Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013486

Physical Location & Seq

Genomic Coordinates Reverse (-)

5487521 .. 5488656

Gene Structure 1136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G080800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCGACGACGGGGTCGAAGATGAACACAGTGTTTGCTTACACGGTGGTGTACGTGAAGGACGTTGCTAAATCCACAACCTTCTACTCCAAAGCCTTCGGCTACAACATTCGTCGTATAGACGACTCTAACAGATGGGGGGAGTTAGAAAGTGGGCAAACAACGATAGCGTTCACGCCGGTGCACCAGCACGAGACGGATGATCTGACAGGTGCAGTTAAAACCCCAAGCTCTGGCCGTGAGAGGCAGCCGGTTGAGGTTTGCTTTGCCTACCCTGACGTTGATGCTGCCTACAAAAGGGCGGTAGAGAATGGGGCGGTGGCGGTGAGTGAGCCAGAAGAGAAAGAGTGGGGACAGAAAGTGGGGTATGTACGAGATCCTGATGGGATCGTGGTCAGGTTGGGAAGCTACGTCAACCCACCAACAGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase Glyoxalase_2

Protein Analysis

145

Amino Acids

15.89

Weight (kDa)

5.7

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07645
fragaria_vesca	FvH4_3g35580 FvH4_3g35610
malus_domestica	MD07G1053700.v1.1 MD11G1144900.v1.1 MD14G1025700.v1.1
prunus_persica	Prupe.6G080800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0063801
rosa_laevigata	RLG00000035673
rosa_multiflora	Rmu_sc0005685.1_g000007 Rmu_ssc0000309.1_g000017
rosa_roxburghii	Rroxscaffold_1G00017030
rosa_rugosa	Rorug05G0360000 Rorug05G0360000
rosa_samantha	Rh5BG434400 Rh5CG457600 Rh5DG447500
rosa_wichuraiana	Rw5G039320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AccB7I	CCANNNNNTGG	1 cut(s)	233
AciI	CCGC	3 cut(s)	302, 317, 323
AclWI	GGATC	2 cut(s)	371, 395
AcoI	YGGCCR	1 cut(s)	235
AfaI	GTAC	2 cut(s)	53, 372
AfiI	CCNNNNNNNGG	2 cut(s)	233, 297
AleI	CACNNNNGTG	2 cut(s)	47, 179
AluBI	AGCT	2 cut(s)	231, 408
AluI	AGCT	2 cut(s)	231, 408
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	188
Alw44I	GTGCAC	1 cut(s)	182
AlwI	GGATC	2 cut(s)	371, 395
AoxI	GGCC	1 cut(s)	235
ApaLI	GTGCAC	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	247, 287
AsuHPI	GGTGA	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	186
BauI	CACGAG	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	259, 274
BccI	CCATC	2 cut(s)	129, 377
BceAI	ACGGC	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	248, 288
BlsI	GCNGC	2 cut(s)	249, 289
BmsI	GCATC	1 cut(s)	274
BsaAI	YACGTR	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 297
Bse118I	RCCGGY	2 cut(s)	178, 250
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	2 cut(s)	233, 297
BseSI	GKGCMC	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	259, 274
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	179, 251
BslFI	GGGAC	1 cut(s)	366
BslI	CCNNNNNNNGG	2 cut(s)	233, 297
BsmAI	GTCTC	1 cut(s)	188
BsmBI	CGTCTC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	366
BsnI	GGCC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	202, 376, 387
BspACI	CCGC	3 cut(s)	302, 317, 323
BspANI	GGCC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	371, 395
BsrFI	RCCGGY	2 cut(s)	178, 250
BssAI	RCCGGY	2 cut(s)	178, 250
BssMI	GATC	3 cut(s)	202, 376, 387
BssSI	CACGAG	1 cut(s)	191
Bst2BI	CACGAG	1 cut(s)	191
Bst4CI	ACNGT	2 cut(s)	31, 46
Bst6I	CTCTTC	1 cut(s)	333
