Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001921

Physical Location & Seq

Genomic Coordinates Reverse (-)

27423159 .. 27430868

Gene Structure 7710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00022230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2274 bp

ATGGAGATGAGTGGCTTTAGGCCTAGTGAATCCACCCATGTAGCTCAACAAAGCCGCCGTGATAAGTTGCGAGTTCAACAAACATCAAACCTATCCCATCATCATTTAGATCATAATGTACCGAACAATTCACCAACCCACCAAAACCCAGATATTGTTCAAGTTCGAAATGTCAGAAATGCCAATAATCTACTTTTTGATCCGACCCTTTTCTCCCCAGAACTTCTCAATTTTTCGATAAATGCAAATCATGCATTTGCATCATCAGCTCAAGATTTAGGTGACGAGAGTCCTCAGAATTATGGTAATTGGAGAAATCTAAACCCACCCCAAAGCTTAGATAATTGGGTTACCAATTACACGAGTGGTACTACTTCAAACCACCATATGTTTGTTAGGGAAGTAAGTAACATTTCTCCATCCACACCATCAAATTTAAAGCCTGGTACTTACCATGGCTACCAGCAATTTTCTTCTCCACCTCCAATTTACCATAATACCCTCCAAGATGTTGTCACTACAGCTTCCACCGGAGGAAGCCATCAGGATCAGCTAGAAATGGCTTCATGGACTCAAGGCTATGTAAATCAATCCAGTACATTGGGATTCGATAACTCGAGTTCTTGGATGGATCGTCCAATTGGGAGTAATCGCCATAACTGGAGCGGGGGCGAAGAATTGAGATGTGCTATGAGTGATTATTCCAATCAACAAGGCCTGTCTCTATCACTTTCTTCAAATCCTCCACCTTCACAACAATTGCAAGCAAGTACTAGTGGGAAATCTGGCGGTTACTTATGTTCGATGATGAAGCCATCAATTATAAGCAAAGCGTATGGAAATACCAAATCACTTCAAGACATGGTTGGGACTAGTGCTACTTCTACTAGTAATACTGCATATCATAGAAGCACGGGTCCGCTTGGTCCTTTCACTGGATATGCAACGATTTTGAAGAGTTCCAAGTTCTTGAAACCGGCACAACAGCTGTTGGAAGAGTTCTGTAGAGTTAGTAATTCGAAGGCATTCAAAACGTGCGAGGCATCTGAGAGGATATCTGGGGATCAAGCCAGTGCTTCTGCTTCTGTTTCCGTTACAGTCTCGAATGATCAAGCTGCTAATACAACTCAAAATTCCGTAGTTGCTAATATGGGGAGGAATAATTCTGGTGCATCATCCTCTGCATTTTACGGTTCGAATGAAATTAGCAGTGATGGTGGAGCTGCTGCAAGCCCGTCTTCTGAGTCGTTTAGGCCGGAGTACCAACAGAAGAAGGCAAAACTCCTACACATGCAAGACGAGGTATGCAGAAAGTACAAGCAGTATCATCAACAAATGGAAATGGTAGTCTCTTCCTTTGAGTCAGTTGCAGGTCTCAGTTCTGCGACTCCCTACATGTCATTGGCTCTCAACACAGTCTCAAGACACTTCAAATGTCTTACTGGTTCCATCAAAGATCAGCTCAAGCACATAAGAAAAGCTTTGGGGGAGGATTTCTCATCAGTCAAGATGGCCAGTAATATTGGCGGTAATAGTAAAAGTGATAAAACCATGGGCAAGCTAAAGTATATGGGCCTCGGCTTGCAAAAGCATAAAGCCGCGGCTGGGGTCGATTCCGGCTTCTCTGAACCCCAACAACACGTCTGGAGGCCCCAAAGAGGCCTACCGGATCGTTCAGTGGCCATCCTTAGAGCATGGCTCTTTGATCATTTTCTTCACCCGTATCCAACGGACACAGATAAGCACATGTTAGCCACTCAAACCGGTTTGTCTAGAAACCAGGTGTCAAACTGGTTTATAAATGCCCGAGTGCGTGTGTGGAAGCCAATGGTTGAAGAAATACACATGCTTGAGACTCGAGGATCCATGGAAGCTTGCCAAGATCCTGGGAAAGATGGAAATTCTCCAACCGAAGGCACCAGCAGGCCAAACAATGAGCAACTTGGCATGCATCATGTTATAACTGATAGGCAATTGGAATCCTCTGGTATAGGTTCCTTGAGAGATGCACCAAATGTAGAAGAAGTAGACCAAAGTCAGGAGATCAAGAGGTCCAGAATAGAATGTCAAGTTCCATCAAGCATGGATAGTGCATTGATGGGTTTTGTGCCATACAATCGAAGCGGGCTTGAGGTTGGGGGACTTGGAGCGGTTTCATTGACATTGGGGCTCAGGCATGGGGTGGAAAACGCCCAGCAGCAGCAGCAGCAGCAGCACAACAATTGCATCAACAGGAGGAATATCAGCTTAGGCGGCAACTTGGAGGTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010016 