Rw5G036730
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0016803
Physical Location & Seq
Forward (+)
64476406 .. 64478728
2323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G036730.1

Sequence Viewer

Length: 1041 bp
ATGGAGATAGAACCAACCTTTAGTGCTTCACCTAATTTCCAATTACCTCCTGGTTTCAGATTCCATCCATCTGATGAAGAACTCATTGTTCACTACCTGCAAAGAAAAGTCACTTCACGGCCACTTCCAGCACACTTGATCACAGAAATCGATCTCTATAAGTATAATCCATGGGAGCTACCTAAGATGGCTTTGTTTGGGGAAGATGAATGGTATTTCTTTAGCCCGAGGGAGAGGAAGTATCCCAACGGGGAGAGGCCTAATAGAGCAGCAGCTTCAGGTTACTGGAAAGCTGCTGGAAGTGACAAGCCAATTCTCACCTCTTGTGGAATATCGAAGCGCATAGGAGTCAAGAAGGCTTTGGTCTTTTACACTGGTCGAGCTCCAACAGGAATTAAAACTGAATGGATCATGGTCGAGTATAGACTGCTTGACAGTACAACTAAACCCTCAAGGTCAAAAGGGTCTATGAGGTTAGATGATTGGGTACTATGTCGGGTTCAACAGAAAGGAAACACATCAAAGAATACATGTAACAGTCAAGGCTCTAGCCCTGAATATTGGAGTTGCCTACAGAGAGTTGAGCAGACACAGCATGCATCTGCCGACCTTAATACTGAGATGACCAATGATTTCCTTTACAAAGACTGTACACTATTAGCTTCCATCCTTGCTGGTCAAGCTCCACCTATTTCAAGTGTTAGCTTCCAAAGGACCAACGATGGCTATGAAGTTGGTACTAATTATAAGGTAAACTCCACGATATCCATTTCTACTCCGGGGATTATTTCCGACACACTAAAAAGGAAAAGTACAGAAGAAATTATAAAAGAAAATCCCTTTCGACTCGACAACAATCTAGCAAGCAAGAACAGTGATGAGGATCTTCTTCCTAGCAAGAGACTGGAAGAAAACTATATCAACAGCTACAACCACAATCACTCTCAAAATAATATTCTCGAAGCTAATCCAATAGATACCACTGACTATGAAGAACTCAATGAAATGGCCATCCTTGGTAGGTACTTTGCAGGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

346

Amino Acids

39.33

Weight (kDa)

