FvH4_3g35580

Glyoxalase-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013486
Physical Location & Seq
Forward (+)
30555225 .. 30556200
976 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35580.t1

Sequence Viewer

Length: 357 bp
ATGGCGTCGAGTCTGAACCCAACATATGCCTACACGGTGGTGTACGTCAAGGACGTCGCCAAATCCATAGCCTTCTACTCCAAAGCCTTCGGGTACGCGACGACTATAGCATTCACACCGAAACACCAGCACGAGACGGACGATCTCACCGGAAAAGTTCAGAAGCCGAGCTCCGGGGAAGAAAGGCAGCCCGTTGAGGTTTGCTTTGATTACCCCGACGTCGCCTATAAAAGGGCGGTGGAGAACGGAGCGGTGGCGGTGAGTGCGCCGGAACAGAAAGAGTGGGGACAGAAAGTTGGGTATGTACCTAAACAGGTGAGGATGGGAAGCTACGTCAACGAACCTAAACAGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyoxalase Glyoxalase_2

Protein Analysis

119

Amino Acids

13.06

Weight (kDa)

7.78

Isoelectric Point (pI)

33.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07645
fragaria_vesca FvH4_3g35580 FvH4_3g35610
malus_domestica MD07G1053700.v1.1 MD11G1144900.v1.1 MD14G1025700.v1.1
prunus_persica Prupe.6G080800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0063801
rosa_laevigata RLG00000035673
rosa_multiflora Rmu_sc0005685.1_g000007 Rmu_ssc0000309.1_g000017
rosa_roxburghii Rroxscaffold_1G00017030
rosa_rugosa Rorug05G0360000 Rorug05G0360000
rosa_samantha Rh5BG434400 Rh5CG457600 Rh5DG447500
rosa_wichuraiana Rw5G039320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 57, 222
AccBSI CCGCTC 1 cut(s) 251
AccII CGCG 1 cut(s) 98
AciI CCGC 3 cut(s) 236, 251, 257
AcyI GRCGYC 3 cut(s) 5, 54, 219
AfaI GTAC 3 cut(s) 44, 95, 306
AfiI CCNNNNNNNGG 3 cut(s) 173, 231, 350
AleI CACNNNNGTG 1 cut(s) 38
AluBI AGCT 2 cut(s) 171, 330
AluI AGCT 2 cut(s) 171, 330
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 187
AspLEI GCGC 1 cut(s) 268
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 3 cut(s) 139, 271, 328
BanII GRGCYC 1 cut(s) 173
BauI CACGAG 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 316
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 105
BisI GCNGC 1 cut(s) 188
BlsI GCNGC 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 175
BpuMI CCSGG 1 cut(s) 175
BsaHI GRCGYC 3 cut(s) 5, 54, 219
BsaJI CCNNGG 1 cut(s) 174
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 231, 350
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 3 cut(s) 173, 231, 350
BseXI GCAGC 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 173
BsiSI CCGG 3 cut(s) 150, 174, 269
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 3 cut(s) 173, 231, 350
BsmAI GTCTC 1 cut(s) 128
BsmBI CGTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 300
BsmI GAATGC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 3 cut(s) 236, 251, 257
BspFNI CGCG 1 cut(s) 98
BsrBI CCGCTC 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 1 cut(s) 142
BssNI GRCGYC 3 cut(s) 5, 54, 219
BssSI CACGAG 1 cut(s) 131
Bst2BI CACGAG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 37
BstACI GRCGYC 3 cut(s) 5, 54, 219
BstENI CCTNNNNNAGG 1 cut(s) 229
BstF5I GGATG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 173
BstSFI CTRYAG 1 cut(s) 105
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 199
BtsCI GGATG 1 cut(s) 327
CfoI GCGC 1 cut(s) 268
Csp6I GTAC 3 cut(s) 43, 94, 305
CviJI RGCY 6 cut(s) 71, 86, 166, 171, 190, 330
CviKI_1 RGCY 6 cut(s) 71, 86, 166, 171, 190, 330
CviQI GTAC 3 cut(s) 43, 94, 305
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 171
EcoNI CCTNNNNNAGG 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 173
Esp3I CGTCTC 1 cut(s) 128
FaiI YATR 6 cut(s) 25, 27, 68, 107, 228, 303
FaqI GGGAC 1 cut(s) 300
FauNDI CATATG 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 188
FokI GGATG 1 cut(s) 334
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 188
GlaI GCGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 188
HapII CCGG 3 cut(s) 150, 174, 269
HhaI GCGC 1 cut(s) 268
Hin1I GRCGYC 3 cut(s) 5, 54, 219
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 1 cut(s) 10
HpaII CCGG 3 cut(s) 150, 174, 269
HphI GGTGA 3 cut(s) 139, 271, 328
Hpy166II GTNNAC 2 cut(s) 43, 337
Hpy188I TCNGA 2 cut(s) 15, 162
Hpy8I GTNNAC 2 cut(s) 43, 337
Hpy99I CGWCG 5 cut(s) 10, 59, 103, 221, 224
HpyAV CCTTC 2 cut(s) 82, 97
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 4 cut(s) 45, 54, 219, 333
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpySE526I ACGT 4 cut(s) 45, 54, 219, 333
Hsp92I GRCGYC 3 cut(s) 5, 54, 219
HspAI GCGC 1 cut(s) 266
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 2 cut(s) 176, 248
LpnPI CCDG 6 cut(s) 140, 163, 187, 282, 299, 335
Lsp1109I GCAGC 1 cut(s) 199
MaeII ACGT 4 cut(s) 45, 54, 219, 333
MalI GATC 1 cut(s) 144
MbiI CCGCTC 1 cut(s) 251
MboI GATC 1 cut(s) 142
MboII GAAGA 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 173
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 2 cut(s) 190, 312
MseI TTAA 1 cut(s) 355
MslI CAYNNNNRTG 1 cut(s) 38
MspI CCGG 3 cut(s) 150, 174, 269
MspR9I CCNGG 1 cut(s) 175
Mva1269I GAATGC 1 cut(s) 110
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 263
NciI CCSGG 1 cut(s) 175
NdeI CATATG 1 cut(s) 25
NdeII GATC 1 cut(s) 142
NmeAIII GCCGAG 1 cut(s) 192
OliI CACNNNNGTG 1 cut(s) 38
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 138
PctI GAATGC 1 cut(s) 110
PkrI GCNGC 1 cut(s) 189
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
Psp124BI GAGCTC 1 cut(s) 173
RsaI GTAC 3 cut(s) 44, 95, 306
RsaNI GTAC 3 cut(s) 43, 94, 305
RseI CAYNNNNRTG 1 cut(s) 38
SacI GAGCTC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 355
SatI GCNGC 1 cut(s) 188
Sau3AI GATC 1 cut(s) 142
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 1 cut(s) 173
SfcI CTRYAG 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 38
SsiI CCGC 3 cut(s) 236, 251, 257
SstI GAGCTC 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 173
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 4 cut(s) 48, 57, 222, 336
TaqI TCGA 1 cut(s) 8
Tru1I TTAA 1 cut(s) 355
Tru9I TTAA 1 cut(s) 355
TseI GCWGC 1 cut(s) 187
TspGWI ACGGA 2 cut(s) 152, 261
XagI CCTNNNNNAGG 1 cut(s) 229
ZraI GACGTC 2 cut(s) 55, 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.