FvH4_3g35950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014466
Physical Location & Seq
Reverse (-)
30827210 .. 30827800
591 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35950.t1

Sequence Viewer

Length: 591 bp
ATGTACAAGGCGGAGTGCTACAAAGACTTCATGGTTGGCTACTCCGACTCGAAAGCTGCTCAAATGTTGGTTTCCGATAAAGATGGTGGAGGTGCTCTAAATCTCAATCCTTTGGAATTCAAACTCTTTGTTCGGGAATTTGATGATAGGCAAGGTTGTCAAATTAAGCGCAACAATTCAAATAGAGATGATAAAGAAGAAGGTCGAGATGGTTCTGAGGTTCATCAACGAGAGGAGCAAGATCACCAAGTAAGAGGTCAGGAAGAAAAGCATGAAGACAACTTCGACATGTTTGTTTCGTCCTTGAAGGTCAAGATTCCATCTGCAGAAGAAGCAAAAGGCCTTGAAGACGACGATGAAGGGATGAAGACTCCTACTTCTTTGGATCAGAAGATCACTGTGAGCCTCAAGTCCCCTCCAGGTGCACCAAGAAAACCAAAAGCACTGCCACTAAAGAAGCGCAAAGCTAATCGCCACCCGAGACTTTTGCTTGATCTTTCGAGGGAGATTGAGTTGTTGTTTCCTCCGGTTGTCTGTGGCGATCTTGGTGGTGATAAGATTAAGAAGAAATCCAGACAAGAAAGCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.2

Weight (kDa)

