Rorug05G0363900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0014466
Physical Location & Seq
Reverse (-)
48336219 .. 48337124
906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0363900.1

Sequence Viewer

Length: 906 bp
ATGATAACTCTCCCCAGTGGAACCCTAGCAGCACCGACTGGAGGAGCAGAGCATGAAGACGGCGGTCTTTGCCGCCCTCGTATAGCGCGCCAGACTCGCTTCGGTGTCAGGTTTCTCCCTACGGTTTTTTTATGGCCGGTCTTGGCTCCGATTCTAATCGGACGTATCCAATTTCTTACTGCAGATCCGATTATAAGGGAGAAGGATTTAGCTAATGAGTGCCTGACCTTTTGGGATGACGGTGGTGGGACGACATATGTTATTTCGGTGTGGCGTCCCGACAATTTGGCTAGACAGCGAAGTGTTAATGTGGGTGGAATCGATATGTATATCCCTAGTTTTGATGCCTCGACTACCGAGCTTGGGTTGCGACTATCGGGTCGCGGTGGCAAAGACGACCTAGTTTGGATGGAAACCTGGCTGAGGAAGAAAGCAGTGTGGAAGATCGTCGGCGTTGCAGGAGGAACCTGGCTCAGGATGGCGGTTGACATGAGTGGCGGCGCTAGACTAGGTGTCGAGGCTGATTTCGGGTTGTTAAAAGGTTGGGTGCCCAGAGCATTTGGGCAACCCAATTTCTATAGAAGGTCAAAGGGTGTATTTTATGCATGGGATATATTATCACATTTGGGCTCTCCTGTAATGAACCTGGCTGCAATGATTCTGAGATTGTTGGAGAGAAACGTTGAGCAACCAAAGAGGAAGAGCGGCCGTATTGTGGGTAATTTGAATGAGTTGCCTTATGGTACGGCGGGGACGAGCAAGACTGAGAAAAGTGATACTGACTTAGGCGCGAAGACTACAACCAAGAGCCGAGAGACCAACCTGATGCCGAGGTTGTTGGCTACTGTAGAGGTTGAAGATGGTGCTTGTTCCAACCCTAAAGGGGAGGGACTAGCGCCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

32.94

Weight (kDa)

9.4

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014466)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59360
fragaria_vesca FvH4_3g35950
malus_domestica MD03G1095400.v1.1 MD11G1110400.v1.1
prunus_persica Prupe.6G078900_v2.0.a1
pyrus_communis pycom03g07830 pycom11g09120
rosa_chinensis RchiOBHm_Chr5g0064301
rosa_laevigata RLG00000035714
rosa_multiflora Rmu_sc0002695.1_g000011
rosa_roxburghii Rroxscaffold_1G00016710
rosa_rugosa Rorug05G0363900
rosa_samantha Rh5AG421600 Rh5BG437400 Rh5CG460000 Rh5DG450600
rosa_wichuraiana Rw5G039700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
AasI GACNNNNNNGTC 1 cut(s) 378
AccB1I GGYRCC 1 cut(s) 547
AccBSI CCGCTC 1 cut(s) 705
AccII CGCG 3 cut(s) 88, 384, 791
AciI CCGC 7 cut(s) 63, 73, 384, 482, 498, 705, 749
AclI AACGTT 1 cut(s) 681
AclWI GGATC 1 cut(s) 179
AcoI YGGCCR 2 cut(s) 134, 706
AcyI GRCGYC 1 cut(s) 274
AfaI GTAC 1 cut(s) 745
AfiI CCNNNNNNNGG 6 cut(s) 41, 363, 423, 474, 715, 883
AgsI TTSAA 2 cut(s) 727, 857
AhdI GACNNNNNGTC 1 cut(s) 512
AjnI CCWGG 3 cut(s) 416, 467, 645
AluBI AGCT 2 cut(s) 212, 361
AluI AGCT 2 cut(s) 212, 361
Alw26I GTCTC 1 cut(s) 809
AlwI GGATC 1 cut(s) 179
AoxI GGCC 2 cut(s) 134, 706
ApeKI GCWGC 2 cut(s) 29, 650
AspLEI GCGC 5 cut(s) 88, 90, 503, 791, 898
BaeGI GKGCMC 1 cut(s) 552
BanI GGYRCC 1 cut(s) 547
BanII GRGCYC 1 cut(s) 632
BbsI GAAGAC 2 cut(s) 63, 800
BbvCI CCTCAGC 1 cut(s) 422
BbvI GCAGC 2 cut(s) 41, 637
BccI CCATC 3 cut(s) 403, 472, 854
BceAI ACGGC 3 cut(s) 76, 693, 762
BciT130I CCWGG 3 cut(s) 418, 469, 647
BciVI GTATCC 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 809
