Rh5CG426000
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016803
Physical Location & Seq
Forward (+)
58925247 .. 58940407
15161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG426000.1

Sequence Viewer

Length: 1203 bp
ATGGACTCAAGCCTGGGGCAATGTTTTGGAGCAACGAAGGGCTGGTGGACTGCTGAGGCACGAGTGTGGTGTGGTTTTGACCAGGCCTCTTCGGCACTCCTTAGCACGAGTAGCCAATCAAGATGGATAATGATCGTGGGGGAGATGTACTGGTTTCTGCTGCAGGTGGGTGCGAGGTCGAGGGAGGTGGTGGTGATGGATCAGATGGTTGATTTAGGGGTTTGTTTTTCCTCCGGCATCGAAATGGTGGTGATGGGACTAAGGCCATCGTTTGCGGTGGCATGGTTTAGGGATGAACTTGATCTCATCAGGAAAGAGGCGTTGGTTGGGATTGGCCCTGTTATGGAGATGGCTTTGTTTGGGGAAGATGAATGGTATTTCTTTAGCCCGAGGGAGAGGAAGTATCCCAACGGGGAGAGGCCTAATAGAGCAGCAGCTTCAGGTTACTGGAAAGCTGCTGGAAGTGACAAGCCAATTCTCACCTCTTGTGGAATATCGAAGCGCATAGGAGTCAAGAAGGCTTTGGTCTTTTACACTGGTCGAGCTCCAACAGGAATTAAAACTGAATGGATCATGGTCGAGTATAGACTGCTCGACAGTACAACTAAACCCTCAAGGTCAAAAGGGTCTATGAGGTTGGATGATTGGGTACTATGTCGGGTTCAACAGAAAGGAAACACATCAAAGAATACATGTAACAGTCAAGGCTCTAGCCCTGAATATTGGAGTTGCCTACAGAGAGTTGAGCAGACACAGCATGCATCTGCCGACCTTAATACTGAGATGACCAATGATTTCCTTTACAAAGACTGTACACTATTAGCTTCCATCCTTGCTGGTCAAGCTCCACCTATTTCAAGTGTTAGCTTCCAAAGGACCAACGATGGCTATGAAGTTGGTACTAATTATAAGGTAAACTCCACGATATCCATTTCTACTCCGGGGATTATTTCCGACACACTAAAAAGGAAAAGTACAGAAGAAATTATAAAAGAAAATCCCTTTCGACTCGACAATAATCTAGCAAGCAAGAACAGTGATGAGGATCTTCTTCCTAGCAAGAGACTGGAAGAAAACTATATCAACAGCTACAACCACAATCACTCTCAAAATAATATTCTCGAAGCTAATCCAATAGATACTACTGACTATGAAGAACTCAATGAAATGGCCATCCTTGGTAGGTACTTTGCAGGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

400

Amino Acids

44.92

Weight (kDa)

5.52

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 116 - 197 2.7e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016803)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32720
malus_domestica MD03G1115100.v1.1 MD11G1133000.v1.1
prunus_persica Prupe.6G098600_v2.0.a1
pyrus_communis pycom11g10980
rosa_chinensis RchiOBHm_Chr5g0059781
rosa_laevigata RLG00000035329
rosa_multiflora Rmu_sc0000660.1_g000020
rosa_roxburghii Rroxscaffold_1G00020790
rosa_samantha Rh5AG390500 Rh5BG402000 Rh5CG426000 Rh5DG418400
rosa_wichuraiana Rw5G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 909, 989
AarI CACCTGC 1 cut(s) 154
Acc36I ACCTGC 1 cut(s) 154
AciI CCGC 1 cut(s) 275
AclWI GGATC 3 cut(s) 207, 578, 1053