6.14

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 143 3.8e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016803)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32720
malus_domestica MD03G1115100.v1.1 MD11G1133000.v1.1
prunus_persica Prupe.6G098600_v2.0.a1
pyrus_communis pycom11g10980
rosa_chinensis RchiOBHm_Chr5g0059781
rosa_laevigata RLG00000035329
rosa_multiflora Rmu_sc0000660.1_g000020
rosa_roxburghii Rroxscaffold_1G00020790
rosa_samantha Rh5AG390500 Rh5BG402000 Rh5CG426000 Rh5DG418400
rosa_wichuraiana Rw5G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 747, 827
Acc36I ACCTGC 1 cut(s) 105
AclWI GGATC 2 cut(s) 416, 891
AcoI YGGCCR 2 cut(s) 119, 1008
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 6 cut(s) 439, 489, 652, 739, 814, 1025
AflIII ACRYGT 1 cut(s) 530
AgsI TTSAA 2 cut(s) 503, 696
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 9 cut(s) 178, 275, 293, 383, 662, 683, 705, 927, 965
AluI AGCT 9 cut(s) 178, 275, 293, 383, 662, 683, 705, 927, 965
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 1 cut(s) 895
AlwI GGATC 2 cut(s) 416, 891
Ama87I CYCGRG 1 cut(s) 226
AoxI GGCC 3 cut(s) 119, 257, 1008
ApeKI GCWGC 3 cut(s) 269, 272, 293
AspLEI GCGC 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 714
AsuC2I CCSGG 1 cut(s) 780
AsuHPI GGTGA 2 cut(s) 21, 310
AvaI CYCGRG 1 cut(s) 226
AvaII GGWCC 1 cut(s) 714
BalI TGGCCA 1 cut(s) 1010
BanII GRGCYC 1 cut(s) 385
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 3 cut(s) 280, 281, 284
BccI CCATC 6 cut(s) 72, 76, 181, 674, 716, 1019
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 51
BciVI GTATCC 1 cut(s) 252
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 1 cut(s) 780
BcoDI GTCTC 1 cut(s) 895
BfaI CTAG 3 cut(s) 549, 860, 894
BfmI CTRYAG 1 cut(s) 572
BfuAI ACCTGC 1 cut(s) 105
BfuI GTATCC 1 cut(s) 252
BisI GCNGC 3 cut(s) 270, 273, 294
BlsI GCNGC 3 cut(s) 271, 274, 295
Bme1390I CCNGG 2 cut(s) 51, 780
Bme18I GGWCC 1 cut(s) 714
BmeT110I CYCGRG 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 714
BmrFI CCNGG 2 cut(s) 51, 780
BmsI GCATC 1 cut(s) 608
BpuEI CTTGAG 1 cut(s) 436
BpuMI CCSGG 1 cut(s) 780
Bsa29I ATCGAT 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 882
BsaJI CCNNGG 4 cut(s) 170, 227, 779, 1015
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bse1I ACTGG 3 cut(s) 290, 379, 909
Bse8I GATNNNNATC 1 cut(s) 882
BseBI CCWGG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 4 cut(s) 170, 227, 779, 1015
BseGI GGATG 3 cut(s) 64, 666, 1011
BseJI GATNNNNATC 1 cut(s) 882
BseMII CTCAG 1 cut(s) 609
BseNI ACTGG 3 cut(s) 290, 379, 909
BseXI GCAGC 3 cut(s) 280, 281, 284
BshFI GGCC 3 cut(s) 121, 259, 1010
BshVI ATCGAT 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 385
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 1 cut(s) 779
BsmAI GTCTC 1 cut(s) 895
BsnI GGCC 3 cut(s) 121, 259, 1010
BsoBI CYCGRG 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 385
Bsp1407I TGTACA 1 cut(s) 650
Bsp143I GATC 4 cut(s) 138, 151, 408, 883