GO:0010073 GO:0010074 GO:0010076 GO:0010077 GO:0010223 GO:0010228 GO:0010229 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080006 GO:0080090 GO:0090567 GO:0098727 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

757

Amino Acids

83.02

Weight (kDa)

8.01

Isoelectric Point (pI)

53.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	317 - 484	2.2e-40	Associated with HOX
Homeobox_KN	PF05920	566 - 605	2.2e-19	Homeobox KN domain
Homeodomain	PF00046	573 - 605	2.8e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27990 AT2G27990
fragaria_vesca	FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640 FvH4_3g31640
malus_domestica	MD03G1122400.v1.1 MD11G1140600.v1.1
prunus_persica	Prupe.6G105100_v2.0.a1 Prupe.6G105100_v2.0.a1 Prupe.6G105100_v2.0.a1 Prupe.6G105100_v2.0.a1 Prupe.6G105100_v2.0.a1 Prupe.6G105100_v2.0.a1
pyrus_communis	pycom11g11630
rosa_chinensis	RchiOBHm_Chr5g0058351
rosa_laevigata	RLG00000035214
rosa_roxburghii	Rroxscaffold_1G00022230
rosa_rugosa	Rorug05G0313100 Rorug05G0313200 Rorug05G0313300
rosa_samantha	Rh5AG380800 Rh5BG392300 Rh5CG416300 Rh5DG407200
rosa_wichuraiana	Rw5G035880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	824, 1799, 1961
Acc36I	ACCTGC	1 cut(s)	1361
AccB1I	GGYRCC	1 cut(s)	1916
AccBSI	CCGCTC	2 cut(s)	666, 2150
AccI	GTMKAC	1 cut(s)	2028
AccII	CGCG	1 cut(s)	1601
AclWI	GGATC	8 cut(s)	194, 555, 639, 1071, 1677, 1857, 1870, 1877
AcoI	YGGCCR	2 cut(s)	1512, 1680
AcsI	RAATTY	3 cut(s)	433, 1132, 1900
AfaI	GTAC	7 cut(s)	120, 370, 448, 598, 772, 1262, 1316
AfiI	CCNNNNNNNGG	5 cut(s)	935, 1605, 1658, 1913, 2038
AflIII	ACRYGT	3 cut(s)	1395, 1639, 1746
AgeI	ACCGGT	1 cut(s)	1763
AhlI	ACTAGT	3 cut(s)	773, 872, 887
AjiI	CACGTC	1 cut(s)	1642
AjnI	CCWGG	3 cut(s)	442, 1779, 1885
Alw26I	GTCTC	6 cut(s)	726, 1105, 1354, 1379, 1423, 1847
AlwI	GGATC	8 cut(s)	194, 555, 639, 1071, 1677, 1857, 1870, 1877
Ama87I	CYCGRG	3 cut(s)	616, 1806, 1857
AoxI	GGCC	9 cut(s)	20, 715, 1253, 1512, 1573, 1649, 1660, 1680, 1925