AcoI YGGCCR 1 cut(s) 1170
AcuI CTGAAG 1 cut(s) 423
AfaI GTAC 7 cut(s) 149, 601, 651, 814, 901, 976, 1187
AfiI CCNNNNNNNGG 1 cut(s) 343
AflIII ACRYGT 1 cut(s) 692
AgsI TTSAA 2 cut(s) 665, 858
AjnI CCWGG 2 cut(s) 12, 81
AjuI GAANNNNNNNTTGG 2 cut(s) 305, 337
AleI CACNNNNGTG 1 cut(s) 64
AluBI AGCT 8 cut(s) 437, 455, 545, 824, 845, 867, 1089, 1127
AluI AGCT 8 cut(s) 437, 455, 545, 824, 845, 867, 1089, 1127
Alw21I GWGCWC 1 cut(s) 547
Alw26I GTCTC 1 cut(s) 1057
AlwI GGATC 3 cut(s) 207, 578, 1053
Ama87I CYCGRG 1 cut(s) 388
AoxI GGCC 5 cut(s) 84, 263, 334, 419, 1170
ApeKI GCWGC 4 cut(s) 160, 431, 434, 455
AspLEI GCGC 1 cut(s) 504
AspS9I GGNCC 2 cut(s) 335, 876
AsuC2I CCSGG 1 cut(s) 942
AsuHPI GGTGA 3 cut(s) 205, 262, 472
AvaI CYCGRG 1 cut(s) 388
AvaII GGWCC 1 cut(s) 876
BalI TGGCCA 1 cut(s) 1172
BanII GRGCYC 1 cut(s) 547
BauI CACGAG 2 cut(s) 60, 106
Bbv12I GWGCWC 1 cut(s) 547
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 4 cut(s) 147, 442, 443, 446
BccI CCATC 9 cut(s) 117, 190, 199, 247, 274, 343, 836, 878, 1181
BciT130I CCWGG 2 cut(s) 14, 83
BciVI GTATCC 1 cut(s) 414
BcnI CCSGG 1 cut(s) 942
BcoDI GTCTC 1 cut(s) 1057
BfaI CTAG 3 cut(s) 711, 1022, 1056
BfmI CTRYAG 2 cut(s) 161, 734
BfuAI ACCTGC 1 cut(s) 154
BfuI GTATCC 1 cut(s) 414
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 4 cut(s) 161, 432, 435, 456
BlsI GCNGC 4 cut(s) 162, 433, 436, 457
Bme1390I CCNGG 3 cut(s) 14, 83, 942
Bme18I GGWCC 1 cut(s) 876
BmeT110I CYCGRG 1 cut(s) 388
BmgT120I GGNCC 2 cut(s) 335, 876
BmrFI CCNGG 3 cut(s) 14, 83, 942
BmsI GCATC 2 cut(s) 246, 770
Bpu10I CCTNAGC 2 cut(s) 54, 101
BpuEI CTTGAG 1 cut(s) 598
BpuMI CCSGG 1 cut(s) 942
BsaBI GATNNNNATC 2 cut(s) 131, 1044
BsaJI CCNNGG 4 cut(s) 13, 389, 941, 1177
BsaXI ACNNNNNCTCC 2 cut(s) 386, 416
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse1I ACTGG 4 cut(s) 155, 452, 541, 1071
Bse3DI GCAATG 1 cut(s) 26
Bse8I GATNNNNATC 2 cut(s) 131, 1044
BseBI CCWGG 2 cut(s) 14, 83
BseDI CCNNGG 4 cut(s) 13, 389, 941, 1177
BseGI GGATG 4 cut(s) 298, 646, 828, 1173
BseJI GATNNNNATC 2 cut(s) 131, 1044
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMI GCAATG 1 cut(s) 26
BseMII CTCAG 2 cut(s) 45, 771
BseNI ACTGG 4 cut(s) 155, 452, 541, 1071
BseXI GCAGC 4 cut(s) 147, 442, 443, 446
BshFI GGCC 5 cut(s) 86, 265, 336, 421, 1172