BstBAI	YACGTR	1 cut(s)	55
BstENI	CCTNNNNNAGG	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	3 cut(s)	205, 379, 390
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	3 cut(s)	202, 376, 387
BstSLI	GKGCMC	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	259, 274
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	36
Cfr10I	RCCGGY	2 cut(s)	178, 250
Csp6I	GTAC	2 cut(s)	52, 371
CviJI	RGCY	7 cut(s)	95, 102, 231, 237, 250, 334, 408
CviKI_1	RGCY	7 cut(s)	95, 102, 231, 237, 250, 334, 408
CviQI	GTAC	2 cut(s)	52, 371
DpnI	GATC	3 cut(s)	204, 378, 389
DpnII	GATC	3 cut(s)	202, 376, 387
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EcoNI	CCTNNNNNAGG	1 cut(s)	295
Esp3I	CGTCTC	1 cut(s)	188
FaiI	YATR	2 cut(s)	119, 369
FaqI	GGGAC	1 cut(s)	366
Fnu4HI	GCNGC	2 cut(s)	248, 288
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	2 cut(s)	248, 288
GluI	GCNGC	2 cut(s)	248, 288
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	2 cut(s)	179, 251
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	2 cut(s)	179, 251
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	4 cut(s)	52, 174, 184, 415
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	380
Hpy8I	GTNNAC	4 cut(s)	52, 174, 184, 415
Hpy99I	CGWCG	3 cut(s)	10, 13, 117
HpyAV	CCTTC	3 cut(s)	52, 91, 106
HpyCH4III	ACNGT	2 cut(s)	31, 46
HpyCH4IV	ACGT	4 cut(s)	54, 63, 279, 411
HpyCH4V	TGCA	2 cut(s)	184, 215
HpySE526I	ACGT	4 cut(s)	54, 63, 279, 411
Kzo9I	GATC	3 cut(s)	202, 376, 387
LpnPI	CCDG	9 cut(s)	192, 195, 200, 219, 264, 288, 348, 382, 393
Lsp1109I	GCAGC	2 cut(s)	259, 274
LweI	GCATC	1 cut(s)	274
MaeII	ACGT	4 cut(s)	54, 63, 279, 411
MalI	GATC	3 cut(s)	204, 378, 389
MboI	GATC	3 cut(s)	202, 376, 387
MboII	GAAGA	2 cut(s)	31, 350
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	2 cut(s)	237, 250
MseI	TTAA	1 cut(s)	219
MslI	CAYNNNNRTG	2 cut(s)	47, 179
MspI	CCGG	2 cut(s)	179, 251
NdeII	GATC	3 cut(s)	202, 376, 387
OliI	CACNNNNGTG	2 cut(s)	47, 179
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 60
PflFI	GACNNNGTC	1 cut(s)	13
PflMI	CCANNNNNTGG	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	249, 289
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Ppu21I	YACGTR	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	376
PsyI	GACNNNGTC	1 cut(s)	13
RsaI	GTAC	2 cut(s)	53, 372
RsaNI	GTAC	2 cut(s)	52, 371
RseI	CAYNNNNRTG	2 cut(s)	47, 179
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	2 cut(s)	248, 288
Sau3AI	GATC	3 cut(s)	202, 376, 387
SchI	GAGTC	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	186
SfaNI	GCATC	1 cut(s)	274
SgrAI	CRCCGGYG	1 cut(s)	178
SmiMI	CAYNNNNRTG	2 cut(s)	47, 179
SsiI	CCGC	3 cut(s)	302, 317, 323
TaaI	ACNGT	2 cut(s)	31, 46
TaiI	ACGT	4 cut(s)	57, 66, 282, 414
TaqI	TCGA	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	1 cut(s)	36
TseI	GCWGC	2 cut(s)	247, 287
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	36
Tth111I	GACNNNGTC	1 cut(s)	13
Van91I	CCANNNNNTGG	1 cut(s)	233
VneI	GTGCAC	1 cut(s)	182
XagI	CCTNNNNNAGG	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.