BfaI CTAG 7 cut(s) 26, 291, 336, 401, 504, 509, 893
BfmI CTRYAG 3 cut(s) 180, 577, 846
BfoI RGCGCY 2 cut(s) 504, 899
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 5 cut(s) 30, 73, 499, 651, 706
BlsI GCNGC 5 cut(s) 31, 74, 500, 652, 707
Bme1390I CCNGG 3 cut(s) 418, 469, 647
BmeRI GACNNNNNGTC 1 cut(s) 512
BmiI GGNNCC 4 cut(s) 22, 147, 466, 549
BmrFI CCNGG 3 cut(s) 418, 469, 647
BmrI ACTGGG 1 cut(s) 9
BmsI GCATC 2 cut(s) 334, 816
BmuI ACTGGG 1 cut(s) 9
BoxI GACNNNNGTC 1 cut(s) 63
BpiI GAAGAC 2 cut(s) 63, 800
BpmI CTGGAG 1 cut(s) 60
Bpu10I CCTNAGC 2 cut(s) 422, 473
Bsa29I ATCGAT 1 cut(s) 321
BsaBI GATNNNNATC 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 274
BsaI GGTCTC 1 cut(s) 809
BsaJI CCNNGG 1 cut(s) 830
Bsc4I CCNNNNNNNGG 6 cut(s) 41, 363, 423, 474, 715, 883
Bse118I RCCGGY 1 cut(s) 136
Bse1I ACTGG 2 cut(s) 15, 43
Bse3DI GCAATG 1 cut(s) 660
Bse8I GATNNNNATC 1 cut(s) 155
BseBI CCWGG 3 cut(s) 418, 469, 647
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 830
BseGI GGATG 3 cut(s) 241, 414, 483
BseJI GATNNNNATC 1 cut(s) 155
BseLI CCNNNNNNNGG 6 cut(s) 41, 363, 423, 474, 715, 883
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 4 cut(s) 413, 487, 653, 756
BseNI ACTGG 2 cut(s) 15, 43
BsePI GCGCGC 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 57
BseSI GKGCMC 1 cut(s) 552
BseX3I CGGCCG 1 cut(s) 706
BseXI GCAGC 2 cut(s) 41, 637
Bsh1236I CGCG 3 cut(s) 88, 384, 791
Bsh1285I CGRYCG 1 cut(s) 709
BshFI GGCC 2 cut(s) 136, 708
BshNI GGYRCC 1 cut(s) 547
BshVI ATCGAT 1 cut(s) 321
BsiEI CGRYCG 1 cut(s) 709
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 3 cut(s) 261, 262, 766
BslI CCNNNNNNNGG 6 cut(s) 41, 363, 423, 474, 715, 883
BsmAI GTCTC 1 cut(s) 809
BsmFI GGGAC 3 cut(s) 261, 262, 766
BsnI GGCC 2 cut(s) 136, 708
Bso31I GGTCTC 1 cut(s) 809
Bsp1286I GDGCHC 2 cut(s) 552, 632
Bsp143I GATC 2 cut(s) 184, 444
BspACI CCGC 7 cut(s) 63, 73, 384, 482, 498, 705, 749
BspANI GGCC 2 cut(s) 136, 708
BspCNI CTCAG 4 cut(s) 414, 486, 654, 757
BspDI ATCGAT 1 cut(s) 321
BspFNI CGCG 3 cut(s) 88, 384, 791
BspLI GGNNCC 4 cut(s) 22, 147, 466, 549
BspMAI CTGCAG 1 cut(s) 184
BspPI GGATC 1 cut(s) 179
BspQI GCTCTTC 1 cut(s) 695
BspT107I GGYRCC 1 cut(s) 547
BspTNI GGTCTC 1 cut(s) 809
BsrBI CCGCTC 1 cut(s) 705
BsrDI GCAATG 1 cut(s) 660
BsrFI RCCGGY 1 cut(s) 136
BsrI ACTGG 2 cut(s) 15, 43
BssAI RCCGGY 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 830
BssHII GCGCGC 1 cut(s) 86
BssMI GATC 2 cut(s) 184, 444
BssNI GRCGYC 1 cut(s) 274
Bst2UI CCWGG 3 cut(s) 418, 469, 647
Bst4CI ACNGT 3 cut(s) 124, 242, 847
Bst6I CTCTTC 1 cut(s) 695
BstACI GRCGYC 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 5 cut(s) 422, 473, 662, 765, 784
BstENI CCTNNNNNAGG 2 cut(s) 421, 472
BstF5I GGATG 3 cut(s) 241, 414, 483