BsiHKAI GWGCWC 1 cut(s) 547
BsiHKCI CYCGRG 1 cut(s) 388
BsiSI CCGG 2 cut(s) 234, 941
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 1 cut(s) 1057
BsmFI GGGAC 1 cut(s) 270
BsnI GGCC 5 cut(s) 86, 265, 336, 421, 1172
BsoBI CYCGRG 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 547
Bsp1407I TGTACA 1 cut(s) 812
Bsp143I GATC 5 cut(s) 132, 199, 301, 570, 1045
BspACI CCGC 1 cut(s) 275
BspANI GGCC 5 cut(s) 86, 265, 336, 421, 1172
BspCNI CTCAG 2 cut(s) 46, 772
BspMAI CTGCAG 1 cut(s) 165
BspMI ACCTGC 1 cut(s) 154
BspPI GGATC 3 cut(s) 207, 578, 1053
BsrDI GCAATG 1 cut(s) 26
BsrGI TGTACA 1 cut(s) 812
BsrI ACTGG 4 cut(s) 155, 452, 541, 1071
BssECI CCNNGG 4 cut(s) 13, 389, 941, 1177
BssMI GATC 5 cut(s) 132, 199, 301, 570, 1045
BssSI CACGAG 2 cut(s) 60, 106
BssT1I CCWWGG 1 cut(s) 1177
Bst2BI CACGAG 2 cut(s) 60, 106
Bst2UI CCWGG 2 cut(s) 14, 83
Bst4CI ACNGT 4 cut(s) 599, 701, 812, 1037
Bst6I CTCTTC 1 cut(s) 94
BstAUI TGTACA 1 cut(s) 812
BstC8I GCNNGC 2 cut(s) 759, 1027
BstDEI CTNAG 4 cut(s) 54, 101, 260, 780
BstF5I GGATG 4 cut(s) 298, 646, 828, 1173
BstHHI GCGC 1 cut(s) 504
BstKTI GATC 5 cut(s) 135, 202, 304, 573, 1048
BstMAI GTCTC 1 cut(s) 1057
BstMBI GATC 5 cut(s) 132, 199, 301, 570, 1045
BstMWI GCNNNNNNNGC 4 cut(s) 92, 111, 754, 842
BstNI CCWGG 2 cut(s) 14, 83
BstNSI RCATGY 2 cut(s) 696, 761
BstSCI CCNGG 3 cut(s) 12, 81, 940
BstSFI CTRYAG 2 cut(s) 161, 734
BstV1I GCAGC 4 cut(s) 147, 442, 443, 446
BstX2I RGATCY 1 cut(s) 1045
BstYI RGATCY 1 cut(s) 1045
BsuI GTATCC 1 cut(s) 414
BsuRI GGCC 5 cut(s) 86, 265, 336, 421, 1172
BtsCI GGATG 4 cut(s) 298, 646, 828, 1173
BtsIMutI CAGTG 2 cut(s) 534, 1042
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 759, 1027
CfoI GCGC 1 cut(s) 504
Cfr13I GGNCC 2 cut(s) 335, 876
Csp6I GTAC 7 cut(s) 148, 600, 650, 813, 900, 975, 1186
CviAII CATG 4 cut(s) 282, 574, 693, 758
CviQI GTAC 7 cut(s) 148, 600, 650, 813, 900, 975, 1186
DdeI CTNAG 4 cut(s) 54, 101, 260, 780
DpnI GATC 5 cut(s) 134, 201, 303, 572, 1047
DpnII GATC 5 cut(s) 132, 199, 301, 570, 1045
EaeI YGGCCR 1 cut(s) 1170
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Ecl136II GAGCTC 1 cut(s) 545
Eco130I CCWWGG 1 cut(s) 1177
Eco147I AGGCCT 2 cut(s) 86, 421
Eco24I GRGCYC 1 cut(s) 547
Eco32I GATATC 1 cut(s) 927
