FvH4_3g35610

Glyoxalase-like domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
30579270 .. 30579875
606 bp
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UTR
Exon/CDS
Intron
FvH4_3g35610.t1

Sequence Viewer

Length: 237 bp
ATGGCGTCGAGTCTGAACCCAGCATATGCCTACACGGTGGTGTACGTCAAGGACGTCGCCAAATCCATAGCCTTCTACTCCAAAGCCTTCGGGTACGCGAGGGCGGTGGAGAACGGAGCGGTGGCGGTGAGTGCGCCGGAACAGAAAGAGTGGGGACAGAAAGTCGGGTATGTACGAGATCCCGATGGGATTGTGGTGAGGATGGGAAGCTACGTCAACGAACCTAAACAAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

8.45

Weight (kDa)

8.93

Isoelectric Point (pI)

22.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013486)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 57
AccBSI CCGCTC 1 cut(s) 119
AccII CGCG 1 cut(s) 98
AciI CCGC 3 cut(s) 104, 119, 125
AclWI GGATC 1 cut(s) 173
AcyI GRCGYC 2 cut(s) 5, 54
AfaI GTAC 3 cut(s) 44, 95, 174
AfiI CCNNNNNNNGG 1 cut(s) 230
AhdI GACNNNNNGTC 1 cut(s) 161
AleI CACNNNNGTG 1 cut(s) 38
AluBI AGCT 1 cut(s) 210
AluI AGCT 1 cut(s) 210
AlwI GGATC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 139, 208
BccI CCATC 2 cut(s) 179, 196
BmeRI GACNNNNNGTC 1 cut(s) 161
BsaHI GRCGYC 2 cut(s) 5, 54
Bsc4I CCNNNNNNNGG 1 cut(s) 230
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 230
BseYI CCCAGC 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 98
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 168
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 3 cut(s) 104, 119, 125
BspFNI CGCG 1 cut(s) 98
BspPI GGATC 1 cut(s) 173
BsrBI CCGCTC 1 cut(s) 119
BssMI GATC 1 cut(s) 178
BssNI GRCGYC 2 cut(s) 5, 54
Bst4CI ACNGT 1 cut(s) 37
BstACI GRCGYC 2 cut(s) 5, 54
BstENI CCTNNNNNAGG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 207
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 1 cut(s) 181
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstUI CGCG 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BtsCI GGATG 1 cut(s) 207
CfoI GCGC 1 cut(s) 136
Csp6I GTAC 3 cut(s) 43, 94, 173
CviJI RGCY 3 cut(s) 71, 86, 210
CviKI_1 RGCY 3 cut(s) 71, 86, 210
CviQI GTAC 3 cut(s) 43, 94, 173
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
DriI GACNNNNNGTC 1 cut(s) 161
Eam1105I GACNNNNNGTC 1 cut(s) 161
EcoNI CCTNNNNNAGG 1 cut(s) 228
FaiI YATR 4 cut(s) 25, 27, 68, 171
FaqI GGGAC 1 cut(s) 168
FauNDI CATATG 1 cut(s) 25
FokI GGATG 1 cut(s) 214
GlaI GCGC 1 cut(s) 135
GsaI CCCAGC 1 cut(s) 23
HapII CCGG 1 cut(s) 137
HhaI GCGC 1 cut(s) 136
Hin1I GRCGYC 2 cut(s) 5, 54
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 137
HphI GGTGA 2 cut(s) 139, 208
Hpy166II GTNNAC 2 cut(s) 43, 217
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 2 cut(s) 43, 217
Hpy99I CGWCG 2 cut(s) 10, 59
HpyAV CCTTC 2 cut(s) 82, 97
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 3 cut(s) 45, 54, 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpySE526I ACGT 3 cut(s) 45, 54, 213
Hsp92I GRCGYC 2 cut(s) 5, 54
HspAI GCGC 1 cut(s) 134
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 2 cut(s) 33, 150
MaeII ACGT 3 cut(s) 45, 54, 213
MalI GATC 1 cut(s) 180
MbiI CCGCTC 1 cut(s) 119
MboI GATC 1 cut(s) 178
MflI RGATCY 1 cut(s) 178
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 2 cut(s) 93, 192
MseI TTAA 1 cut(s) 235
MslI CAYNNNNRTG 1 cut(s) 38
MspI CCGG 1 cut(s) 137
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeI CATATG 1 cut(s) 25
NdeII GATC 1 cut(s) 178
OliI CACNNNNGTG 1 cut(s) 38
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PspFI CCCAGC 1 cut(s) 19
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 3 cut(s) 44, 95, 174
RsaNI GTAC 3 cut(s) 43, 94, 173
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 1 cut(s) 235
Sau3AI GATC 1 cut(s) 178
SchI GAGTC 1 cut(s) 19
SetI ASST 6 cut(s) 48, 57, 212, 216, 226, 235
SmiMI CAYNNNNRTG 1 cut(s) 38
SsiI CCGC 3 cut(s) 104, 119, 125
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 3 cut(s) 48, 57, 216
TaqI TCGA 1 cut(s) 8
Tru1I TTAA 1 cut(s) 235
Tru9I TTAA 1 cut(s) 235
TspGWI ACGGA 1 cut(s) 129
XagI CCTNNNNNAGG 1 cut(s) 228
ZraI GACGTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.