BstFNI CGCG 3 cut(s) 88, 384, 791
BstH2I RGCGCY 2 cut(s) 504, 899
BstHHI GCGC 5 cut(s) 88, 90, 503, 791, 898
BstKTI GATC 2 cut(s) 187, 447
BstMAI GTCTC 1 cut(s) 809
BstMBI GATC 2 cut(s) 184, 444
BstMCI CGRYCG 1 cut(s) 709
BstMWI GCNNNNNNNGC 3 cut(s) 69, 96, 367
BstNI CCWGG 3 cut(s) 418, 469, 647
BstPAI GACNNNNGTC 1 cut(s) 63
BstSCI CCNGG 3 cut(s) 416, 467, 645
BstSFI CTRYAG 3 cut(s) 180, 577, 846
BstSLI GKGCMC 1 cut(s) 552
BstUI CGCG 3 cut(s) 88, 384, 791
BstV1I GCAGC 2 cut(s) 41, 637
BstV2I GAAGAC 2 cut(s) 63, 800
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BstZI CGGCCG 1 cut(s) 706
Bsu15I ATCGAT 1 cut(s) 321
BsuI GTATCC 1 cut(s) 176
BsuRI GGCC 2 cut(s) 136, 708
BsuTUI ATCGAT 1 cut(s) 321
BtsCI GGATG 3 cut(s) 241, 414, 483
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 2 cut(s) 22, 441
Cac8I GCNNGC 1 cut(s) 88
CfoI GCGC 5 cut(s) 88, 90, 503, 791, 898
Cfr10I RCCGGY 1 cut(s) 136
ClaI ATCGAT 1 cut(s) 321
CseI GACGC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 744
CviAII CATG 3 cut(s) 53, 490, 606
CviQI GTAC 1 cut(s) 744
DdeI CTNAG 5 cut(s) 422, 473, 662, 765, 784
DpnI GATC 2 cut(s) 186, 446
DpnII GATC 2 cut(s) 184, 444
DrdI GACNNNNNNGTC 1 cut(s) 378
DriI GACNNNNNGTC 1 cut(s) 512
DseDI GACNNNNNNGTC 1 cut(s) 378
EaeI YGGCCR 2 cut(s) 134, 706
EagI CGGCCG 1 cut(s) 706
Eam1104I CTCTTC 1 cut(s) 695
Eam1105I GACNNNNNGTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 695
EclXI CGGCCG 1 cut(s) 706
Eco24I GRGCYC 1 cut(s) 632
Eco31I GGTCTC 1 cut(s) 809
Eco52I CGGCCG 1 cut(s) 706
EcoNI CCTNNNNNAGG 2 cut(s) 421, 472
EcoRII CCWGG 3 cut(s) 416, 467, 645
EcoT22I ATGCAT 1 cut(s) 607
EcoT38I GRGCYC 1 cut(s) 632
FaeI CATG 3 cut(s) 56, 493, 609
FaqI GGGAC 3 cut(s) 261, 262, 766
FatI CATG 3 cut(s) 52, 489, 605
FauI CCCGC 1 cut(s) 742
FauNDI CATATG 1 cut(s) 256
Fnu4HI GCNGC 5 cut(s) 30, 73, 499, 651, 706
FokI GGATG 3 cut(s) 248, 421, 490
FriOI GRGCYC 1 cut(s) 632
Fsp4HI GCNGC 5 cut(s) 30, 73, 499, 651, 706
FspBI CTAG 7 cut(s) 26, 291, 336, 401, 504, 509, 893
GlaI GCGC 5 cut(s) 87, 89, 502, 790, 897
GluI GCNGC 5 cut(s) 30, 73, 499, 651, 706
GsuI CTGGAG 1 cut(s) 60
HaeII RGCGCY 2 cut(s) 504, 899
HaeIII GGCC 2 cut(s) 136, 708
HapII CCGG 1 cut(s) 137
HgaI GACGC 1 cut(s) 263
HhaI GCGC 5 cut(s) 88, 90, 503, 791, 898
Hin1I GRCGYC 1 cut(s) 274
Hin1II CATG 3 cut(s) 56, 493, 609
Hin6I GCGC 5 cut(s) 86, 88, 501, 789, 896
HinP1I GCGC 5 cut(s) 86, 88, 501, 789, 896
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 4 cut(s) 94, 151, 318, 658
HpaII CCGG 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 4 cut(s) 150, 161, 189, 663
Hpy188III TCNNGA 2 cut(s) 278, 475
Hpy8I GTNNAC 1 cut(s) 487
Hpy99I CGWCG 1 cut(s) 452
HpyAV CCTTC 2 cut(s) 196, 576
HpyCH4III ACNGT 3 cut(s) 124, 242, 847
HpyCH4IV ACGT 2 cut(s) 163, 681
HpyCH4V TGCA 4 cut(s) 182, 458, 605, 653
