MD11G1133000.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016803
Physical Location & Seq
Reverse (-)
12162474 .. 12164153
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1133000.v1.1.491

Sequence Viewer

Length: 1041 bp
ATGGAGAAAGAACCCGCATTCACGACTTCTTCAACTCTGCAATTGCCTCCTGGTTTCAGATTCCATCCATCAGACGAAGAACTCATTGTTCATTACTTGCGAAACAAAATGATTTCGTATCCTCTTCCAGCGCAGTTGATCACGGAGATCGATCTGTATAAGTATAATCCGTGGGATCTACCCAACAAGGCTTTGTTTGGAGAAGATGAGTGGTACTTTTTCAGCCCGAGGGACCGGAAGTATCCGAATGGGGATAGGCCTAATAGAGCAGCAGCTTTGGGTTATTGGAAGGCTGCTGGAGGTGACAAGCCAATTCTCACTTCTTGTGGATCGGAGCTGATAGGAGTGAAGAAGGCTTTAGTCTTTTACACAGGTCGAGCTCCAAAGGGAGTTAAGACTGAGTGGCTCATGAACGAGTATAGACTGCTCGACAGTACGATTAACCCCTCAAGGTCAAAAGGTTCTATGAGATTGGATGATTGGGTACTATGTCGAGTTCAACAGCGAGGAAACACAACAAAGAACACATGCAACGCTCAAGACATCTACAACACTGAATCTTGGAGGTGCCTACCAAAAGCTGGGCCGACACAGCCTACAGATCCAATCCATCGTGCTGATTTAATCACAGATTTTCTATACAAAGACTGTCGACTATTAGCTTTCATGCTCGCCGGTCCAGCTCCATCACCGATAGAGACCAATTCAAGTGCGAGCTTTCAAGGGAGCAAAGATAACTGTGAAGTCGGTTCAAATAATAAGGTAAAATCCACAATATCAATTTCTTCTTCGGGCATTAGTTCCACCCTAAAAAGGAAGATTAGAGAAGAAAATACAAAAGAAAGTCTCTTTCCACTGATAAATCTAGAAAGCAAGAACAAATATGGGAATGTTCTGCCTAGCAAGAGACTAGCAGCTGGCAATGTTGTCAACTGCTACATACCAAACGACTTGCAAAATGACATACCTAAAGCAAATCCAATGGTTCCTGCCAACTTTGAGGAGTTTAATGAAATGTCCTTCCTAGCTACGTACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

347

Amino Acids

39.0

Weight (kDa)