ApeKI	GCWGC	9 cut(s)	1115, 1223, 1226, 2197, 2200, 2203, 2206, 2209, 2212
ApoI	RAATTY	3 cut(s)	433, 1132, 1900
AsiGI	ACCGGT	1 cut(s)	1763
Asp700I	GAANNNNTTC	1 cut(s)	1025
AspS9I	GGNCC	5 cut(s)	917, 926, 1573, 1650, 2052
AsuHPI	GGTGA	3 cut(s)	123, 293, 1709
AsuII	TTCGAA	3 cut(s)	166, 1019, 1196
AvaI	CYCGRG	3 cut(s)	616, 1806, 1857
AvaII	GGWCC	3 cut(s)	917, 926, 2052
BalI	TGGCCA	2 cut(s)	1514, 1682
BamHI	GGATCC	1 cut(s)	1862
BanI	GGYRCC	1 cut(s)	1916
BanII	GRGCYC	1 cut(s)	2172
BauI	CACGAG	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	1230
BbvI	GCAGC	9 cut(s)	1102, 1210, 1213, 2209, 2212, 2215, 2218, 2221, 2224
BceAI	ACGGC	1 cut(s)	42
BciT130I	CCWGG	3 cut(s)	444, 1781, 1887
BciVI	GTATCC	1 cut(s)	1734
BclI	TGATCA	2 cut(s)	1108, 1705
BcoDI	GTCTC	6 cut(s)	726, 1105, 1354, 1379, 1423, 1847
BcuI	ACTAGT	3 cut(s)	773, 872, 887
BfaI	CTAG	6 cut(s)	24, 554, 774, 873, 888, 1773
BfmI	CTRYAG	2 cut(s)	519, 1003
BfuAI	ACCTGC	1 cut(s)	1361
BfuI	GTATCC	1 cut(s)	1734
BmcAI	AGTACT	1 cut(s)	772
Bme1390I	CCNGG	3 cut(s)	444, 1781, 1887
Bme18I	GGWCC	3 cut(s)	917, 926, 2052
BmeT110I	CYCGRG	3 cut(s)	616, 1806, 1857
BmgBI	CACGTC	1 cut(s)	1642
BmgT120I	GGNCC	5 cut(s)	917, 926, 1573, 1650, 2052
BmiI	GGNNCC	6 cut(s)	918, 1447, 1652, 1864, 1918, 1996
BmrFI	CCNGG	3 cut(s)	444, 1781, 1887
BmsI	GCATC	6 cut(s)	269, 1052, 1181, 1960, 1996, 2235
BoxI	GACNNNNGTC	2 cut(s)	288, 2034
BpiI	GAAGAC	1 cut(s)	1230
BplI	GAGNNNNNCTC	4 cut(s)	1481, 1513, 1683, 1715
BpmI	CTGGAG	2 cut(s)	682, 1666
Bpu10I	CCTNAGC	2 cut(s)	2171, 2248
Bpu14I	TTCGAA	3 cut(s)	166, 1019, 1196
BpuEI	CTTGAG	7 cut(s)	255, 558, 1405, 1448, 1871, 2020, 2150
BsaI	GGTCTC	1 cut(s)	1379
BsaJI	CCNNGG	6 cut(s)	454, 1551, 1576, 1599, 1866, 1886
BsaWI	WCCGGW	3 cut(s)	530, 1666, 1763
Bsc4I	CCNNNNNNNGG	5 cut(s)	935, 1605, 1658, 1913, 2038
Bse118I	RCCGGY	2 cut(s)	976, 1763
Bse1I	ACTGG	7 cut(s)	594, 665, 940, 1071, 1447, 1515, 1796
BseBI	CCWGG	3 cut(s)	444, 1781, 1887
BseDI	CCNNGG	6 cut(s)	454, 1551, 1576, 1599, 1866, 1886
BseGI	GGATG	4 cut(s)	419, 633, 1175, 1683
BseLI	CCNNNNNNNGG	5 cut(s)	935, 1605, 1658, 1913, 2038
BseMII	CTCAG	5 cut(s)	308, 1038, 1233, 1390, 2185
BseNI	ACTGG	7 cut(s)	594, 665, 940, 1071, 1447, 1515, 1796
BseXI	GCAGC	9 cut(s)	1102, 1210, 1213, 2209, 2212, 2215, 2218, 2221, 2224
BseYI	CCCAGC	2 cut(s)	1604, 2193
