)	1982
GsaI	CCCAGC	2 cut(s)	2286, 2344
GsuI	CTGGAG	1 cut(s)	1834
HaeIII	GGCC	6 cut(s)	1259, 1414, 1721, 1740, 1830, 2104
HapII	CCGG	3 cut(s)	49, 1157, 1530
HhaI	GCGC	1 cut(s)	1983
Hin6I	GCGC	1 cut(s)	1981
HinP1I	GCGC	1 cut(s)	1981
HindIII	AAGCTT	2 cut(s)	370, 1032
HinfI	GANTC	6 cut(s)	26, 325, 824, 1196, 1403, 1520
HpaII	CCGG	3 cut(s)	49, 1157, 1530
HphI	GGTGA	5 cut(s)	83, 394, 1718, 1877, 2108
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	9 cut(s)	220, 330, 750, 1089, 1228, 1402, 1536, 1795, 2321
Hpy8I	GTNNAC	1 cut(s)	604
Hpy99I	CGWCG	1 cut(s)	1765
HpyAV	CCTTC	5 cut(s)	522, 1464, 1525, 1630, 2081
HpyCH4III	ACNGT	5 cut(s)	601, 650, 1355, 1373, 1576
HpyCH4IV	ACGT	8 cut(s)	249, 525, 1346, 1629, 1760, 1809, 1840, 2407
HpyF3I	CTNAG	7 cut(s)	373, 1227, 1314, 1535, 2123, 2161, 2318
HpySE526I	ACGT	8 cut(s)	249, 525, 1346, 1629, 1760, 1809, 1840, 2407
HspAI	GCGC	1 cut(s)	1981
Ksp22I	TGATCA	5 cut(s)	289, 445, 931, 940, 2113
LmnI	GCTCC	4 cut(s)	1382, 1446, 2039, 2294
LweI	GCATC	6 cut(s)	486, 1232, 1343, 1682, 2127, 2158
MabI	ACCWGGT	1 cut(s)	1947
MaeI	CTAG	8 cut(s)	299, 423, 584, 767, 1077, 1742, 2025, 2202
MaeII	ACGT	8 cut(s)	249, 525, 1346, 1629, 1760, 1809, 1840, 2407
MaeIII	GTNAC	5 cut(s)	126, 547, 650, 1669, 1681
MboII	GAAGA	9 cut(s)	809, 950, 975, 1147, 1389, 1847, 1874, 2015, 2206
MflI	RGATCY	3 cut(s)	295, 955, 2053
MhlI	GDGCHC	2 cut(s)	606, 2341
MlsI	TGGCCA	1 cut(s)	1721
MluNI	TGGCCA	1 cut(s)	1721
MlyI	GAGTC	2 cut(s)	334, 1412
MmeI	TCCRAC	2 cut(s)	227, 852
Mox20I	TGGCCA	1 cut(s)	1721
Mph1103I	ATGCAT	1 cut(s)	501
MroXI	GAANNNNTTC	1 cut(s)	630
MscI	TGGCCA	1 cut(s)	1721
MseI	TTAA	7 cut(s)	228, 357, 528, 896, 951, 1287, 1368
MslI	CAYNNNNRTG	2 cut(s)	1559, 2132
Msp20I	TGGCCA	1 cut(s)	1721
MspA1I	CMGCKG	2 cut(s)	1667, 2377
MspCI	CTTAAG	1 cut(s)	950
MspI	CCGG	3 cut(s)	49, 1157, 1530
MspR9I	CCNGG	2 cut(s)	141, 1949
Mva1269I	GAATGC	2 cut(s)	187, 2162
MvaI	CCWGG	2 cut(s)	141, 1949
MvnI	CGCG	2 cut(s)	636, 1983
NcoI	CCATGG	2 cut(s)	1560, 1995
NdeI	CATATG	1 cut(s)	2013
NlaIV	GGNNCC	3 cut(s)	2035, 2092, 2296
NmeAIII	GCCGAG	1 cut(s)	1241
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	5 cut(s)	35, 285, 920, 1218, 1918
NspV	TTCGAA	3 cut(s)	169, 968, 1518
PagI	TCATGA	2 cut(s)	286, 934
PceI	AGGCCT	1 cut(s)	1830
PciI	ACATGT	4 cut(s)	31, 916, 1214, 1914
PcsI	WCGNNNNNNNCGW	1 cut(s)	1359
PctI	GAATGC	2 cut(s)	187, 2162
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	4 cut(s)	26, 824, 1196, 1520
PleI	GAGTC	2 cut(s)	333, 1411
