MD03G1115100.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0016803
Physical Location & Seq
Forward (+)
10054600 .. 10056380
1781 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1115100.v1.1.491

Sequence Viewer

Length: 1161 bp
ATGCACATATATACTGCCTCTCAGACCATTTCATTTTCCATCTACAACTGTTTTAGATTGATATTATCGTTGCTTCTTATTGTATTCCCTCGTCGTCCAAGGAAAAACTGCGCTTTCATGGAGAAAGAACCCACATTCACGACTTATTCAACTATGCAATTGCCTCCGGGTTTCAGATTCCATCCATCAGATGAAGAACTCATCGTTCACTACTTGCGAAACAAAATGATTTCGCATCCACTTCCAGCTCAGTTGATCACGGAGATCGATCTGTATAAGTATAATCCGTGGGAGCTACCCAACAAGGCTTTGTTTGGAGAAGATGAATGGTACTTCTTCAGCCCGAGGGACCGGAAGTATCCGAATGGGGAGAGGCCTAATAGAACAGCAGCTTTGGGTTATTGGAAGGCTGCTGGAAGTGACAAGCCAATTCTCACCTCTTGTGGATCAAAGCGGATAGGAGTGAAGAAGGCTTTGGTCTTTTACACCGGTCGAGCTCCTAAAGGAGTTAAGACTGAATGGATCATGAACGAGTATAGACTGCTCGACTGTACGGTTAATCCCTCGAGATCCAAAGGTTCTATGAGATTGGATGATTGGGTACTATGCCGAGTTCAACAGCGAGGAAACACAACAAAGAACACATGTAACGCTCAAGACATCTACAACACTGAATTTTGGAGGTGCCTACCAAAATCTGGGCCAACAGTACGGCCTACAAGTCCAATCCATCGTGCTGATATAATCACAGATTTTCTATACAAAGACTGTCGAGAATTACCTTCCATCCTCGCCGGTCAACCTCCATCACCGATAGAGACCTCAAGTGCGAGCTTTCAAGGGAGCAAAGATAGCTATCCAGTCGGCTCAAATAATAAGGTAAAATCCACAGTATCAATTTCTTCTTCGGGCATTAATTCCACACTAAAAAGGAAGATTAGAGAAGAAAATACAAAAGAAAATCTCTTTCCACTCATAAATCTAGAAAGCAAGAACAAAGATGGGAACGTTCTGCTTAGCAAGAAACTAGCAGCTGGTAATGTTGTCAACTGCTACATTCCAAACCACTTGCAAAATGACATACCCAAAGCAAATCCAACTGTTCCAGCCAACTTTGAGGAGTTTAATGAAATGGGCTTCCTCGCTACATACTCCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

387

Amino Acids

43.9

Weight (kDa)

