FvH4_3g32720
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016803
Physical Location & Seq
Forward (+)
28038816 .. 28040690
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32720.t1

Sequence Viewer

Length: 1041 bp
ATGGAAATGGAACCAGTCTTTAGTGCTTCACCCAATTTCCAATTACCTCCTGGTTTCAGATTTCATCCATCTGATGAAGAACTCATTGTTCACTATCTACAAAGAAAAGTCACTTCGCGGCCGCTTCCAGCACACTTGATCACAGAAATCGATCTCTATAAGTATAATCCATGGGAGCTACCAAAGATGGCTTTGTTTGGGGAGGATGAATGGTACTTCTTCAGCCCGAGAGAAAGGAAGTATCCGAATGGGGAGAGACCTAATAGAGCAGCAGCTTCTGGTTATTGGAAGGCTGCTGGAAGTGACAAGCCAATTCTCACCACTTGTGGAATATCGAAGCGCATAGGAGTAAAGAAGGCTTTGGTCTTTTACACTGGTCGAGCTCCAACAGGATCTAAAACTGAATGGATCATGATCGAGTATAGACTTCTCGACAGTTCAATCAAACCCTCGAAATCAAAAGGGTCTATGAAATTGGATGATTGGGTACTATGCCGGGTTCAACAGAAAGGAAACACATCAAAGAACAAATGTAACAGTCAAGGTTCTAGCCCTGAATATTGGAGTGGCCTACAGAAAGTTGAGCAGACACAGCATACATATGCCAACCCTAATACTGAGATGATCACTGATTTCCTCTACAAGGACTGTACACTATTAGCTTCCATCCTTGCTGGTCAAGCTCCACCTATTTCAAGTGTGAGCTTCCAACGGACCAACAATGGCTATGAAGCTGGTCCTAACTATAAGGTAAATTCAACGATATCCATTTCTTCTCCGGGACTTATTTCTGAGACGCTAAAAAGGAAAAGTACAGAAGAAATCACAAAGAAAAATCCCTTTCGAATCGACAACAATCTAGCCAGCAAGAGCAACAACGAGGATCTTCTTCCCAGCAAGAGAATGGAAGAAAACTATATCAGCAGCTACAATCACAGCCACTCTCAAAATGATATAGTCAAAGCTAATCCAATAGATACCACTGACTATGAAGAACTCAATGAAATGGCCATTCTTGGTAGATATTTTTCAGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

347

Amino Acids

39.32

Weight (kDa)