PpsI	GAGTC	2 cut(s)	333, 1411
Ppu21I	YACGTR	2 cut(s)	1630, 2408
PscI	ACATGT	4 cut(s)	31, 916, 1214, 1914
PshBI	ATTAAT	1 cut(s)	896
Psp1406I	AACGTT	2 cut(s)	249, 1840
Psp6I	CCWGG	2 cut(s)	139, 1947
PspEI	GGTNACC	1 cut(s)	650
PspFI	CCCAGC	2 cut(s)	2282, 2340
PspGI	CCWGG	2 cut(s)	139, 1947
PspN4I	GGNNCC	3 cut(s)	2035, 2092, 2296
PspPI	GGNCC	4 cut(s)	1097, 1106, 1615, 1738
PstNI	CAGNNNCTG	1 cut(s)	1171
PsuI	RGATCY	3 cut(s)	295, 955, 2053
PvuII	CAGCTG	1 cut(s)	2377
RseI	CAYNNNNRTG	2 cut(s)	1559, 2132
SaqAI	TTAA	7 cut(s)	228, 357, 528, 896, 951, 1287, 1368
Sau96I	GGNCC	4 cut(s)	1097, 1106, 1615, 1738
ScaI	AGTACT	4 cut(s)	352, 688, 709, 1252
SchI	GAGTC	2 cut(s)	334, 1412
ScrFI	CCNGG	2 cut(s)	141, 1949
SduI	GDGCHC	2 cut(s)	606, 2341
SexAI	ACCWGGT	1 cut(s)	1947
SfaNI	GCATC	6 cut(s)	486, 1232, 1343, 1682, 2127, 2158
SfcI	CTRYAG	1 cut(s)	1183
SfuI	TTCGAA	3 cut(s)	169, 968, 1518
SinI	GGWCC	3 cut(s)	1097, 1106, 1615
SmiMI	CAYNNNNRTG	2 cut(s)	1559, 2132
SmlI	CTYRAG	5 cut(s)	561, 906, 950, 1622, 2018
SmoI	CTYRAG	5 cut(s)	561, 906, 950, 1622, 2018
SseBI	AGGCCT	1 cut(s)	1830
SsiI	CCGC	8 cut(s)	315, 670, 990, 1542, 1665, 1770, 2380, 2383
SspMI	CTAG	8 cut(s)	299, 423, 584, 767, 1077, 1742, 2025, 2202
StuI	AGGCCT	1 cut(s)	1830
StyD4I	CCNGG	2 cut(s)	139, 1947
StyI	CCWWGG	3 cut(s)	1560, 1741, 1995
TaaI	ACNGT	5 cut(s)	601, 650, 1355, 1373, 1576
TaiI	ACGT	8 cut(s)	252, 528, 1349, 1632, 1763, 1812, 1843, 2410
TaqI	TCGA	8 cut(s)	99, 169, 236, 968, 1296, 1518, 1858, 1942
TatI	WGTACW	5 cut(s)	350, 686, 707, 1250, 1731
TauI	GCSGC	2 cut(s)	2383, 2386
TfiI	GAWTC	4 cut(s)	26, 824, 1196, 1520
Tru1I	TTAA	7 cut(s)	228, 357, 528, 896, 951, 1287, 1368
Tru9I	TTAA	7 cut(s)	228, 357, 528, 896, 951, 1287, 1368
TscAI	CASTG	7 cut(s)	325, 672, 931, 1099, 1120, 1282, 1378
TspDTI	ATGAA	9 cut(s)	59, 449, 639, 810, 1191, 1954, 2085, 2100, 2207
TspGWI	ACGGA	3 cut(s)	243, 1913, 2250
TspRI	CASTG	7 cut(s)	325, 672, 931, 1099, 1120, 1282, 1378
Vha464I	CTTAAG	1 cut(s)	950
VneI	GTGCAC	1 cut(s)	602
VpaK11BI	GGWCC	3 cut(s)	1097, 1106, 1615
VspI	ATTAAT	1 cut(s)	896
XapI	RAATTY	9 cut(s)	187, 331, 450, 770, 964, 1178, 1603, 1714, 2074
XbaI	TCTAGA	1 cut(s)	2201
XceI	RCATGY	5 cut(s)	35, 285, 920, 1218, 1918
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XmaJI	CCTAGG	1 cut(s)	1741
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	8 cut(s)	299, 423, 584, 767, 1077, 1742, 2025, 2202
ZrmI	AGTACT	4 cut(s)	352, 688, 709, 1252
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.