9.33

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 55 - 181 3.6e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016803)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32720
malus_domestica MD03G1115100.v1.1 MD11G1133000.v1.1
prunus_persica Prupe.6G098600_v2.0.a1
pyrus_communis pycom11g10980
rosa_chinensis RchiOBHm_Chr5g0059781
rosa_laevigata RLG00000035329
rosa_multiflora Rmu_sc0000660.1_g000020
rosa_roxburghii Rroxscaffold_1G00020790
rosa_samantha Rh5AG390500 Rh5BG402000 Rh5CG426000 Rh5DG418400
rosa_wichuraiana Rw5G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 684
AccB7I CCANNNNNTGG 1 cut(s) 698
AciI CCGC 1 cut(s) 454
AclI AACGTT 1 cut(s) 1008
AclWI GGATC 3 cut(s) 454, 530, 564
AcsI RAATTY 1 cut(s) 674
AcuI CTGAAG 1 cut(s) 322
AfaI GTAC 4 cut(s) 332, 553, 603, 711
AfiI CCNNNNNNNGG 1 cut(s) 698
AflIII ACRYGT 1 cut(s) 644
AgeI ACCGGT 1 cut(s) 488
AgsI TTSAA 3 cut(s) 150, 617, 839
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AluBI AGCT 7 cut(s) 248, 295, 392, 497, 834, 855, 1034
AluI AGCT 7 cut(s) 248, 295, 392, 497, 834, 855, 1034
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 1 cut(s) 812
AlwI GGATC 3 cut(s) 454, 530, 564
Ama87I CYCGRG 2 cut(s) 343, 565
AoxI GGCC 3 cut(s) 374, 701, 713
ApeKI GCWGC 3 cut(s) 389, 410, 1031
ApoI RAATTY 1 cut(s) 674
AseI ATTAAT 1 cut(s) 915
AsiGI ACCGGT 1 cut(s) 488
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 349, 701
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 2 cut(s) 427, 801
AvaI CYCGRG 2 cut(s) 343, 565
AvaII GGWCC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 684
BanII GRGCYC 1 cut(s) 499
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 3 cut(s) 397, 401, 1043
BccI CCATC 7 cut(s) 47, 189, 193, 738, 794, 814, 995
BceAI ACGGC 1 cut(s) 728
BciVI GTATCC 1 cut(s) 369
BclI TGATCA 1 cut(s) 255
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 812
BfaI CTAG 2 cut(s) 983, 1028
BfuI GTATCC 1 cut(s) 369
BisI GCNGC 3 cut(s) 390, 411, 1032
BlpI GCTNAGC 1 cut(s) 1016
BlsI GCNGC 3 cut(s) 391, 412, 1033
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 349
BmeT110I CYCGRG 2 cut(s) 343, 565
BmgT120I GGNCC 2 cut(s) 349, 701
BmiI GGNNCC 2 cut(s) 350, 686
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 244
Bpu1102I GCTNAGC 1 cut(s) 1016
BpuEI CTTGAG 2 cut(s) 639, 808
BpuMI CCSGG 1 cut(s) 168
Bsa29I ATCGAT 1 cut(s) 267
BsaBI GATNNNNATC 1 cut(s) 855
BsaI GGTCTC 1 cut(s) 812
BsaJI CCNNGG 3 cut(s) 98, 287, 344
BsaWI WCCGGW 2 cut(s) 351, 488
Bsc4I CCNNNNNNNGG 1 cut(s) 698
Bse118I RCCGGY 2 cut(s) 488, 794
Bse1I ACTGG 1 cut(s) 860
Bse8I GATNNNNATC 1 cut(s) 855
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 3 cut(s) 98, 287, 344
BseGI GGATG 4 cut(s) 181, 235, 598, 786
BseJI GATNNNNATC 1 cut(s) 855
BseLI CCNNNNNNNGG 1 cut(s) 698
BseMII CTCAG 2 cut(s) 35, 263
BseNI ACTGG 1 cut(s) 860
BseRI GAGGAG 2 cut(s) 1133, 1144
BseXI GCAGC 3 cut(s) 397, 401, 1043
Bsh1285I CGRYCG 1 cut(s) 493
BshFI GGCC 3 cut(s) 376, 703, 715
BshNI GGYRCC 1 cut(s) 684
BshTI ACCGGT 1 cut(s) 488
BshVI ATCGAT 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 493
BsiHKAI GWGCWC 1 cut(s) 499
BsiHKCI CYCGRG 2 cut(s) 343, 565
BsiSI CCGG 4 cut(s) 167, 352, 489, 795
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 698