8.44

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 143 3.1e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016803)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32720
malus_domestica MD03G1115100.v1.1 MD11G1133000.v1.1
prunus_persica Prupe.6G098600_v2.0.a1
pyrus_communis pycom11g10980
rosa_chinensis RchiOBHm_Chr5g0059781
rosa_laevigata RLG00000035329
rosa_multiflora Rmu_sc0000660.1_g000020
rosa_roxburghii Rroxscaffold_1G00020790
rosa_samantha Rh5AG390500 Rh5BG402000 Rh5CG426000 Rh5DG418400
rosa_wichuraiana Rw5G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 118
AciI CCGC 2 cut(s) 118, 122
AclWI GGATC 3 cut(s) 400, 416, 891
AcoI YGGCCR 2 cut(s) 119, 1008
AcsI RAATTY 2 cut(s) 754, 1035
AcuI CTGAAG 1 cut(s) 205
AfaI GTAC 4 cut(s) 215, 489, 652, 814
AfiI CCNNNNNNNGG 1 cut(s) 643
AgsI TTSAA 4 cut(s) 441, 503, 696, 759
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 9 cut(s) 178, 275, 383, 662, 683, 705, 734, 927, 965
AluI AGCT 9 cut(s) 178, 275, 383, 662, 683, 705, 734, 927, 965
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 2 cut(s) 250, 788
AlwI GGATC 3 cut(s) 400, 416, 891
AlwNI CAGNNNCTG 1 cut(s) 278
Ama87I CYCGRG 1 cut(s) 226
AoxI GGCC 3 cut(s) 119, 568, 1008
ApeKI GCWGC 4 cut(s) 269, 272, 293, 924
ApoI RAATTY 2 cut(s) 754, 1035
AspLEI GCGC 1 cut(s) 342
AspS9I GGNCC 2 cut(s) 714, 737
AsuC2I CCSGG 2 cut(s) 497, 780
AsuHPI GGTGA 2 cut(s) 21, 310
AsuII TTCGAA 1 cut(s) 844
AvaI CYCGRG 1 cut(s) 226
AvaII GGWCC 2 cut(s) 714, 737
BalI TGGCCA 1 cut(s) 1010
BanII GRGCYC 1 cut(s) 385
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 4 cut(s) 280, 281, 284, 936
BccI CCATC 3 cut(s) 76, 181, 674
BciT130I CCWGG 1 cut(s) 51
BciVI GTATCC 1 cut(s) 252
BclI TGATCA 2 cut(s) 138, 624
BcnI CCSGG 2 cut(s) 497, 780
BcoDI GTCTC 2 cut(s) 250, 788
BfaI CTAG 2 cut(s) 549, 860
BfmI CTRYAG 1 cut(s) 572
BfuI GTATCC 1 cut(s) 252
BisI GCNGC 6 cut(s) 119, 122, 270, 273, 294, 925
BlsI GCNGC 6 cut(s) 120, 123, 271, 274, 295, 926
Bme1390I CCNGG 3 cut(s) 51, 497, 780
Bme18I GGWCC 2 cut(s) 714, 737
BmeT110I CYCGRG 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 714, 737
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 3 cut(s) 51, 497, 780
Bpu14I TTCGAA 1 cut(s) 844
BpuMI CCSGG 2 cut(s) 497, 780
Bsa29I ATCGAT 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 250
BsaJI CCNNGG 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 643
Bse1I ACTGG 2 cut(s) 14, 379
Bse8I GATNNNNATC 1 cut(s) 413
BseBI CCWGG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 4 cut(s) 64, 211, 484, 666
BseJI GATNNNNATC 1 cut(s) 413
BseLI CCNNNNNNNGG 1 cut(s) 643
BseMII CTCAG 2 cut(s) 609, 783
BseNI ACTGG 2 cut(s) 14, 379
BseX3I CGGCCG 1 cut(s) 119
BseXI GCAGC 4 cut(s) 280, 281, 284, 936
BseYI CCCAGC 1 cut(s) 893
Bsh1236I CGCG 1 cut(s) 118
Bsh1285I CGRYCG 1 cut(s) 122
BshFI GGCC 3 cut(s) 121, 570, 1010
BshVI ATCGAT 1 cut(s) 150
BsiEI CGRYCG 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 385
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 2 cut(s) 496, 779
BslFI GGGAC 1 cut(s) 795
BslI CCNNNNNNNGG 1 cut(s) 643
BsmAI GTCTC 2 cut(s) 250, 788
BsmBI CGTCTC 1 cut(s) 788
BsmFI GGGAC 1 cut(s) 795
BsnI GGCC 3 cut(s) 121, 570, 1010
Bso31I GGTCTC 1 cut(s) 250
BsoBI CYCGRG 1 cut(s) 226
Bsp119I TTCGAA 1 cut(s) 844
Bsp1286I GDGCHC 1 cut(s) 385
