Rh5BG402000
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0016803
Physical Location & Seq
Forward (+)
65228129 .. 65233548
5420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG402000.1

Sequence Viewer

Length: 705 bp
ATGGTCAACGTGAGCACTTCGAAGGTTCGTTTTGTGGTGGTTATTGGTGGTGCAGGCCATCGTTTGCGGTGGCATGGTTTAGGGATGAACTTGATCTCATCAGGAAAGAGGCGTTGGTTGGGATTGGCCCTGTTATGGTTGGATGATTGGGTACTATGTCGGGTTCAACAGAAAGGAAACACATCAAAGAATACATGTAACAGTCAAGGCTCTAGCCCTGAATATTGGAGTTGCCTACAGAGAGTTGAGCAGACACAGCATGCATCTGCCGACCTTAATACTGAGATGACCAATGATTTCCTTTACAAAGACTGTACACTATTAGCTTCCATCCTTGCTGGTCAAGCTCCACCTATTTCAAGTGTTAGCTTCCAAAGGACCAACGATGGCTATGAAGTTGGTACTAATTATAAGGTAAACTCCACGATATCCATTTCTACTCCGGGGATTATTTCCGACACACTAAAAAGGAAAAGTACAGAAGAAATTATAAAAGAAAATCCCTTTCGACTCGACAATAATCTAGCAAGCAAGAACAGTGATGAGGATCTTCTTCCTAGCAAGAGACTGGAAGAAAACTATATCAACAGCTACAACCACAATCACTCTCAAAATAATATTCTCGAAGCTAATCCAATAGATACTACTGACTATGAAGAACTCAATGAAATGGCCATCCTTGGTAGGTACTTTGCAGGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

234

Amino Acids

26.28

Weight (kDa)