Bsh1236I	CGCG	1 cut(s)	1601
BshFI	GGCC	9 cut(s)	22, 717, 1255, 1514, 1575, 1651, 1662, 1682, 1927
BshNI	GGYRCC	1 cut(s)	1916
BshTI	ACCGGT	1 cut(s)	1763
BsiHKCI	CYCGRG	3 cut(s)	616, 1806, 1857
BsiSI	CCGG	6 cut(s)	531, 977, 1256, 1617, 1667, 1764
BslFI	GGGAC	2 cut(s)	883, 2154
BslI	CCNNNNNNNGG	5 cut(s)	935, 1605, 1658, 1913, 2038
BsmAI	GTCTC	6 cut(s)	726, 1105, 1354, 1379, 1423, 1847
BsmFI	GGGAC	2 cut(s)	883, 2154
BsmI	GAATGC	1 cut(s)	1025
BsnI	GGCC	9 cut(s)	22, 717, 1255, 1514, 1575, 1651, 1662, 1682, 1927
Bso31I	GGTCTC	1 cut(s)	1379
BsoBI	CYCGRG	3 cut(s)	616, 1806, 1857
Bsp119I	TTCGAA	3 cut(s)	166, 1019, 1196
Bsp1286I	GDGCHC	1 cut(s)	2172
Bsp19I	CCATGG	3 cut(s)	454, 1551, 1866
BspANI	GGCC	9 cut(s)	22, 717, 1255, 1514, 1575, 1651, 1662, 1682, 1927
BspCNI	CTCAG	5 cut(s)	307, 1039, 1234, 1389, 2184
BspFNI	CGCG	1 cut(s)	1601
BspLI	GGNNCC	6 cut(s)	918, 1447, 1652, 1864, 1918, 1996
BspMI	ACCTGC	1 cut(s)	1361
BspPI	GGATC	8 cut(s)	194, 555, 639, 1071, 1677, 1857, 1870, 1877
BspT104I	TTCGAA	3 cut(s)	166, 1019, 1196
BspT107I	GGYRCC	1 cut(s)	1916
BspTNI	GGTCTC	1 cut(s)	1379
BsrBI	CCGCTC	2 cut(s)	666, 2150
BsrFI	RCCGGY	2 cut(s)	976, 1763
BsrI	ACTGG	7 cut(s)	594, 665, 940, 1071, 1447, 1515, 1796
BssAI	RCCGGY	2 cut(s)	976, 1763
BssECI	CCNNGG	6 cut(s)	454, 1551, 1576, 1599, 1866, 1886
BssSI	CACGAG	1 cut(s)	361
BssT1I	CCWWGG	3 cut(s)	454, 1551, 1866
Bst2BI	CACGAG	1 cut(s)	361
Bst2UI	CCWGG	3 cut(s)	444, 1781, 1887
Bst4CI	ACNGT	3 cut(s)	1099, 1193, 1417
Bst6I	CTCTTC	3 cut(s)	950, 990, 1357
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstBI	TTCGAA	3 cut(s)	166, 1019, 1196
BstC8I	GCNNGC	8 cut(s)	765, 1231, 1559, 1583, 1876, 1925, 1949, 2126
BstDEI	CTNAG	8 cut(s)	294, 337, 1047, 1242, 1376, 1688, 2171, 2248
BstDSI	CCRYGG	4 cut(s)	454, 1551, 1599, 1866
BstEII	GGTNACC	1 cut(s)	349
BstF5I	GGATG	4 cut(s)	419, 633, 1175, 1683
BstFNI	CGCG	1 cut(s)	1601
BstMAI	GTCTC	6 cut(s)	726, 1105, 1354, 1379, 1423, 1847
BstMWI	GCNNNNNNNGC	7 cut(s)	251, 266, 2203, 2206, 2209, 2212, 2253
BstNI	CCWGG	3 cut(s)	444, 1781, 1887
BstNSI	RCATGY	5 cut(s)	1294, 1399, 1750, 1849, 1951
BstPAI	GACNNNNGTC	2 cut(s)	288, 2034
BstPI	GGTNACC	1 cut(s)	349
BstSCI	CCNGG	3 cut(s)	442, 1779, 1885
BstSFI	CTRYAG	2 cut(s)	519, 1003
BstUI	CGCG	1 cut(s)	1601
BstV1I	GCAGC	9 cut(s)	1102, 1210, 1213, 2209, 2212, 2215, 2218, 2221, 2224