8.68

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 142 4.3e-47 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016803)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32720
malus_domestica MD03G1115100.v1.1 MD11G1133000.v1.1
prunus_persica Prupe.6G098600_v2.0.a1
pyrus_communis pycom11g10980
rosa_chinensis RchiOBHm_Chr5g0059781
rosa_laevigata RLG00000035329
rosa_multiflora Rmu_sc0000660.1_g000020
rosa_roxburghii Rroxscaffold_1G00020790
rosa_samantha Rh5AG390500 Rh5BG402000 Rh5CG426000 Rh5DG418400
rosa_wichuraiana Rw5G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 567
AccB7I CCANNNNNTGG 1 cut(s) 581
AccI GTMKAC 1 cut(s) 652
AciI CCGC 1 cut(s) 15
AclWI GGATC 3 cut(s) 183, 337, 596
AfaI GTAC 4 cut(s) 215, 436, 486, 1034
AfiI CCNNNNNNNGG 2 cut(s) 581, 813
AgsI TTSAA 5 cut(s) 33, 500, 708, 722, 753
AjnI CCWGG 1 cut(s) 49
AjuI GAANNNNNNNTTGG 2 cut(s) 304, 336
AluBI AGCT 9 cut(s) 275, 337, 380, 581, 662, 683, 717, 917, 1028
AluI AGCT 9 cut(s) 275, 337, 380, 581, 662, 683, 717, 917, 1028
Alw21I GWGCWC 1 cut(s) 382
Alw26I GTCTC 3 cut(s) 692, 851, 901
AlwI GGATC 3 cut(s) 183, 337, 596
Ama87I CYCGRG 1 cut(s) 226
AoxI GGCC 2 cut(s) 257, 584
ApeKI GCWGC 4 cut(s) 269, 272, 293, 914
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 3 cut(s) 232, 584, 677
AsuHPI GGTGA 2 cut(s) 314, 681
AvaI CYCGRG 1 cut(s) 226
AvaII GGWCC 2 cut(s) 232, 677
BanI GGYRCC 1 cut(s) 567
BanII GRGCYC 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 382
BbvI GCAGC 4 cut(s) 280, 281, 284, 926
BccI CCATC 4 cut(s) 72, 76, 618, 694
BciT130I CCWGG 1 cut(s) 51
BciVI GTATCC 2 cut(s) 129, 252
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 3 cut(s) 692, 851, 901
BfaI CTAG 5 cut(s) 866, 900, 911, 1025, 1039
BfmI CTRYAG 1 cut(s) 597
BfuI GTATCC 2 cut(s) 129, 252
BisI GCNGC 4 cut(s) 270, 273, 294, 915
BlsI GCNGC 4 cut(s) 271, 274, 295, 916
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 2 cut(s) 232, 677
BmeT110I CYCGRG 1 cut(s) 226
BmgT120I GGNCC 3 cut(s) 232, 584, 677
BmiI GGNNCC 3 cut(s) 233, 569, 987
BmrFI CCNGG 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 318
BpuEI CTTGAG 2 cut(s) 433, 522
Bsa29I ATCGAT 1 cut(s) 150
BsaAI YACGTR 1 cut(s) 1032
BsaI GGTCTC 1 cut(s) 692
BsaJI CCNNGG 2 cut(s) 170, 227
BsaWI WCCGGW 1 cut(s) 234
Bsc4I CCNNNNNNNGG 2 cut(s) 581, 813
Bse118I RCCGGY 1 cut(s) 674
Bse3DI GCAATG 1 cut(s) 928
BseBI CCWGG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 170, 227
BseGI GGATG 2 cut(s) 64, 481
BseLI CCNNNNNNNGG 2 cut(s) 581, 813
BseMI GCAATG 1 cut(s) 928
BseMII CTCAG 1 cut(s) 390
BseRI GAGGAG 1 cut(s) 1016
BseXI GCAGC 4 cut(s) 280, 281, 284, 926
BseYI CCCAGC 1 cut(s) 581
BshFI GGCC 2 cut(s) 259, 586
BshNI GGYRCC 1 cut(s) 567
BshVI ATCGAT 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 382
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 2 cut(s) 235, 675
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 581, 813
BsmAI GTCTC 3 cut(s) 692, 851, 901
BsmFI GGGAC 1 cut(s) 245
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 2 cut(s) 259, 586
Bso31I GGTCTC 1 cut(s) 692
BsoBI CYCGRG 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 382
Bsp143I GATC 6 cut(s) 138, 147, 151, 175, 329, 601
