RchiOBHm_Chr5g0059781
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016803
Physical Location & Seq
Forward (+)
64871164 .. 64871811
648 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33636

Sequence Viewer

Length: 543 bp
ATGGAGATAGAACCAACCTTTAGTGCTTCACCTAATTTCCAATTACCTCCTGGTTTCAGATTCCATCCATCTGATGAAGAACTCATTGTTCACTACCTGCAAAGAAAAGTCACTTCACGGCCACTTCCAGCACACTTGATCACAGAAATCGATCTCTATAAGTATAATCCATGGGAGCTACCTAAGATGGCTTTGTTTGGGGAAGATGAATGGTATTTCTTTAGCCCGAGGGAGAGGAAGTATCCCAACGGGGAGAGGCCTAATAGAGCAGCAGCTTCAGGTTACTGGAAAGCTGCTGGAAGTGACAAGCCAATTCTCACCTCTTGTGGAATATCGAAGCGCATAGGAGTCAAGAAGGCTTTGGTCTTTTACACTGGTCGAGCTCCAACAGGAATTAAAACTGAATGGATCATGGTCGAGTATAGACTGCTCGACAGTACAACTAAACCCTCAAGGTCAAAAGGGTCTATGAGGGTAAGTGAAATTTTCAATGCACTATTGAGATTGCATATATGTGTATCTCAAAAACATGGAGCAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

180

Amino Acids

20.62

Weight (kDa)