5.97

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016803)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32720
malus_domestica MD03G1115100.v1.1 MD11G1133000.v1.1
prunus_persica Prupe.6G098600_v2.0.a1
pyrus_communis pycom11g10980
rosa_chinensis RchiOBHm_Chr5g0059781
rosa_laevigata RLG00000035329
rosa_multiflora Rmu_sc0000660.1_g000020
rosa_roxburghii Rroxscaffold_1G00020790
rosa_samantha Rh5AG390500 Rh5BG402000 Rh5CG426000 Rh5DG418400
rosa_wichuraiana Rw5G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 411, 491
AciI CCGC 1 cut(s) 67
AclWI GGATC 1 cut(s) 555
AcoI YGGCCR 1 cut(s) 672
AfaI GTAC 5 cut(s) 153, 316, 403, 478, 689
AfiI CCNNNNNNNGG 1 cut(s) 135
AflIII ACRYGT 1 cut(s) 194
AgsI TTSAA 2 cut(s) 167, 360
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AluBI AGCT 5 cut(s) 326, 347, 369, 591, 629
AluI AGCT 5 cut(s) 326, 347, 369, 591, 629
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 559
AlwI GGATC 1 cut(s) 555
AoxI GGCC 3 cut(s) 55, 126, 672
AspS9I GGNCC 2 cut(s) 127, 378
AsuC2I CCSGG 1 cut(s) 444
AsuII TTCGAA 1 cut(s) 20
AvaII GGWCC 1 cut(s) 378
BalI TGGCCA 1 cut(s) 674
Bbv12I GWGCWC 1 cut(s) 17
BccI CCATC 4 cut(s) 66, 338, 380, 683
BcnI CCSGG 1 cut(s) 444
BcoDI GTCTC 1 cut(s) 559
BfaI CTAG 3 cut(s) 213, 524, 558
BfmI CTRYAG 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 1 cut(s) 378
BmgT120I GGNCC 2 cut(s) 127, 378
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 20
BpuMI CCSGG 1 cut(s) 444
BsaBI GATNNNNATC 1 cut(s) 546
BsaJI CCNNGG 2 cut(s) 443, 679
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 573
Bse8I GATNNNNATC 1 cut(s) 546
BseDI CCNNGG 2 cut(s) 443, 679
BseGI GGATG 4 cut(s) 90, 148, 330, 675
BseJI GATNNNNATC 1 cut(s) 546
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 573
BsgI GTGCAG 1 cut(s) 72
BshFI GGCC 3 cut(s) 57, 128, 674
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 1 cut(s) 443
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 559
BsnI GGCC 3 cut(s) 57, 128, 674
Bsp119I TTCGAA 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 17
Bsp1407I TGTACA 1 cut(s) 314
Bsp143I GATC 2 cut(s) 93, 547
BspACI CCGC 1 cut(s) 67
BspANI GGCC 3 cut(s) 57, 128, 674
BspCNI CTCAG 1 cut(s) 274
BspPI GGATC 1 cut(s) 555
BspT104I TTCGAA 1 cut(s) 20
BsrGI TGTACA 1 cut(s) 314
BsrI ACTGG 1 cut(s) 573
BssECI CCNNGG 2 cut(s) 443, 679
BssMI GATC 2 cut(s) 93, 547
BssT1I CCWWGG 1 cut(s) 679
Bst4CI ACNGT 3 cut(s) 203, 314, 539
BstAUI TGTACA 1 cut(s) 314
BstBI TTCGAA 1 cut(s) 20
BstC8I GCNNGC 3 cut(s) 55, 261, 529
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 4 cut(s) 90, 148, 330, 675
BstKTI GATC 2 cut(s) 96, 550
BstMAI GTCTC 1 cut(s) 559
BstMBI GATC 2 cut(s) 93, 547
BstMWI GCNNNNNNNGC 2 cut(s) 256, 344
BstNSI RCATGY 2 cut(s) 198, 263
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 1 cut(s) 236
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
BsuRI GGCC 3 cut(s) 57, 128, 674
BtsCI GGATG 4 cut(s) 90, 148, 330, 675
BtsIMutI CAGTG 1 cut(s) 544
Cac8I GCNNGC 3 cut(s) 55, 261, 529
Cfr13I GGNCC 2 cut(s) 127, 378
Csp6I GTAC 5 cut(s) 152, 315, 402, 477, 688
CviAII CATG 3 cut(s) 74, 195, 260
CviQI GTAC 5 cut(s) 152, 315, 402, 477, 688
DdeI CTNAG 1 cut(s) 282
DpnI GATC 2 cut(s) 95, 549
DpnII GATC 2 cut(s) 93, 547
EaeI YGGCCR 1 cut(s) 672
Eco130I CCWWGG 1 cut(s) 679
Eco32I GATATC 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 378
EcoRV GATATC 1 cut(s) 429
EcoT14I CCWWGG 1 cut(s) 679
EcoT22I ATGCAT 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 679
FaeI CATG 3 cut(s) 77, 198, 263
FatI CATG 3 cut(s) 73, 194, 259
FokI GGATG 4 cut(s) 97, 155, 317, 662
FspBI CTAG 3 cut(s) 213, 524, 558
HaeIII GGCC 3 cut(s) 57, 128, 674
HapII CCGG 1 cut(s) 443
Hin1II CATG 3 cut(s) 77, 198, 263
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 2 cut(s) 510, 699
HpaII CCGG 1 cut(s) 443
Hpy166II GTNNAC 3 cut(s) 7, 317, 418
Hpy188I TCNGA 2 cut(s) 457, 704
Hpy188III TCNNGA 2 cut(s) 102, 623
Hpy8I GTNNAC 3 cut(s) 7, 317, 418
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 3 cut(s) 203, 314, 539
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 3 cut(s) 53, 263, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 256, 344
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 3 cut(s) 77, 198, 263
Kzo9I GATC 2 cut(s) 93, 547
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 8 cut(s) 39, 87, 143, 231, 324, 456, 554, 681
LweI GCATC 1 cut(s) 272
MaeI CTAG 3 cut(s) 213, 524, 558
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 197
MalI GATC 2 cut(s) 95, 549
MboI GATC 2 cut(s) 93, 547
MboII GAAGA 5 cut(s) 494, 542, 545, 584, 668
MflI RGATCY 1 cut(s) 547
MhlI GDGCHC 1 cut(s) 17
MlsI TGGCCA 1 cut(s) 674
MluCI AATT 2 cut(s) 406, 486
MluNI TGGCCA 1 cut(s) 674
MlyI GAGTC 1 cut(s) 504
MmeI TCCRAC 2 cut(s) 120, 480
MnlI CCTC 2 cut(s) 102, 538
Mox20I TGGCCA 1 cut(s) 674
Mph1103I ATGCAT 1 cut(s) 265
MscI TGGCCA 1 cut(s) 674
MseI TTAA 1 cut(s) 276
Msp20I TGGCCA 1 cut(s) 674
MspI CCGG 1 cut(s) 443
MspR9I CCNGG 1 cut(s) 444
MwoI GCNNNNNNNGC 2 cut(s) 256, 344
NciI CCSGG 1 cut(s) 444
NdeII GATC 2 cut(s) 93, 547
NlaIII CATG 3 cut(s) 77, 198, 263
NsiI ATGCAT 1 cut(s) 265
NspI RCATGY 2 cut(s) 198, 263
NspV TTCGAA 1 cut(s) 20
PaeI GCATGC 1 cut(s) 263
PciI ACATGT 1 cut(s) 194
PfeI GAWTC 1 cut(s) 699
PleI GAGTC 1 cut(s) 504
PpsI GAGTC 1 cut(s) 504
PscI ACATGT 1 cut(s) 194
PsiI TTATAA 2 cut(s) 411, 491
PspPI GGNCC 2 cut(s) 127, 378
PsuI RGATCY 1 cut(s) 547
RsaI GTAC 5 cut(s) 153, 316, 403, 478, 689
RsaNI GTAC 5 cut(s) 152, 315, 402, 477, 688
SaqAI TTAA 1 cut(s) 276
Sau3AI GATC 2 cut(s) 93, 547
Sau96I GGNCC 2 cut(s) 127, 378
SchI GAGTC 1 cut(s) 504
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 1 cut(s) 17
SfaNI GCATC 1 cut(s) 272
SfcI CTRYAG 1 cut(s) 236
SfuI TTCGAA 1 cut(s) 20
SinI GGWCC 1 cut(s) 378
SphI GCATGC 1 cut(s) 263
Sse9I AATT 2 cut(s) 406, 486
SsiI CCGC 1 cut(s) 67
SspI AATATT 2 cut(s) 224, 619
SspMI CTAG 3 cut(s) 213, 524, 558
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 1 cut(s) 679
TaaI ACNGT 3 cut(s) 203, 314, 539
TaiI ACGT 1 cut(s) 12
TaqI TCGA 4 cut(s) 20, 508, 513, 624
TasI AATT 2 cut(s) 406, 486
TatI WGTACW 2 cut(s) 314, 476
TfiI GAWTC 1 cut(s) 699
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 1 cut(s) 544
TspDTI ATGAA 4 cut(s) 101, 408, 669, 681
TspRI CASTG 1 cut(s) 544
VpaK11BI GGWCC 1 cut(s) 378
XceI RCATGY 2 cut(s) 198, 263
XspI CTAG 3 cut(s) 213, 524, 558
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.