BstV2I	GAAGAC	1 cut(s)	1230
BstX2I	RGATCY	2 cut(s)	1862, 1882
BstXI	CCANNNNNNTGG	2 cut(s)	601, 1886
BstYI	RGATCY	2 cut(s)	1862, 1882
BsuI	GTATCC	1 cut(s)	1734
BsuRI	GGCC	9 cut(s)	22, 717, 1255, 1514, 1575, 1651, 1662, 1682, 1927
BtgI	CCRYGG	4 cut(s)	454, 1551, 1599, 1866
BtrI	CACGTC	1 cut(s)	1642
BtsCI	GGATG	4 cut(s)	419, 633, 1175, 1683
BtsI	GCAGTG	1 cut(s)	1216
BtsIMutI	CAGTG	4 cut(s)	933, 1078, 1216, 1683
BveI	ACCTGC	1 cut(s)	1361
Cac8I	GCNNGC	8 cut(s)	765, 1231, 1559, 1583, 1876, 1925, 1949, 2126
Cfr10I	RCCGGY	2 cut(s)	976, 1763
Cfr13I	GGNCC	5 cut(s)	917, 926, 1573, 1650, 2052
Cfr42I	CCGCGG	1 cut(s)	1602
CsiI	ACCWGGT	1 cut(s)	1779
Csp6I	GTAC	7 cut(s)	119, 369, 447, 597, 771, 1261, 1315
CspAI	ACCGGT	1 cut(s)	1763
CviQI	GTAC	7 cut(s)	119, 369, 447, 597, 771, 1261, 1315
DdeI	CTNAG	8 cut(s)	294, 337, 1047, 1242, 1376, 1688, 2171, 2248
DraI	TTTAAA	1 cut(s)	438
EaeI	YGGCCR	2 cut(s)	1512, 1680
Eam1104I	CTCTTC	3 cut(s)	950, 990, 1357
EarI	CTCTTC	3 cut(s)	950, 990, 1357
Eco130I	CCWWGG	3 cut(s)	454, 1551, 1866
Eco147I	AGGCCT	3 cut(s)	22, 717, 1662
Eco24I	GRGCYC	1 cut(s)	2172
Eco31I	GGTCTC	1 cut(s)	1379
Eco32I	GATATC	1 cut(s)	1056
Eco47I	GGWCC	3 cut(s)	917, 926, 2052
Eco88I	CYCGRG	3 cut(s)	616, 1806, 1857
Eco91I	GGTNACC	1 cut(s)	349
EcoO109I	RGGNCCY	1 cut(s)	1650
EcoO65I	GGTNACC	1 cut(s)	349
EcoRII	CCWGG	3 cut(s)	442, 1779, 1885
EcoRV	GATATC	1 cut(s)	1056
EcoT14I	CCWWGG	3 cut(s)	454, 1551, 1866
EcoT22I	ATGCAT	2 cut(s)	256, 1953
EcoT38I	GRGCYC	1 cut(s)	2172
ErhI	CCWWGG	3 cut(s)	454, 1551, 1866
FalI	AAGNNNNNCTT	4 cut(s)	1222, 1254, 1465, 1497
FaqI	GGGAC	2 cut(s)	883, 2154
FauI	CCCGC	2 cut(s)	659, 2117
FauNDI	CATATG	1 cut(s)	387
FbaI	TGATCA	2 cut(s)	1108, 1705
FblI	GTMKAC	1 cut(s)	2028
FokI	GGATG	4 cut(s)	406, 640, 1162, 1670
FriOI	GRGCYC	1 cut(s)	2172
FspBI	CTAG	6 cut(s)	24, 554, 774, 873, 888, 1773
GsaI	CCCAGC	2 cut(s)	1608, 2197
GsuI	CTGGAG	2 cut(s)	682, 1666
HaeIII	GGCC	9 cut(s)	22, 717, 1255, 1514, 1575, 1651, 1662, 1682, 1927
HapII	CCGG	6 cut(s)	531, 977, 1256, 1617, 1667, 1764
HindIII	AAGCTT	3 cut(s)	334, 1479, 1872
HpaII	CCGG	6 cut(s)	531, 977, 1256, 1617, 1667, 1764
HphI	GGTGA	3 cut(s)	123, 293, 1709
Hpy166II	GTNNAC	1 cut(s)	2029
Hpy188I	TCNGA	6 cut(s)	176, 204, 297, 1048, 1243, 1627
Hpy8I	GTNNAC	1 cut(s)	2029
HpyAV	CCTTC	4 cut(s)	759, 1015, 1267, 1907