BspACI CCGC 1 cut(s) 15
BspANI GGCC 2 cut(s) 259, 586
BspCNI CTCAG 1 cut(s) 391
BspDI ATCGAT 1 cut(s) 150
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 3 cut(s) 233, 569, 987
BspPI GGATC 3 cut(s) 183, 337, 596
BspT107I GGYRCC 1 cut(s) 567
BspTNI GGTCTC 1 cut(s) 692
BsrDI GCAATG 1 cut(s) 928
BsrFI RCCGGY 1 cut(s) 674
BssAI RCCGGY 1 cut(s) 674
BssECI CCNNGG 2 cut(s) 170, 227
BssMI GATC 6 cut(s) 138, 147, 151, 175, 329, 601
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 3 cut(s) 434, 650, 740
Bst6I CTCTTC 1 cut(s) 129
BstBAI YACGTR 1 cut(s) 1032
BstC8I GCNNGC 3 cut(s) 672, 715, 919
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 1 cut(s) 170
BstF5I GGATG 2 cut(s) 64, 481
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 6 cut(s) 141, 150, 154, 178, 332, 604
BstMAI GTCTC 3 cut(s) 692, 851, 901
BstMBI GATC 6 cut(s) 138, 147, 151, 175, 329, 601
BstMWI GCNNNNNNNGC 2 cut(s) 592, 680
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 1 cut(s) 531
BstSCI CCNGG 1 cut(s) 49
BstSFI CTRYAG 1 cut(s) 597
BstSNI TACGTA 1 cut(s) 1032
BstV1I GCAGC 4 cut(s) 280, 281, 284, 926
BstX2I RGATCY 2 cut(s) 175, 601
BstYI RGATCY 2 cut(s) 175, 601
Bsu15I ATCGAT 1 cut(s) 150
BsuI GTATCC 2 cut(s) 129, 252
BsuRI GGCC 2 cut(s) 259, 586
BsuTUI ATCGAT 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 170
BtsCI GGATG 2 cut(s) 64, 481
BtsIMutI CAGTG 2 cut(s) 552, 854
Cac8I GCNNGC 3 cut(s) 672, 715, 919
CciI TCATGA 1 cut(s) 408
CfoI GCGC 1 cut(s) 133
Cfr10I RCCGGY 1 cut(s) 674
Cfr13I GGNCC 3 cut(s) 232, 584, 677
ClaI ATCGAT 1 cut(s) 150
Csp6I GTAC 4 cut(s) 214, 435, 485, 1033
CviAII CATG 3 cut(s) 409, 528, 667
CviQI GTAC 4 cut(s) 214, 435, 485, 1033
DdeI CTNAG 1 cut(s) 399
DpnI GATC 6 cut(s) 140, 149, 153, 177, 331, 603
DpnII GATC 6 cut(s) 138, 147, 151, 175, 329, 601
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 380
Eco105I TACGTA 1 cut(s) 1032
Eco147I AGGCCT 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 382
Eco31I GGTCTC 1 cut(s) 692
Eco47I GGWCC 2 cut(s) 232, 677
Eco53kI GAGCTC 1 cut(s) 380
Eco88I CYCGRG 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 49
EcoT38I GRGCYC 1 cut(s) 382
FaeI CATG 3 cut(s) 412, 531, 670
FaqI GGGAC 1 cut(s) 245
FatI CATG 3 cut(s) 408, 527, 666
FauI CCCGC 1 cut(s) 22
FbaI TGATCA 1 cut(s) 138
FblI GTMKAC 1 cut(s) 652
Fnu4HI GCNGC 4 cut(s) 270, 273, 294, 915
FokI GGATG 2 cut(s) 51, 488
FriOI GRGCYC 1 cut(s) 382
Fsp4HI GCNGC 4 cut(s) 270, 273, 294, 915
FspBI CTAG 5 cut(s) 866, 900, 911, 1025, 1039
GlaI GCGC 1 cut(s) 132
GluI GCNGC 4 cut(s) 270, 273, 294, 915
GsaI CCCAGC 1 cut(s) 585
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 2 cut(s) 259, 586
HapII CCGG 2 cut(s) 235, 675
HhaI GCGC 1 cut(s) 133
Hin1II CATG 3 cut(s) 412, 531, 670
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HincII GTYRAC 2 cut(s) 653, 931
HindII GTYRAC 2 cut(s) 653, 931
HinfI GANTC 2 cut(s) 60, 557
HpaII CCGG 2 cut(s) 235, 675
HphI GGTGA 2 cut(s) 314, 681
Hpy166II GTNNAC 2 cut(s) 653, 931
Hpy188I TCNGA 4 cut(s) 59, 73, 246, 334
Hpy188III TCNNGA 4 cut(s) 22, 409, 539, 866
Hpy8I GTNNAC 2 cut(s) 653, 931
HpyAV CCTTC 3 cut(s) 283, 346, 1030
HpyCH4III ACNGT 3 cut(s) 434, 650, 740