Eco47I GGWCC 1 cut(s) 876
Eco53kI GAGCTC 1 cut(s) 545
Eco57I CTGAAG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 388
EcoICRI GAGCTC 1 cut(s) 545
EcoRII CCWGG 2 cut(s) 12, 81
EcoRV GATATC 1 cut(s) 927
EcoT14I CCWWGG 1 cut(s) 1177
EcoT22I ATGCAT 1 cut(s) 763
EcoT38I GRGCYC 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 1177
FaeI CATG 4 cut(s) 285, 577, 696, 761
FaqI GGGAC 1 cut(s) 270
FatI CATG 4 cut(s) 281, 573, 692, 757
Fnu4HI GCNGC 4 cut(s) 161, 432, 435, 456
FokI GGATG 4 cut(s) 305, 653, 815, 1160
FriOI GRGCYC 1 cut(s) 547
Fsp4HI GCNGC 4 cut(s) 161, 432, 435, 456
FspBI CTAG 3 cut(s) 711, 1022, 1056
GlaI GCGC 1 cut(s) 503
GluI GCNGC 4 cut(s) 161, 432, 435, 456
HaeIII GGCC 5 cut(s) 86, 265, 336, 421, 1172
HapII CCGG 2 cut(s) 234, 941
HhaI GCGC 1 cut(s) 504
Hin1II CATG 4 cut(s) 285, 577, 696, 761
Hin6I GCGC 1 cut(s) 502
HinP1I GCGC 1 cut(s) 502
HinfI GANTC 4 cut(s) 5, 510, 1008, 1197
HpaII CCGG 2 cut(s) 234, 941
HphI GGTGA 3 cut(s) 205, 262, 472
Hpy166II GTNNAC 3 cut(s) 48, 815, 916
Hpy188I TCNGA 3 cut(s) 204, 955, 1202
Hpy188III TCNNGA 4 cut(s) 120, 310, 514, 1121
Hpy8I GTNNAC 3 cut(s) 48, 815, 916
HpyAV CCTTC 2 cut(s) 31, 511
HpyCH4III ACNGT 4 cut(s) 599, 701, 812, 1037
HpyCH4V TGCA 3 cut(s) 163, 761, 1193
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 111, 754, 842
HpyF3I CTNAG 4 cut(s) 54, 101, 260, 780
Hsp92II CATG 4 cut(s) 285, 577, 696, 761
HspAI GCGC 1 cut(s) 502
Kzo9I GATC 5 cut(s) 132, 199, 301, 570, 1045
LmnI GCTCC 3 cut(s) 29, 550, 850
Lsp1109I GCAGC 4 cut(s) 147, 442, 443, 446
LweI GCATC 2 cut(s) 246, 770
MaeI CTAG 3 cut(s) 711, 1022, 1056
MaeIII GTNAC 3 cut(s) 443, 464, 695
MalI GATC 5 cut(s) 134, 201, 303, 572, 1047
MboI GATC 5 cut(s) 132, 199, 301, 570, 1045
MboII GAAGA 7 cut(s) 81, 377, 992, 1040, 1043, 1082, 1166
MflI RGATCY 1 cut(s) 1045
MhlI GDGCHC 1 cut(s) 547
MlsI TGGCCA 1 cut(s) 1172
MluCI AATT 4 cut(s) 474, 555, 904, 984
MluNI TGGCCA 1 cut(s) 1172
MlyI GAGTC 2 cut(s) 519, 1002
MmeI TCCRAC 3 cut(s) 572, 618, 978
Mox20I TGGCCA 1 cut(s) 1172
Mph1103I ATGCAT 1 cut(s) 763
MscI TGGCCA 1 cut(s) 1172
MseI TTAA 2 cut(s) 558, 774
MslI CAYNNNNRTG 2 cut(s) 64, 242
Msp20I TGGCCA 1 cut(s) 1172
MspI CCGG 2 cut(s) 234, 941
MspR9I CCNGG 3 cut(s) 14, 83, 942
MvaI CCWGG 2 cut(s) 14, 83