6.46

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014466)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59360
fragaria_vesca FvH4_3g35950
malus_domestica MD03G1095400.v1.1 MD11G1110400.v1.1
prunus_persica Prupe.6G078900_v2.0.a1
pyrus_communis pycom03g07830 pycom11g09120
rosa_chinensis RchiOBHm_Chr5g0064301
rosa_laevigata RLG00000035714
rosa_multiflora Rmu_sc0002695.1_g000011
rosa_roxburghii Rroxscaffold_1G00016710
rosa_rugosa Rorug05G0363900
rosa_samantha Rh5AG421600 Rh5BG437400 Rh5CG460000 Rh5DG450600
rosa_wichuraiana Rw5G039700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 11
AclWI GGATC 1 cut(s) 393
AcsI RAATTY 2 cut(s) 116, 137
AfaI GTAC 1 cut(s) 5
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 4 cut(s) 121, 180, 307, 347
AjnI CCWGG 1 cut(s) 418
AluBI AGCT 3 cut(s) 56, 467, 585
AluI AGCT 3 cut(s) 56, 467, 585
Alw21I GWGCWC 2 cut(s) 97, 427
Alw26I GTCTC 1 cut(s) 475
Alw44I GTGCAC 1 cut(s) 423
AlwI GGATC 1 cut(s) 393
Ama87I CYCGRG 1 cut(s) 478
AoxI GGCC 1 cut(s) 340
ApaLI GTGCAC 1 cut(s) 423
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 2 cut(s) 116, 137
AspLEI GCGC 2 cut(s) 171, 462
AsuHPI GGTGA 2 cut(s) 236, 563
AvaI CYCGRG 1 cut(s) 478
BaeGI GKGCMC 1 cut(s) 427
BbsI GAAGAC 3 cut(s) 282, 354, 374
Bbv12I GWGCWC 2 cut(s) 97, 427
BbvI GCAGC 1 cut(s) 43
BccI CCATC 3 cut(s) 77, 203, 328
BcgI CGANNNNNNTGC 2 cut(s) 469, 503
BciT130I CCWGG 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 475
BfaI CTAG 1 cut(s) 589
BfmI CTRYAG 1 cut(s) 324
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 420
BmeT110I CYCGRG 1 cut(s) 478
BmrFI CCNGG 1 cut(s) 420
BpiI GAAGAC 3 cut(s) 282, 354, 374
BpmI CTGGAG 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 392
BsaWI WCCGGW 1 cut(s) 526
BsaXI ACNNNNNCTCC 2 cut(s) 497, 527
BseBI CCWGG 1 cut(s) 420
BseGI GGATG 1 cut(s) 369
BseMII CTCAG 1 cut(s) 207
BseRI GAGGAG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 427
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 1 cut(s) 342
BsiHKAI GWGCWC 2 cut(s) 97, 427
BsiHKCI CYCGRG 1 cut(s) 478
BsiSI CCGG 1 cut(s) 527
BslFI GGGAC 1 cut(s) 397
BsmAI GTCTC 1 cut(s) 475
BsmFI GGGAC 1 cut(s) 397
BsnI GGCC 1 cut(s) 342
BsoBI CYCGRG 1 cut(s) 478
Bsp1286I GDGCHC 2 cut(s) 97, 427
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 5 cut(s) 241, 385, 393, 493, 541
BspACI CCGC 1 cut(s) 11
BspANI GGCC 1 cut(s) 342
BspCNI CTCAG 1 cut(s) 208
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 1 cut(s) 393
BsrGI TGTACA 1 cut(s) 3
BssMI GATC 5 cut(s) 241, 385, 393, 493, 541
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 400
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 369
BstHHI GCGC 2 cut(s) 171, 462
BstKTI GATC 5 cut(s) 244, 388, 396, 496, 544
BstMAI GTCTC 1 cut(s) 475
BstMBI GATC 5 cut(s) 241, 385, 393, 493, 541
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 418
BstSFI CTRYAG 1 cut(s) 324
BstSLI GKGCMC 1 cut(s) 427
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 3 cut(s) 282, 354, 374
BsuRI GGCC 1 cut(s) 342
BtsCI GGATG 1 cut(s) 369
BtsI GCAGTG 1 cut(s) 443
BtsIMutI CAGTG 2 cut(s) 396, 443
CfoI GCGC 2 cut(s) 171, 462
Csp6I GTAC 1 cut(s) 4
CviAII CATG 3 cut(s) 31, 272, 289
CviJI RGCY 6 cut(s) 39, 56, 342, 405, 467, 585
CviKI_1 RGCY 6 cut(s) 39, 56, 342, 405, 467, 585
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 216
DpnI GATC 5 cut(s) 243, 387, 395, 495, 543
DpnII GATC 5 cut(s) 241, 385, 393, 493, 541
EciI GGCGGA 1 cut(s) 26
Eco147I AGGCCT 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 478
EcoRI GAATTC 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 418
FaeI CATG 3 cut(s) 34, 275, 292
FaiI YATR 3 cut(s) 32, 273, 290
FaqI GGGAC 1 cut(s) 397
FatI CATG 3 cut(s) 30, 271, 288
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 376
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 589
GlaI GCGC 2 cut(s) 170, 461
GluI GCNGC 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 1 cut(s) 342
HapII CCGG 1 cut(s) 527
HhaI GCGC 2 cut(s) 171, 462
Hin1II CATG 3 cut(s) 34, 275, 292
Hin6I GCGC 2 cut(s) 169, 460
HinP1I GCGC 2 cut(s) 169, 460
HinfI GANTC 3 cut(s) 47, 316, 370
HpaII CCGG 1 cut(s) 527
HphI GGTGA 2 cut(s) 236, 563
Hpy166II GTNNAC 1 cut(s) 425
Hpy188I TCNGA 4 cut(s) 46, 76, 217, 390
Hpy188III TCNNGA 5 cut(s) 134, 206, 260, 313, 573
Hpy8I GTNNAC 1 cut(s) 425
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 3 cut(s) 194, 301, 353
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4V TGCA 2 cut(s) 326, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 3 cut(s) 34, 275, 292
HspAI GCGC 2 cut(s) 169, 460
Kzo9I GATC 5 cut(s) 241, 385, 393, 493, 541
LmnI GCTCC 2 cut(s) 235, 590
LpnPI CCDG 5 cut(s) 245, 405, 432, 540, 586
Lsp1109I GCAGC 1 cut(s) 43
MaeI CTAG 1 cut(s) 589
MalI GATC 5 cut(s) 243, 387, 395, 495, 543
MboI GATC 5 cut(s) 241, 385, 393, 493, 541
MboII GAAGA 8 cut(s) 209, 275, 287, 341, 359, 379, 403, 577
MhlI GDGCHC 2 cut(s) 97, 427
MluCI AATT 4 cut(s) 116, 137, 162, 175
MlyI GAGTC 2 cut(s) 41, 364
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 8 cut(s) 83, 211, 226, 248, 416, 426, 495, 534
MseI TTAA 2 cut(s) 165, 561
MspI CCGG 1 cut(s) 527
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 1 cut(s) 332
NdeII GATC 5 cut(s) 241, 385, 393, 493, 541
NlaIII CATG 3 cut(s) 34, 275, 292
NspI RCATGY 1 cut(s) 292
PceI AGGCCT 1 cut(s) 342
PciI ACATGT 1 cut(s) 288
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 2 cut(s) 41, 364
PpsI GAGTC 2 cut(s) 41, 364
PscI ACATGT 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PstI CTGCAG 1 cut(s) 328
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 165, 561
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 5 cut(s) 241, 385, 393, 493, 541
SchI GAGTC 2 cut(s) 41, 364
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 2 cut(s) 97, 427
SfcI CTRYAG 1 cut(s) 324
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 4 cut(s) 116, 137, 162, 175
SseBI AGGCCT 1 cut(s) 342
SsiI CCGC 1 cut(s) 11
SspMI CTAG 1 cut(s) 589
StuI AGGCCT 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 418
TaaI ACNGT 1 cut(s) 400
TaqI TCGA 4 cut(s) 50, 205, 285, 500
TasI AATT 4 cut(s) 116, 137, 162, 175
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 2 cut(s) 165, 561
Tru9I TTAA 2 cut(s) 165, 561
TscAI CASTG 2 cut(s) 403, 450
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 5 cut(s) 19, 212, 288, 372, 380
TspRI CASTG 2 cut(s) 403, 450
VneI GTGCAC 1 cut(s) 423
XapI RAATTY 2 cut(s) 116, 137
XceI RCATGY 1 cut(s) 292
XspI CTAG 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.