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 96, 367
HpyF3I CTNAG 5 cut(s) 422, 473, 662, 765, 784
HpySE526I ACGT 2 cut(s) 163, 681
Hsp92I GRCGYC 1 cut(s) 274
Hsp92II CATG 3 cut(s) 56, 493, 609
HspAI GCGC 5 cut(s) 86, 88, 501, 789, 896
Kzo9I GATC 2 cut(s) 184, 444
LguI GCTCTTC 1 cut(s) 695
LmnI GCTCC 2 cut(s) 44, 151
Lsp1109I GCAGC 2 cut(s) 41, 637
LweI GCATC 2 cut(s) 334, 816
MaeI CTAG 7 cut(s) 26, 291, 336, 401, 504, 509, 893
MaeII ACGT 2 cut(s) 163, 681
MalI GATC 2 cut(s) 186, 446
MbiI CCGCTC 1 cut(s) 705
MboI GATC 2 cut(s) 184, 444
MboII GAAGA 6 cut(s) 68, 439, 454, 712, 805, 869
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 2 cut(s) 552, 632
MluCI AATT 4 cut(s) 170, 283, 571, 721
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 2 cut(s) 651, 897
Mph1103I ATGCAT 1 cut(s) 607
MseI TTAA 3 cut(s) 306, 536, 904
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 3 cut(s) 418, 469, 647
MvaI CCWGG 3 cut(s) 418, 469, 647
MvnI CGCG 3 cut(s) 88, 384, 791
MwoI GCNNNNNNNGC 3 cut(s) 69, 96, 367
NdeI CATATG 1 cut(s) 256
NdeII GATC 2 cut(s) 184, 444
NlaIII CATG 3 cut(s) 56, 493, 609
NlaIV GGNNCC 4 cut(s) 22, 147, 466, 549
NmeAIII GCCGAG 2 cut(s) 836, 855
NsiI ATGCAT 1 cut(s) 607
PauI GCGCGC 1 cut(s) 86
PciSI GCTCTTC 1 cut(s) 695
PcsI WCGNNNNNNNCGW 1 cut(s) 752
PfeI GAWTC 3 cut(s) 151, 318, 658
PkrI GCNGC 5 cut(s) 31, 74, 500, 652, 707
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PshAI GACNNNNGTC 1 cut(s) 63
PsiI TTATAA 1 cut(s) 194
Psp1406I AACGTT 1 cut(s) 681
Psp6I CCWGG 3 cut(s) 416, 467, 645
PspGI CCWGG 3 cut(s) 416, 467, 645
PspN4I GGNNCC 4 cut(s) 22, 147, 466, 549
PstI CTGCAG 1 cut(s) 184
PsuI RGATCY 1 cut(s) 184
PteI GCGCGC 1 cut(s) 86
RsaI GTAC 1 cut(s) 745
RsaNI GTAC 1 cut(s) 744
SapI GCTCTTC 1 cut(s) 695
SaqAI TTAA 3 cut(s) 306, 536, 904
SatI GCNGC 5 cut(s) 30, 73, 499, 651, 706
Sau3AI GATC 2 cut(s) 184, 444
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 3 cut(s) 418, 469, 647
SduI GDGCHC 2 cut(s) 552, 632
SfaNI GCATC 2 cut(s) 334, 816
SfcI CTRYAG 3 cut(s) 180, 577, 846
Sse9I AATT 4 cut(s) 170, 283, 571, 721
SsiI CCGC 7 cut(s) 63, 73, 384, 482, 498, 705, 749
SspMI CTAG 7 cut(s) 26, 291, 336, 401, 504, 509, 893
StyD4I CCNGG 3 cut(s) 416, 467, 645
TaaI ACNGT 3 cut(s) 124, 242, 847
TaiI ACGT 2 cut(s) 166, 684
TaqI TCGA 3 cut(s) 321, 350, 516
TasI AATT 4 cut(s) 170, 283, 571, 721
TauI GCSGC 3 cut(s) 75, 501, 708
TfiI GAWTC 3 cut(s) 151, 318, 658
Tru1I TTAA 3 cut(s) 306, 536, 904
Tru9I TTAA 3 cut(s) 306, 536, 904
TscAI CASTG 2 cut(s) 22, 441
TseI GCWGC 2 cut(s) 29, 650
TspDTI ATGAA 2 cut(s) 69, 656
TspRI CASTG 2 cut(s) 22, 441
XagI CCTNNNNNAGG 2 cut(s) 421, 472
XspI CTAG 7 cut(s) 26, 291, 336, 401, 504, 509, 893
Zsp2I ATGCAT 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.