MwoI GCNNNNNNNGC 4 cut(s) 92, 111, 754, 842
NciI CCSGG 1 cut(s) 942
NdeII GATC 5 cut(s) 132, 199, 301, 570, 1045
NlaIII CATG 4 cut(s) 285, 577, 696, 761
NmuCI GTSAC 1 cut(s) 464
NsiI ATGCAT 1 cut(s) 763
NspI RCATGY 2 cut(s) 696, 761
OliI CACNNNNGTG 1 cut(s) 64
PaeI GCATGC 1 cut(s) 761
PaqCI CACCTGC 1 cut(s) 154
PceI AGGCCT 2 cut(s) 86, 421
PciI ACATGT 1 cut(s) 692
PfeI GAWTC 1 cut(s) 1197
PkrI GCNGC 4 cut(s) 162, 433, 436, 457
PleI GAGTC 2 cut(s) 518, 1002
PpsI GAGTC 2 cut(s) 518, 1002
PscI ACATGT 1 cut(s) 692
PsiI TTATAA 2 cut(s) 909, 989
Psp124BI GAGCTC 1 cut(s) 547
Psp6I CCWGG 2 cut(s) 12, 81
PspGI CCWGG 2 cut(s) 12, 81
PspPI GGNCC 2 cut(s) 335, 876
PstI CTGCAG 1 cut(s) 165
PsuI RGATCY 1 cut(s) 1045
RsaI GTAC 7 cut(s) 149, 601, 651, 814, 901, 976, 1187
RsaNI GTAC 7 cut(s) 148, 600, 650, 813, 900, 975, 1186
RseI CAYNNNNRTG 2 cut(s) 64, 242
SacI GAGCTC 1 cut(s) 547
SaqAI TTAA 2 cut(s) 558, 774
SatI GCNGC 4 cut(s) 161, 432, 435, 456
Sau3AI GATC 5 cut(s) 132, 199, 301, 570, 1045
Sau96I GGNCC 2 cut(s) 335, 876
SchI GAGTC 2 cut(s) 519, 1002
ScrFI CCNGG 3 cut(s) 14, 83, 942
SduI GDGCHC 1 cut(s) 547
SfaNI GCATC 2 cut(s) 246, 770
SfcI CTRYAG 2 cut(s) 161, 734
SinI GGWCC 1 cut(s) 876
SmiMI CAYNNNNRTG 2 cut(s) 64, 242
SmlI CTYRAG 2 cut(s) 7, 613
SmoI CTYRAG 2 cut(s) 7, 613
SphI GCATGC 1 cut(s) 761
Sse9I AATT 4 cut(s) 474, 555, 904, 984
SseBI AGGCCT 2 cut(s) 86, 421
SsiI CCGC 1 cut(s) 275
SspI AATATT 2 cut(s) 722, 1117
SspMI CTAG 3 cut(s) 711, 1022, 1056
SstI GAGCTC 1 cut(s) 547
StuI AGGCCT 2 cut(s) 86, 421
StyD4I CCNGG 3 cut(s) 12, 81, 940
StyI CCWWGG 1 cut(s) 1177
TaaI ACNGT 4 cut(s) 599, 701, 812, 1037
TaqI TCGA 9 cut(s) 179, 240, 497, 541, 579, 594, 1006, 1011, 1122
TasI AATT 4 cut(s) 474, 555, 904, 984
TatI WGTACW 4 cut(s) 147, 599, 812, 974
TfiI GAWTC 1 cut(s) 1197
Tru1I TTAA 2 cut(s) 558, 774
Tru9I TTAA 2 cut(s) 558, 774
TscAI CASTG 2 cut(s) 541, 1042
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 4 cut(s) 160, 431, 434, 455
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 5 cut(s) 309, 384, 906, 1167, 1179
TspRI CASTG 2 cut(s) 541, 1042
VpaK11BI GGWCC 1 cut(s) 876
XceI RCATGY 2 cut(s) 696, 761
XspI CTAG 3 cut(s) 711, 1022, 1056
Zsp2I ATGCAT 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.