Bsp1407I TGTACA 1 cut(s) 650
Bsp143I GATC 7 cut(s) 138, 151, 392, 408, 414, 624, 883
Bsp19I CCATGG 1 cut(s) 170
BspACI CCGC 2 cut(s) 118, 122
BspANI GGCC 3 cut(s) 121, 570, 1010
BspCNI CTCAG 2 cut(s) 610, 784
BspDI ATCGAT 1 cut(s) 150
BspFNI CGCG 1 cut(s) 118
BspHI TCATGA 1 cut(s) 411
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 3 cut(s) 400, 416, 891
BspT104I TTCGAA 1 cut(s) 844
BspTNI GGTCTC 1 cut(s) 250
BsrGI TGTACA 1 cut(s) 650
BsrI ACTGG 2 cut(s) 14, 379
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 7 cut(s) 138, 151, 392, 408, 414, 624, 883
BssT1I CCWWGG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 3 cut(s) 437, 539, 650
BstAUI TGTACA 1 cut(s) 650
BstBI TTCGAA 1 cut(s) 844
BstC8I GCNNGC 1 cut(s) 865
BstDEI CTNAG 2 cut(s) 618, 792
BstDSI CCRYGG 1 cut(s) 170
BstENI CCTNNNNNAGG 1 cut(s) 641
BstF5I GGATG 4 cut(s) 64, 211, 484, 666
BstFNI CGCG 1 cut(s) 118
BstHHI GCGC 1 cut(s) 342
BstKTI GATC 7 cut(s) 141, 154, 395, 411, 417, 627, 886
BstMAI GTCTC 2 cut(s) 250, 788
BstMBI GATC 7 cut(s) 138, 151, 392, 408, 414, 624, 883
BstMCI CGRYCG 1 cut(s) 122
BstMWI GCNNNNNNNGC 2 cut(s) 592, 680
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 3 cut(s) 49, 495, 778
BstSFI CTRYAG 1 cut(s) 572
BstUI CGCG 1 cut(s) 118
BstV1I GCAGC 4 cut(s) 280, 281, 284, 936
BstX2I RGATCY 2 cut(s) 392, 883
BstYI RGATCY 2 cut(s) 392, 883
BstZI CGGCCG 1 cut(s) 119
Bsu15I ATCGAT 1 cut(s) 150
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 3 cut(s) 121, 570, 1010
BsuTUI ATCGAT 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 170
BtsCI GGATG 4 cut(s) 64, 211, 484, 666
BtsIMutI CAGTG 3 cut(s) 372, 627, 981
Cac8I GCNNGC 1 cut(s) 865
CaiI CAGNNNCTG 1 cut(s) 278
CciI TCATGA 1 cut(s) 411
CciNI GCGGCCGC 1 cut(s) 119
CfoI GCGC 1 cut(s) 342
Cfr13I GGNCC 2 cut(s) 714, 737
ClaI ATCGAT 1 cut(s) 150
CseI GACGC 1 cut(s) 805
Csp6I GTAC 4 cut(s) 214, 488, 651, 813
CviAII CATG 2 cut(s) 171, 412
CviQI GTAC 4 cut(s) 214, 488, 651, 813
DdeI CTNAG 2 cut(s) 618, 792
DpnI GATC 7 cut(s) 140, 153, 394, 410, 416, 626, 885
DpnII GATC 7 cut(s) 138, 151, 392, 408, 414, 624, 883
EaeI YGGCCR 2 cut(s) 119, 1008
EagI CGGCCG 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 383
EclXI CGGCCG 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 385
Eco31I GGTCTC 1 cut(s) 250
Eco32I GATATC 1 cut(s) 765
Eco47I GGWCC 2 cut(s) 714, 737
Eco52I CGGCCG 1 cut(s) 119
Eco53kI GAGCTC 1 cut(s) 383
Eco57I CTGAAG 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 383
EcoNI CCTNNNNNAGG 1 cut(s) 641
EcoRII CCWGG 1 cut(s) 49
EcoRV GATATC 1 cut(s) 765
EcoT14I CCWWGG 1 cut(s) 170
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 170
Esp3I CGTCTC 1 cut(s) 788
FaeI CATG 2 cut(s) 174, 415
FaqI GGGAC 1 cut(s) 795
FatI CATG 2 cut(s) 170, 411
FauNDI CATATG 1 cut(s) 601
FbaI TGATCA 2 cut(s) 138, 624
Fnu4HI GCNGC 6 cut(s) 119, 122, 270, 273, 294, 925
FokI GGATG 4 cut(s) 51, 218, 491, 653
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 6 cut(s) 119, 122, 270, 273, 294, 925
FspBI CTAG 2 cut(s) 549, 860
GlaI GCGC 1 cut(s) 341
GluI GCNGC 6 cut(s) 119, 122, 270, 273, 294, 925
GsaI CCCAGC 1 cut(s) 897
HaeIII GGCC 3 cut(s) 121, 570, 1010
HapII CCGG 2 cut(s) 496, 779
HgaI GACGC 1 cut(s) 805
HhaI GCGC 1 cut(s) 342
Hin1II CATG 2 cut(s) 174, 415
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HinfI GANTC 1 cut(s) 846