HpyCH4III	ACNGT	3 cut(s)	1099, 1193, 1417
HpyCH4IV	ACGT	2 cut(s)	1034, 1641
HpyF10VI	GCNNNNNNNGC	7 cut(s)	251, 266, 2203, 2206, 2209, 2212, 2253
HpyF3I	CTNAG	8 cut(s)	294, 337, 1047, 1242, 1376, 1688, 2171, 2248
HpySE526I	ACGT	2 cut(s)	1034, 1641
Ksp22I	TGATCA	2 cut(s)	1108, 1705
KspI	CCGCGG	1 cut(s)	1602
LmnI	GCTCC	3 cut(s)	663, 1220, 2147
Lsp1109I	GCAGC	9 cut(s)	1102, 1210, 1213, 2209, 2212, 2215, 2218, 2221, 2224
LweI	GCATC	6 cut(s)	269, 1052, 1181, 1960, 1996, 2235
MabI	ACCWGGT	1 cut(s)	1779
MaeI	CTAG	6 cut(s)	24, 554, 774, 873, 888, 1773
MaeII	ACGT	2 cut(s)	1034, 1641
MaeIII	GTNAC	7 cut(s)	281, 349, 407, 514, 791, 1093, 2266
MbiI	CCGCTC	2 cut(s)	666, 2150
MfeI	CAATTG	4 cut(s)	639, 758, 1973, 2221
MflI	RGATCY	2 cut(s)	1862, 1882
MhlI	GDGCHC	1 cut(s)	2172
MlsI	TGGCCA	2 cut(s)	1514, 1682
MluNI	TGGCCA	2 cut(s)	1514, 1682
MlyI	GAGTC	6 cut(s)	298, 565, 1253, 1370, 1381, 1849
MmeI	TCCRAC	4 cut(s)	227, 972, 1751, 1931
Mox20I	TGGCCA	2 cut(s)	1514, 1682
Mph1103I	ATGCAT	2 cut(s)	256, 1953
MroXI	GAANNNNTTC	1 cut(s)	1025
MscI	TGGCCA	2 cut(s)	1514, 1682
MseI	TTAA	1 cut(s)	437
Msp20I	TGGCCA	2 cut(s)	1514, 1682
MspA1I	CMGCKG	2 cut(s)	988, 1601
MspI	CCGG	6 cut(s)	531, 977, 1256, 1617, 1667, 1764
MspR9I	CCNGG	3 cut(s)	444, 1781, 1887
MunI	CAATTG	4 cut(s)	639, 758, 1973, 2221
Mva1269I	GAATGC	1 cut(s)	1025
MvaI	CCWGG	3 cut(s)	444, 1781, 1887
MvnI	CGCG	1 cut(s)	1601
MwoI	GCNNNNNNNGC	7 cut(s)	251, 266, 2203, 2206, 2209, 2212, 2253
NcoI	CCATGG	3 cut(s)	454, 1551, 1866
NdeI	CATATG	1 cut(s)	387
NlaIV	GGNNCC	6 cut(s)	918, 1447, 1652, 1864, 1918, 1996
NmeAIII	GCCGAG	1 cut(s)	1557
NmuCI	GTSAC	3 cut(s)	281, 514, 2266
NsiI	ATGCAT	2 cut(s)	256, 1953
NspI	RCATGY	5 cut(s)	1294, 1399, 1750, 1849, 1951
NspV	TTCGAA	3 cut(s)	166, 1019, 1196
PaeI	GCATGC	1 cut(s)	1951
PaeR7I	CTCGAG	2 cut(s)	616, 1857
PceI	AGGCCT	3 cut(s)	22, 717, 1662
PciI	ACATGT	2 cut(s)	1395, 1746
PctI	GAATGC	1 cut(s)	1025
PdmI	GAANNNNTTC	1 cut(s)	1025
PfeI	GAWTC	4 cut(s)	29, 606, 1613, 1979
PinAI	ACCGGT	1 cut(s)	1763
PleI	GAGTC	6 cut(s)	297, 565, 1252, 1369, 1381, 1849
PpsI	GAGTC	6 cut(s)	297, 565, 1252, 1369, 1381, 1849
PscI	ACATGT	2 cut(s)	1395, 1746
PshAI	GACNNNNGTC	2 cut(s)	288, 2034
PsiI	TTATAA	3 cut(s)	824, 1799, 1961
Psp6I	CCWGG	3 cut(s)	442, 1779, 1885
PspEI	GGTNACC	1 cut(s)	349