BsmAI GTCTC 1 cut(s) 812
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 3 cut(s) 376, 703, 715
Bso31I GGTCTC 1 cut(s) 812
BsoBI CYCGRG 2 cut(s) 343, 565
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 6 cut(s) 255, 264, 268, 446, 522, 569
Bsp1720I GCTNAGC 1 cut(s) 1016
BspACI CCGC 1 cut(s) 454
BspANI GGCC 3 cut(s) 376, 703, 715
BspCNI CTCAG 2 cut(s) 34, 262
BspDI ATCGAT 1 cut(s) 267
BspHI TCATGA 1 cut(s) 525
BspLI GGNNCC 2 cut(s) 350, 686
BspPI GGATC 3 cut(s) 454, 530, 564
BspT107I GGYRCC 1 cut(s) 684
BspTNI GGTCTC 1 cut(s) 812
BsrFI RCCGGY 2 cut(s) 488, 794
BsrI ACTGG 1 cut(s) 860
BssAI RCCGGY 2 cut(s) 488, 794
BssECI CCNNGG 3 cut(s) 98, 287, 344
BssMI GATC 6 cut(s) 255, 264, 268, 446, 522, 569
BssT1I CCWWGG 1 cut(s) 98
Bst4CI ACNGT 7 cut(s) 50, 551, 556, 709, 770, 892, 1102
BstC8I GCNNGC 1 cut(s) 832
BstDEI CTNAG 3 cut(s) 21, 249, 1016
BstDSI CCRYGG 1 cut(s) 287
BstF5I GGATG 4 cut(s) 181, 235, 598, 786
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 6 cut(s) 258, 267, 271, 449, 525, 572
BstMAI GTCTC 1 cut(s) 812
BstMBI GATC 6 cut(s) 255, 264, 268, 446, 522, 569
BstMCI CGRYCG 1 cut(s) 493
BstMWI GCNNNNNNNGC 1 cut(s) 852
BstNSI RCATGY 1 cut(s) 648
BstSCI CCNGG 1 cut(s) 166
BstV1I GCAGC 3 cut(s) 397, 401, 1043
BstX2I RGATCY 1 cut(s) 569
BstYI RGATCY 1 cut(s) 569
Bsu15I ATCGAT 1 cut(s) 267
BsuI GTATCC 1 cut(s) 369
BsuRI GGCC 3 cut(s) 376, 703, 715
BsuTUI ATCGAT 1 cut(s) 267
BtgI CCRYGG 1 cut(s) 287
BtsCI GGATG 4 cut(s) 181, 235, 598, 786
BtsIMutI CAGTG 1 cut(s) 669
Cac8I GCNNGC 1 cut(s) 832
CciI TCATGA 1 cut(s) 525
CfoI GCGC 1 cut(s) 113
Cfr10I RCCGGY 2 cut(s) 488, 794
Cfr13I GGNCC 2 cut(s) 349, 701
ClaI ATCGAT 1 cut(s) 267
Csp6I GTAC 4 cut(s) 331, 552, 602, 710
CspAI ACCGGT 1 cut(s) 488
CviAII CATG 3 cut(s) 118, 526, 645
CviQI GTAC 4 cut(s) 331, 552, 602, 710
DdeI CTNAG 3 cut(s) 21, 249, 1016
DpnI GATC 6 cut(s) 257, 266, 270, 448, 524, 571
DpnII GATC 6 cut(s) 255, 264, 268, 446, 522, 569
Ecl136II GAGCTC 1 cut(s) 497
Eco130I CCWWGG 1 cut(s) 98
Eco147I AGGCCT 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 499
Eco31I GGTCTC 1 cut(s) 812
Eco47I GGWCC 1 cut(s) 349
Eco53kI GAGCTC 1 cut(s) 497
Eco57I CTGAAG 1 cut(s) 322
Eco88I CYCGRG 2 cut(s) 343, 565
EcoICRI GAGCTC 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 3 cut(s) 121, 529, 648
FaqI GGGAC 1 cut(s) 362
FatI CATG 3 cut(s) 117, 525, 644
FbaI TGATCA 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 390, 411, 1032
FokI GGATG 4 cut(s) 168, 222, 605, 773
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 3 cut(s) 390, 411, 1032
FspBI CTAG 2 cut(s) 983, 1028
GlaI GCGC 1 cut(s) 112
GluI GCNGC 3 cut(s) 390, 411, 1032
HaeIII GGCC 3 cut(s) 376, 703, 715
HapII CCGG 4 cut(s) 167, 352, 489, 795
HhaI GCGC 1 cut(s) 113
Hin1II CATG 3 cut(s) 121, 529, 648
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HincII GTYRAC 2 cut(s) 800, 1048
HindII GTYRAC 2 cut(s) 800, 1048
HinfI GANTC 1 cut(s) 177
HpaII CCGG 4 cut(s) 167, 352, 489, 795
HphI GGTGA 2 cut(s) 427, 801
Hpy166II GTNNAC 3 cut(s) 208, 800, 1048
Hpy188I TCNGA 4 cut(s) 24, 176, 190, 363
Hpy188III TCNNGA 6 cut(s) 139, 526, 567, 656, 773, 983
Hpy8I GTNNAC 3 cut(s) 208, 800, 1048
Hpy99I CGWCG 1 cut(s) 96
HpyAV CCTTC 3 cut(s) 400, 463, 792