9.54

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 143 6.9e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016803)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32720
malus_domestica MD03G1115100.v1.1 MD11G1133000.v1.1
prunus_persica Prupe.6G098600_v2.0.a1
pyrus_communis pycom11g10980
rosa_chinensis RchiOBHm_Chr5g0059781
rosa_laevigata RLG00000035329
rosa_multiflora Rmu_sc0000660.1_g000020
rosa_roxburghii Rroxscaffold_1G00020790
rosa_samantha Rh5AG390500 Rh5BG402000 Rh5CG426000 Rh5DG418400
rosa_wichuraiana Rw5G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 105
AclWI GGATC 1 cut(s) 416
AcoI YGGCCR 1 cut(s) 119
AcsI RAATTY 1 cut(s) 483
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 1 cut(s) 439
AgsI TTSAA 1 cut(s) 490
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 4 cut(s) 178, 275, 293, 383
AluI AGCT 4 cut(s) 178, 275, 293, 383
Alw21I GWGCWC 1 cut(s) 385
AlwI GGATC 1 cut(s) 416
Ama87I CYCGRG 1 cut(s) 226
AoxI GGCC 2 cut(s) 119, 257
ApeKI GCWGC 3 cut(s) 269, 272, 293
ApoI RAATTY 1 cut(s) 483
AspLEI GCGC 1 cut(s) 342
AsuHPI GGTGA 2 cut(s) 21, 310
AvaI CYCGRG 1 cut(s) 226
BanII GRGCYC 1 cut(s) 385
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 3 cut(s) 280, 281, 284
BccI CCATC 3 cut(s) 72, 76, 181
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 51
BciVI GTATCC 1 cut(s) 252
BclI TGATCA 1 cut(s) 138
BfaI CTAG 1 cut(s) 541
BfuAI ACCTGC 1 cut(s) 105
BfuI GTATCC 1 cut(s) 252
BisI GCNGC 3 cut(s) 270, 273, 294
BlsI GCNGC 3 cut(s) 271, 274, 295
Bme1390I CCNGG 1 cut(s) 51
BmeT110I CYCGRG 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 436
Bsa29I ATCGAT 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 170, 227
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bse1I ACTGG 2 cut(s) 290, 379
BseBI CCWGG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 170, 227
BseGI GGATG 1 cut(s) 64
BseNI ACTGG 2 cut(s) 290, 379
BseXI GCAGC 3 cut(s) 280, 281, 284
BshFI GGCC 2 cut(s) 121, 259
BshVI ATCGAT 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 385
BsiHKCI CYCGRG 1 cut(s) 226
BsnI GGCC 2 cut(s) 121, 259
BsoBI CYCGRG 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 3 cut(s) 138, 151, 408
Bsp19I CCATGG 1 cut(s) 170
BspANI GGCC 2 cut(s) 121, 259
BspDI ATCGAT 1 cut(s) 150
BspMI ACCTGC 1 cut(s) 105
BspPI GGATC 1 cut(s) 416
BsrI ACTGG 2 cut(s) 290, 379
BssECI CCNNGG 2 cut(s) 170, 227
BssMI GATC 3 cut(s) 138, 151, 408
BssT1I CCWWGG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 437
BstDEI CTNAG 1 cut(s) 183
BstDSI CCRYGG 1 cut(s) 170
BstF5I GGATG 1 cut(s) 64
BstHHI GCGC 1 cut(s) 342
BstKTI GATC 3 cut(s) 141, 154, 411
BstMBI GATC 3 cut(s) 138, 151, 408
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 49
BstV1I GCAGC 3 cut(s) 280, 281, 284
Bsu15I ATCGAT 1 cut(s) 150
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 2 cut(s) 121, 259
BsuTUI ATCGAT 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 170
BtsCI GGATG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 372
BveI ACCTGC 1 cut(s) 105
CfoI GCGC 1 cut(s) 342
ClaI ATCGAT 1 cut(s) 150
Csp6I GTAC 1 cut(s) 438
CviAII CATG 3 cut(s) 171, 412, 530
CviQI GTAC 1 cut(s) 438
DdeI CTNAG 1 cut(s) 183
DpnI GATC 3 cut(s) 140, 153, 410
DpnII GATC 3 cut(s) 138, 151, 408
EaeI YGGCCR 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 383
Eco130I CCWWGG 1 cut(s) 170
Eco147I AGGCCT 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 385
Eco53kI GAGCTC 1 cut(s) 383
Eco57I CTGAAG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 170
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 3 cut(s) 174, 415, 533
FatI CATG 3 cut(s) 170, 411, 529
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 270, 273, 294
FokI GGATG 1 cut(s) 51
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 3 cut(s) 270, 273, 294
FspBI CTAG 1 cut(s) 541
GlaI GCGC 1 cut(s) 341
GluI GCNGC 3 cut(s) 270, 273, 294
HaeIII GGCC 2 cut(s) 121, 259
HhaI GCGC 1 cut(s) 342
Hin1II CATG 3 cut(s) 174, 415, 533
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HinfI GANTC 2 cut(s) 60, 348
HphI GGTGA 2 cut(s) 21, 310
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 59, 73
Hpy188III TCNNGA 1 cut(s) 352
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 1 cut(s) 437
HpyCH4V TGCA 3 cut(s) 100, 494, 508
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 3 cut(s) 174, 415, 533
HspAI GCGC 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 3 cut(s) 138, 151, 408
LmnI GCTCC 3 cut(s) 175, 388, 533
LpnPI CCDG 9 cut(s) 36, 63, 110, 141, 264, 271, 282, 360, 375
Lsp1109I GCAGC 3 cut(s) 280, 281, 284
MaeI CTAG 1 cut(s) 541
MaeIII GTNAC 3 cut(s) 109, 281, 302
MalI GATC 3 cut(s) 140, 153, 410
MboI GATC 3 cut(s) 138, 151, 408
MboII GAAGA 2 cut(s) 89, 215
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 5 cut(s) 34, 41, 312, 393, 483
MlyI GAGTC 1 cut(s) 357
MmeI TCCRAC 1 cut(s) 410
MnlI CCTC 7 cut(s) 57, 222, 228, 249, 331, 460, 465
MseI TTAA 1 cut(s) 396
MslI CAYNNNNRTG 1 cut(s) 513
MspR9I CCNGG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 51
NcoI CCATGG 1 cut(s) 170
NdeII GATC 3 cut(s) 138, 151, 408
NlaIII CATG 3 cut(s) 174, 415, 533
NmuCI GTSAC 2 cut(s) 109, 302
PceI AGGCCT 1 cut(s) 259
PfeI GAWTC 1 cut(s) 60
PkrI GCNGC 3 cut(s) 271, 274, 295
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
Psp124BI GAGCTC 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
RsaI GTAC 1 cut(s) 439
RsaNI GTAC 1 cut(s) 438
RseI CAYNNNNRTG 1 cut(s) 513
SacI GAGCTC 1 cut(s) 385
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 3 cut(s) 270, 273, 294
Sau3AI GATC 3 cut(s) 138, 151, 408
SchI GAGTC 1 cut(s) 357
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 451
SmoI CTYRAG 1 cut(s) 451
Sse9I AATT 5 cut(s) 34, 41, 312, 393, 483
SseBI AGGCCT 1 cut(s) 259
SspMI CTAG 1 cut(s) 541
SstI GAGCTC 1 cut(s) 385
StuI AGGCCT 1 cut(s) 259
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 437
TaqI TCGA 5 cut(s) 150, 335, 379, 417, 432
TasI AATT 5 cut(s) 34, 41, 312, 393, 483
TatI WGTACW 1 cut(s) 437
TfiI GAWTC 1 cut(s) 60
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 2 cut(s) 109, 302
TseI GCWGC 3 cut(s) 269, 272, 293
Tsp45I GTSAC 2 cut(s) 109, 302
TspDTI ATGAA 2 cut(s) 90, 222
TspRI CASTG 1 cut(s) 379
XapI RAATTY 1 cut(s) 483
XcmI CCANNNNNNNNNTGG 1 cut(s) 47
XspI CTAG 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.