PspFI	CCCAGC	2 cut(s)	1604, 2193
PspGI	CCWGG	3 cut(s)	442, 1779, 1885
PspN4I	GGNNCC	6 cut(s)	918, 1447, 1652, 1864, 1918, 1996
PspPI	GGNCC	5 cut(s)	917, 926, 1573, 1650, 2052
PspXI	VCTCGAGB	2 cut(s)	616, 1857
PsuI	RGATCY	2 cut(s)	1862, 1882
PvuII	CAGCTG	1 cut(s)	988
RsaI	GTAC	7 cut(s)	120, 370, 448, 598, 772, 1262, 1316
RsaNI	GTAC	7 cut(s)	119, 369, 447, 597, 771, 1261, 1315
SacII	CCGCGG	1 cut(s)	1602
SaqAI	TTAA	1 cut(s)	437
Sau96I	GGNCC	5 cut(s)	917, 926, 1573, 1650, 2052
ScaI	AGTACT	1 cut(s)	772
SchI	GAGTC	6 cut(s)	298, 565, 1253, 1370, 1381, 1849
ScrFI	CCNGG	3 cut(s)	444, 1781, 1887
SduI	GDGCHC	1 cut(s)	2172
SexAI	ACCWGGT	1 cut(s)	1779
SfaNI	GCATC	6 cut(s)	269, 1052, 1181, 1960, 1996, 2235
SfcI	CTRYAG	2 cut(s)	519, 1003
Sfr274I	CTCGAG	2 cut(s)	616, 1857
Sfr303I	CCGCGG	1 cut(s)	1602
SfuI	TTCGAA	3 cut(s)	166, 1019, 1196
SgrBI	CCGCGG	1 cut(s)	1602
SinI	GGWCC	3 cut(s)	917, 926, 2052
SlaI	CTCGAG	2 cut(s)	616, 1857
SmlI	CTYRAG	9 cut(s)	270, 573, 616, 1420, 1463, 1850, 1857, 1999, 2129
SmoI	CTYRAG	9 cut(s)	270, 573, 616, 1420, 1463, 1850, 1857, 1999, 2129
SpeI	ACTAGT	3 cut(s)	773, 872, 887
SphI	GCATGC	1 cut(s)	1951
SseBI	AGGCCT	3 cut(s)	22, 717, 1662
SspI	AATATT	1 cut(s)	1522
SspMI	CTAG	6 cut(s)	24, 554, 774, 873, 888, 1773
StuI	AGGCCT	3 cut(s)	22, 717, 1662
StyD4I	CCNGG	3 cut(s)	442, 1779, 1885
StyI	CCWWGG	3 cut(s)	454, 1551, 1866
TaaI	ACNGT	3 cut(s)	1099, 1193, 1417
TaiI	ACGT	2 cut(s)	1037, 1644
TatI	WGTACW	3 cut(s)	596, 770, 1314
TauI	GCSGC	4 cut(s)	57, 1601, 1604, 2256
TfiI	GAWTC	4 cut(s)	29, 606, 1613, 1979
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TscAI	CASTG	4 cut(s)	940, 1078, 1216, 1683
TseFI	GTSAC	3 cut(s)	281, 514, 2266
TseI	GCWGC	9 cut(s)	1115, 1223, 1226, 2197, 2200, 2203, 2206, 2209, 2212
Tsp45I	GTSAC	3 cut(s)	281, 514, 2266
TspDTI	ATGAA	4 cut(s)	555, 824, 1215, 2145
TspGWI	ACGGA	3 cut(s)	1081, 1126, 1745
TspRI	CASTG	4 cut(s)	940, 1078, 1216, 1683
VpaK11BI	GGWCC	3 cut(s)	917, 926, 2052
XapI	RAATTY	3 cut(s)	433, 1132, 1900
XbaI	TCTAGA	1 cut(s)	1772
XceI	RCATGY	5 cut(s)	1294, 1399, 1750, 1849, 1951
XhoI	CTCGAG	2 cut(s)	616, 1857
XmiI	GTMKAC	1 cut(s)	2028
XmnI	GAANNNNTTC	1 cut(s)	1025
XspI	CTAG	6 cut(s)	24, 554, 774, 873, 888, 1773
ZrmI	AGTACT	1 cut(s)	772
Zsp2I	ATGCAT	2 cut(s)	256, 1953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.