Bsp19I CCATGG 1 cut(s) 170
BspANI GGCC 3 cut(s) 121, 259, 1010
BspCNI CTCAG 1 cut(s) 610
BspDI ATCGAT 1 cut(s) 150
BspMI ACCTGC 1 cut(s) 105
BspPI GGATC 2 cut(s) 416, 891
BsrGI TGTACA 1 cut(s) 650
BsrI ACTGG 3 cut(s) 290, 379, 909
BssECI CCNNGG 4 cut(s) 170, 227, 779, 1015
BssMI GATC 4 cut(s) 138, 151, 408, 883
BssT1I CCWWGG 2 cut(s) 170, 1015
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 4 cut(s) 437, 539, 650, 875
BstAUI TGTACA 1 cut(s) 650
BstC8I GCNNGC 2 cut(s) 597, 865
BstDEI CTNAG 2 cut(s) 183, 618
BstDSI CCRYGG 1 cut(s) 170
BstF5I GGATG 3 cut(s) 64, 666, 1011
BstHHI GCGC 1 cut(s) 342
BstKTI GATC 4 cut(s) 141, 154, 411, 886
BstMAI GTCTC 1 cut(s) 895
BstMBI GATC 4 cut(s) 138, 151, 408, 883
BstMWI GCNNNNNNNGC 2 cut(s) 592, 680
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 2 cut(s) 534, 599
BstSCI CCNGG 2 cut(s) 49, 778
BstSFI CTRYAG 1 cut(s) 572
BstV1I GCAGC 3 cut(s) 280, 281, 284
BstX2I RGATCY 1 cut(s) 883
BstYI RGATCY 1 cut(s) 883
Bsu15I ATCGAT 1 cut(s) 150
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 3 cut(s) 121, 259, 1010
BsuTUI ATCGAT 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 170
BtsCI GGATG 3 cut(s) 64, 666, 1011
BtsIMutI CAGTG 3 cut(s) 372, 880, 981
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 597, 865
CfoI GCGC 1 cut(s) 342
Cfr13I GGNCC 1 cut(s) 714
ClaI ATCGAT 1 cut(s) 150
Csp6I GTAC 6 cut(s) 438, 488, 651, 738, 813, 1024
CviAII CATG 4 cut(s) 171, 412, 531, 596
CviQI GTAC 6 cut(s) 438, 488, 651, 738, 813, 1024
DdeI CTNAG 2 cut(s) 183, 618
DpnI GATC 4 cut(s) 140, 153, 410, 885
DpnII GATC 4 cut(s) 138, 151, 408, 883
EaeI YGGCCR 2 cut(s) 119, 1008
Ecl136II GAGCTC 1 cut(s) 383
Eco130I CCWWGG 2 cut(s) 170, 1015
Eco147I AGGCCT 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 385
Eco32I GATATC 1 cut(s) 765
Eco47I GGWCC 1 cut(s) 714
Eco53kI GAGCTC 1 cut(s) 383
Eco57I CTGAAG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 49
EcoRV GATATC 1 cut(s) 765
EcoT14I CCWWGG 2 cut(s) 170, 1015
EcoT22I ATGCAT 1 cut(s) 601
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 2 cut(s) 170, 1015
FaeI CATG 4 cut(s) 174, 415, 534, 599
FatI CATG 4 cut(s) 170, 411, 530, 595
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 270, 273, 294
FokI GGATG 3 cut(s) 51, 653, 998
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 3 cut(s) 270, 273, 294
FspBI CTAG 3 cut(s) 549, 860, 894
GlaI GCGC 1 cut(s) 341
GluI GCNGC 3 cut(s) 270, 273, 294
HaeIII GGCC 3 cut(s) 121, 259, 1010
HapII CCGG 1 cut(s) 779
HhaI GCGC 1 cut(s) 342
Hin1II CATG 4 cut(s) 174, 415, 534, 599
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HinfI GANTC 4 cut(s) 60, 348, 846, 1035
HpaII CCGG 1 cut(s) 779
HphI GGTGA 2 cut(s) 21, 310
Hpy166II GTNNAC 3 cut(s) 91, 653, 754
Hpy188I TCNGA 4 cut(s) 59, 73, 793, 1040
Hpy188III TCNNGA 2 cut(s) 352, 959
Hpy8I GTNNAC 3 cut(s) 91, 653, 754
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 4 cut(s) 437, 539, 650, 875
HpyCH4V TGCA 3 cut(s) 100, 599, 1031
HpyF10VI GCNNNNNNNGC 2 cut(s) 592, 680