HpyCH4III ACNGT 7 cut(s) 50, 551, 556, 709, 770, 892, 1102
HpyCH4IV ACGT 1 cut(s) 1008
HpyCH4V TGCA 3 cut(s) 4, 157, 1072
HpyF10VI GCNNNNNNNGC 1 cut(s) 852
HpyF3I CTNAG 3 cut(s) 21, 249, 1016
HpySE526I ACGT 1 cut(s) 1008
Hsp92II CATG 3 cut(s) 121, 529, 648
HspAI GCGC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 255
Kzo9I GATC 6 cut(s) 255, 264, 268, 446, 522, 569
LmnI GCTCC 3 cut(s) 292, 502, 843
Lsp1109I GCAGC 3 cut(s) 397, 401, 1043
LweI GCATC 1 cut(s) 244
MaeI CTAG 2 cut(s) 983, 1028
MaeII ACGT 1 cut(s) 1008
MaeIII GTNAC 2 cut(s) 419, 647
MalI GATC 6 cut(s) 257, 266, 270, 448, 524, 571
MboI GATC 6 cut(s) 255, 264, 268, 446, 522, 569
MboII GAAGA 8 cut(s) 206, 328, 332, 478, 894, 897, 946, 956
MfeI CAATTG 1 cut(s) 158
MflI RGATCY 1 cut(s) 569
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 6 cut(s) 158, 429, 674, 776, 897, 916
MmeI TCCRAC 1 cut(s) 1121
MseI TTAA 4 cut(s) 510, 558, 915, 1125
MspA1I CMGCKG 1 cut(s) 1034
MspI CCGG 4 cut(s) 167, 352, 489, 795
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 852
NciI CCSGG 1 cut(s) 168
NdeII GATC 6 cut(s) 255, 264, 268, 446, 522, 569
NlaIII CATG 3 cut(s) 121, 529, 648
NlaIV GGNNCC 2 cut(s) 350, 686
NmeAIII GCCGAG 1 cut(s) 635
NmuCI GTSAC 1 cut(s) 419
NspI RCATGY 1 cut(s) 648
PaeR7I CTCGAG 1 cut(s) 565
PagI TCATGA 1 cut(s) 525
PceI AGGCCT 1 cut(s) 376
PciI ACATGT 1 cut(s) 644
PfeI GAWTC 1 cut(s) 177
PflMI CCANNNNNTGG 1 cut(s) 698
PinAI ACCGGT 1 cut(s) 488
PkrI GCNGC 3 cut(s) 391, 412, 1033
PscI ACATGT 1 cut(s) 644
PshBI ATTAAT 1 cut(s) 915
Psp124BI GAGCTC 1 cut(s) 499
Psp1406I AACGTT 1 cut(s) 1008
PspN4I GGNNCC 2 cut(s) 350, 686
PspPI GGNCC 2 cut(s) 349, 701
PsuI RGATCY 1 cut(s) 569
PvuII CAGCTG 1 cut(s) 1034
RsaI GTAC 4 cut(s) 332, 553, 603, 711
RsaNI GTAC 4 cut(s) 331, 552, 602, 710
SacI GAGCTC 1 cut(s) 499
SaqAI TTAA 4 cut(s) 510, 558, 915, 1125
SatI GCNGC 3 cut(s) 390, 411, 1032
Sau3AI GATC 6 cut(s) 255, 264, 268, 446, 522, 569
Sau96I GGNCC 2 cut(s) 349, 701
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 499
SfaNI GCATC 1 cut(s) 244
Sfr274I CTCGAG 1 cut(s) 565
SinI GGWCC 1 cut(s) 349
SlaI CTCGAG 1 cut(s) 565
SmlI CTYRAG 3 cut(s) 565, 654, 823
SmoI CTYRAG 3 cut(s) 565, 654, 823
Sse9I AATT 6 cut(s) 158, 429, 674, 776, 897, 916
SseBI AGGCCT 1 cut(s) 376
SsiI CCGC 1 cut(s) 454
SspMI CTAG 2 cut(s) 983, 1028
SstI GAGCTC 1 cut(s) 499
StuI AGGCCT 1 cut(s) 376
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 7 cut(s) 50, 551, 556, 709, 770, 892, 1102
TaiI ACGT 1 cut(s) 1011
TaqI TCGA 5 cut(s) 267, 493, 546, 566, 772
TasI AATT 6 cut(s) 158, 429, 674, 776, 897, 916
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 4 cut(s) 510, 558, 915, 1125
Tru9I TTAA 4 cut(s) 510, 558, 915, 1125
TscAI CASTG 1 cut(s) 676
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 3 cut(s) 389, 410, 1031
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 6 cut(s) 21, 106, 207, 339, 542, 1143
TspGWI ACGGA 2 cut(s) 275, 276
TspRI CASTG 1 cut(s) 676
Van91I CCANNNNNTGG 1 cut(s) 698
VpaK11BI GGWCC 1 cut(s) 349
VspI ATTAAT 1 cut(s) 915
XapI RAATTY 1 cut(s) 674
XbaI TCTAGA 1 cut(s) 982
XceI RCATGY 1 cut(s) 648
XhoI CTCGAG 1 cut(s) 565
XspI CTAG 2 cut(s) 983, 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.