HpyCH4IV ACGT 1 cut(s) 1031
HpyCH4V TGCA 3 cut(s) 40, 531, 955
HpyF10VI GCNNNNNNNGC 2 cut(s) 592, 680
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 1 cut(s) 1031
Hsp92II CATG 3 cut(s) 412, 531, 670
HspAI GCGC 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 6 cut(s) 138, 147, 151, 175, 329, 601
LmnI GCTCC 4 cut(s) 334, 385, 688, 726
Lsp1109I GCAGC 4 cut(s) 280, 281, 284, 926
MaeI CTAG 5 cut(s) 866, 900, 911, 1025, 1039
MaeII ACGT 1 cut(s) 1031
MaeIII GTNAC 1 cut(s) 302
MalI GATC 6 cut(s) 140, 149, 153, 177, 331, 603
MboI GATC 6 cut(s) 138, 147, 151, 175, 329, 601
MboII GAAGA 9 cut(s) 21, 89, 116, 215, 361, 777, 780, 829, 839
MfeI CAATTG 1 cut(s) 41
MflI RGATCY 2 cut(s) 175, 601
MhlI GDGCHC 1 cut(s) 382
MluCI AATT 4 cut(s) 41, 312, 703, 780
MnlI CCTC 8 cut(s) 57, 132, 222, 293, 457, 500, 558, 994
MseI TTAA 4 cut(s) 393, 441, 623, 1008
MspA1I CMGCKG 1 cut(s) 917
MspI CCGG 2 cut(s) 235, 675
MspR9I CCNGG 1 cut(s) 51
MunI CAATTG 1 cut(s) 41
Mva1269I GAATGC 1 cut(s) 17
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 2 cut(s) 592, 680
NdeII GATC 6 cut(s) 138, 147, 151, 175, 329, 601
NlaIII CATG 3 cut(s) 412, 531, 670
NlaIV GGNNCC 3 cut(s) 233, 569, 987
NmuCI GTSAC 1 cut(s) 302
NspI RCATGY 1 cut(s) 531
PagI TCATGA 1 cut(s) 408
PceI AGGCCT 1 cut(s) 259
PctI GAATGC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 60, 557
PflMI CCANNNNNTGG 1 cut(s) 581
PkrI GCNGC 4 cut(s) 271, 274, 295, 916
Ppu21I YACGTR 1 cut(s) 1032
Psp124BI GAGCTC 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 49
PspFI CCCAGC 1 cut(s) 581
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 3 cut(s) 233, 569, 987
PspPI GGNCC 3 cut(s) 232, 584, 677
PsuI RGATCY 2 cut(s) 175, 601
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 4 cut(s) 215, 436, 486, 1034
RsaNI GTAC 4 cut(s) 214, 435, 485, 1033
SacI GAGCTC 1 cut(s) 382
SalI GTCGAC 1 cut(s) 651
SaqAI TTAA 4 cut(s) 393, 441, 623, 1008
SatI GCNGC 4 cut(s) 270, 273, 294, 915
Sau3AI GATC 6 cut(s) 138, 147, 151, 175, 329, 601
Sau96I GGNCC 3 cut(s) 232, 584, 677
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 1 cut(s) 382
SfcI CTRYAG 1 cut(s) 597
SinI GGWCC 2 cut(s) 232, 677
SmlI CTYRAG 2 cut(s) 448, 537
SmoI CTYRAG 2 cut(s) 448, 537
SnaBI TACGTA 1 cut(s) 1032
Sse9I AATT 4 cut(s) 41, 312, 703, 780
SseBI AGGCCT 1 cut(s) 259
SsiI CCGC 1 cut(s) 15
SspMI CTAG 5 cut(s) 866, 900, 911, 1025, 1039
SstI GAGCTC 1 cut(s) 382
StuI AGGCCT 1 cut(s) 259
StyD4I CCNGG 1 cut(s) 49
TaaI ACNGT 3 cut(s) 434, 650, 740
TaiI ACGT 1 cut(s) 1034
TaqI TCGA 5 cut(s) 150, 376, 429, 493, 652
TasI AATT 4 cut(s) 41, 312, 703, 780
TfiI GAWTC 2 cut(s) 60, 557
Tru1I TTAA 4 cut(s) 393, 441, 623, 1008
Tru9I TTAA 4 cut(s) 393, 441, 623, 1008
TscAI CASTG 2 cut(s) 559, 861
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 4 cut(s) 269, 272, 293, 914
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 4 cut(s) 80, 425, 655, 1026
TspGWI ACGGA 2 cut(s) 158, 159
TspRI CASTG 2 cut(s) 559, 861
Van91I CCANNNNNTGG 1 cut(s) 581
VpaK11BI GGWCC 2 cut(s) 232, 677
XbaI TCTAGA 1 cut(s) 865
XceI RCATGY 1 cut(s) 531
XmiI GTMKAC 1 cut(s) 652
XspI CTAG 5 cut(s) 866, 900, 911, 1025, 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.