HpyF3I CTNAG 2 cut(s) 183, 618
Hsp92II CATG 4 cut(s) 174, 415, 534, 599
HspAI GCGC 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 4 cut(s) 138, 151, 408, 883
LmnI GCTCC 3 cut(s) 175, 388, 688
Lsp1109I GCAGC 3 cut(s) 280, 281, 284
LweI GCATC 1 cut(s) 608
MaeI CTAG 3 cut(s) 549, 860, 894
MaeIII GTNAC 4 cut(s) 109, 281, 302, 533
MalI GATC 4 cut(s) 140, 153, 410, 885
MboI GATC 4 cut(s) 138, 151, 408, 883
MboII GAAGA 7 cut(s) 89, 215, 830, 878, 881, 920, 1004
MflI RGATCY 1 cut(s) 883
MhlI GDGCHC 1 cut(s) 385
MlsI TGGCCA 1 cut(s) 1010
MluCI AATT 6 cut(s) 34, 41, 312, 393, 742, 822
MluNI TGGCCA 1 cut(s) 1010
MlyI GAGTC 2 cut(s) 357, 840
MmeI TCCRAC 2 cut(s) 410, 816
MnlI CCTC 8 cut(s) 57, 222, 228, 249, 331, 460, 465, 874
Mox20I TGGCCA 1 cut(s) 1010
Mph1103I ATGCAT 1 cut(s) 601
MscI TGGCCA 1 cut(s) 1010
MseI TTAA 2 cut(s) 396, 612
Msp20I TGGCCA 1 cut(s) 1010
MspI CCGG 1 cut(s) 779
MspR9I CCNGG 2 cut(s) 51, 780
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 2 cut(s) 592, 680
NciI CCSGG 1 cut(s) 780
NcoI CCATGG 1 cut(s) 170
NdeII GATC 4 cut(s) 138, 151, 408, 883
NlaIII CATG 4 cut(s) 174, 415, 534, 599
NmuCI GTSAC 2 cut(s) 109, 302
NsiI ATGCAT 1 cut(s) 601
NspI RCATGY 2 cut(s) 534, 599
PaeI GCATGC 1 cut(s) 599
PceI AGGCCT 1 cut(s) 259
PciI ACATGT 1 cut(s) 530
PfeI GAWTC 2 cut(s) 60, 1035
PkrI GCNGC 3 cut(s) 271, 274, 295
PleI GAGTC 2 cut(s) 356, 840
PpsI GAGTC 2 cut(s) 356, 840
PscI ACATGT 1 cut(s) 530
PsiI TTATAA 2 cut(s) 747, 827
Psp124BI GAGCTC 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspPI GGNCC 1 cut(s) 714
PsuI RGATCY 1 cut(s) 883
RsaI GTAC 6 cut(s) 439, 489, 652, 739, 814, 1025
RsaNI GTAC 6 cut(s) 438, 488, 651, 738, 813, 1024
SacI GAGCTC 1 cut(s) 385
SaqAI TTAA 2 cut(s) 396, 612
SatI GCNGC 3 cut(s) 270, 273, 294
Sau3AI GATC 4 cut(s) 138, 151, 408, 883
Sau96I GGNCC 1 cut(s) 714
SchI GAGTC 2 cut(s) 357, 840
ScrFI CCNGG 2 cut(s) 51, 780
SduI GDGCHC 1 cut(s) 385
SfaNI GCATC 1 cut(s) 608
SfcI CTRYAG 1 cut(s) 572
SinI GGWCC 1 cut(s) 714
SmlI CTYRAG 1 cut(s) 451
SmoI CTYRAG 1 cut(s) 451
SphI GCATGC 1 cut(s) 599
Sse9I AATT 6 cut(s) 34, 41, 312, 393, 742, 822
SseBI AGGCCT 1 cut(s) 259
SspI AATATT 2 cut(s) 560, 955
SspMI CTAG 3 cut(s) 549, 860, 894
SstI GAGCTC 1 cut(s) 385
StuI AGGCCT 1 cut(s) 259
StyD4I CCNGG 2 cut(s) 49, 778
StyI CCWWGG 2 cut(s) 170, 1015
TaaI ACNGT 4 cut(s) 437, 539, 650, 875
TaqI TCGA 7 cut(s) 150, 335, 379, 417, 844, 849, 960
TasI AATT 6 cut(s) 34, 41, 312, 393, 742, 822
TatI WGTACW 3 cut(s) 437, 650, 812
TfiI GAWTC 2 cut(s) 60, 1035
Tru1I TTAA 2 cut(s) 396, 612
Tru9I TTAA 2 cut(s) 396, 612
TscAI CASTG 3 cut(s) 379, 880, 988
TseFI GTSAC 2 cut(s) 109, 302
TseI GCWGC 3 cut(s) 269, 272, 293
Tsp45I GTSAC 2 cut(s) 109, 302
TspDTI ATGAA 5 cut(s) 90, 222, 744, 1005, 1017
TspRI CASTG 3 cut(s) 379, 880, 988
VpaK11BI GGWCC 1 cut(s) 714
XceI RCATGY 2 cut(s) 534, 599
XcmI CCANNNNNNNNNTGG 1 cut(s) 47
XspI CTAG 3 cut(s) 549, 860, 894
Zsp2I ATGCAT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.