HpaII CCGG 2 cut(s) 496, 779
HphI GGTGA 2 cut(s) 21, 310
Hpy166II GTNNAC 2 cut(s) 91, 653
Hpy188I TCNGA 5 cut(s) 59, 73, 246, 793, 1033
Hpy188III TCNNGA 2 cut(s) 412, 431
Hpy8I GTNNAC 2 cut(s) 91, 653
HpyAV CCTTC 2 cut(s) 283, 349
HpyCH4III ACNGT 3 cut(s) 437, 539, 650
HpyF10VI GCNNNNNNNGC 2 cut(s) 592, 680
HpyF3I CTNAG 2 cut(s) 618, 792
Hsp92II CATG 2 cut(s) 174, 415
HspAI GCGC 1 cut(s) 340
Ksp22I TGATCA 2 cut(s) 138, 624
Kzo9I GATC 7 cut(s) 138, 151, 392, 408, 414, 624, 883
LmnI GCTCC 3 cut(s) 175, 388, 688
Lsp1109I GCAGC 4 cut(s) 280, 281, 284, 936
MaeI CTAG 2 cut(s) 549, 860
MaeIII GTNAC 3 cut(s) 109, 302, 533
MalI GATC 7 cut(s) 140, 153, 394, 410, 416, 626, 885
MboI GATC 7 cut(s) 138, 151, 392, 408, 414, 624, 883
MboII GAAGA 8 cut(s) 89, 211, 765, 830, 878, 881, 920, 1004
MflI RGATCY 2 cut(s) 392, 883
MhlI GDGCHC 1 cut(s) 385
MlsI TGGCCA 1 cut(s) 1010
MluCI AATT 6 cut(s) 34, 41, 312, 473, 754, 1035
MluNI TGGCCA 1 cut(s) 1010
MmeI TCCRAC 2 cut(s) 410, 733
MnlI CCTC 5 cut(s) 57, 196, 460, 647, 874
Mox20I TGGCCA 1 cut(s) 1010
MscI TGGCCA 1 cut(s) 1010
MslI CAYNNNNRTG 1 cut(s) 600
Msp20I TGGCCA 1 cut(s) 1010
MspI CCGG 2 cut(s) 496, 779
MspR9I CCNGG 3 cut(s) 51, 497, 780
MvaI CCWGG 1 cut(s) 51
MvnI CGCG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 592, 680
NciI CCSGG 2 cut(s) 497, 780
NcoI CCATGG 1 cut(s) 170
NdeI CATATG 1 cut(s) 601
NdeII GATC 7 cut(s) 138, 151, 392, 408, 414, 624, 883
NlaIII CATG 2 cut(s) 174, 415
NlaIV GGNNCC 1 cut(s) 12
NmuCI GTSAC 2 cut(s) 109, 302
NotI GCGGCCGC 1 cut(s) 119
NspV TTCGAA 1 cut(s) 844
PagI TCATGA 1 cut(s) 411
PfeI GAWTC 1 cut(s) 846
PfoI TCCNGGA 1 cut(s) 778
PkrI GCNGC 6 cut(s) 120, 123, 271, 274, 295, 926
Psp124BI GAGCTC 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 49
PspFI CCCAGC 1 cut(s) 893
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 2 cut(s) 714, 737
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 2 cut(s) 392, 883
RsaI GTAC 4 cut(s) 215, 489, 652, 814
RsaNI GTAC 4 cut(s) 214, 488, 651, 813
RseI CAYNNNNRTG 1 cut(s) 600
SacI GAGCTC 1 cut(s) 385
SatI GCNGC 6 cut(s) 119, 122, 270, 273, 294, 925
Sau3AI GATC 7 cut(s) 138, 151, 392, 408, 414, 624, 883
Sau96I GGNCC 2 cut(s) 714, 737
ScrFI CCNGG 3 cut(s) 51, 497, 780
SduI GDGCHC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 572
SfuI TTCGAA 1 cut(s) 844
SinI GGWCC 2 cut(s) 714, 737
SmiMI CAYNNNNRTG 1 cut(s) 600
Sse9I AATT 6 cut(s) 34, 41, 312, 473, 754, 1035
SsiI CCGC 2 cut(s) 118, 122
SspI AATATT 1 cut(s) 560
SspMI CTAG 2 cut(s) 549, 860
SstI GAGCTC 1 cut(s) 385
StyD4I CCNGG 3 cut(s) 49, 495, 778
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 3 cut(s) 437, 539, 650
TaqI TCGA 8 cut(s) 150, 335, 379, 417, 432, 452, 844, 849
TasI AATT 6 cut(s) 34, 41, 312, 473, 754, 1035
TatI WGTACW 2 cut(s) 650, 812
TauI GCSGC 2 cut(s) 121, 124
TfiI GAWTC 1 cut(s) 846
TscAI CASTG 3 cut(s) 379, 634, 988
TseFI GTSAC 2 cut(s) 109, 302
TseI GCWGC 4 cut(s) 269, 272, 293, 924
Tsp45I GTSAC 2 cut(s) 109, 302
TspDTI ATGAA 7 cut(s) 53, 90, 222, 485, 744, 1005, 1017
TspGWI ACGGA 1 cut(s) 727
TspRI CASTG 3 cut(s) 379, 634, 988
VpaK11BI GGWCC 2 cut(s) 714, 737
XagI CCTNNNNNAGG 1 cut(s) 641
XapI RAATTY 2 cut(s) 754, 1035
XcmI CCANNNNNNNNNTGG 2 cut(s) 47, 901
XspI CTAG 2 cut(s) 549, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.