Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0014466

Physical Location & Seq

Genomic Coordinates Forward (+)

9770066 .. 9770608

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1110400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTTGGTTTCTGAGAAAAATGGTACTAATAACGGTCTTAATTCCATGGAATTCAATTTCTTAGTGAGACCCGCGTTGAATTTTAATAACCATGCGTGCCAAATTGCGCGTTGTGAAGACGAAGACAAAGGAGAAGATGACGGCTTACATATCTCAGAAGAGAAGCAAGAAGATAATTTCGACATGTTTGTTTCGTCGTTGAAGGTCAAACTTCCGTCAGCAGGAGAATTTTGTAGAGTCCAGCAAGAAGGTATTGGTGGTGATGGTGATGTGGAAGATGGGTTGAAGACTCCAACATCTTTGGATCACAAAATCACAGGAAGCCTGCAATGTCCACCAGCACCAAGAAAACCCAAATCACTACCACTAAAGAAGAGAAAAGCAATAATTGGCCCCAGAATTTTACTTGATCTTTCGATTGATGAGATCGAATCGTTGTTTCCTCCTGTTGATGATGTTCTTGCAGATCTTGGTAGTAAGATTATTATGAAGAAGAAAGTTAGAGTACAAGCAAGTGATGATCATATAGCATCAGCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

19.75

Weight (kDa)

5.14

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59360
fragaria_vesca	FvH4_3g35950
malus_domestica	MD03G1095400.v1.1 MD11G1110400.v1.1
prunus_persica	Prupe.6G078900_v2.0.a1
pyrus_communis	pycom03g07830 pycom11g09120
rosa_chinensis	RchiOBHm_Chr5g0064301
rosa_laevigata	RLG00000035714
rosa_multiflora	Rmu_sc0002695.1_g000011
rosa_roxburghii	Rroxscaffold_1G00016710
rosa_rugosa	Rorug05G0363900
rosa_samantha	Rh5AG421600 Rh5BG437400 Rh5CG460000 Rh5DG450600
rosa_wichuraiana	Rw5G039700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	74, 109
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	1 cut(s)	312
AcsI	RAATTY	4 cut(s)	50, 79, 227, 399
AfaI	GTAC	2 cut(s)	25, 507
AfiI	CCNNNNNNNGG	1 cut(s)	221
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	4 cut(s)	55, 79, 202, 286
AluBI	AGCT	1 cut(s)	536
AluI	AGCT	1 cut(s)	536
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	312
AoxI	GGCC	1 cut(s)	391
ApoI	RAATTY	4 cut(s)	50, 79, 227, 399
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	272, 278
BbsI	GAAGAC	3 cut(s)	123, 129, 293
BccI	CCATC	2 cut(s)	257, 272
BceAI	ACGGC	1 cut(s)	157
BclI	TGATCA	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	61
BglII	AGATCT	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	394
BmsI	GCATC	1 cut(s)	539
BpiI	GAAGAC	3 cut(s)	123, 129, 293
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	168
Bsh1236I	CGCG	2 cut(s)	74, 109
BshFI	GGCC	1 cut(s)	393
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	393
Bso31I	GGTCTC	1 cut(s)	61
Bsp143I	GATC	5 cut(s)	304, 409, 426, 466, 520
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	2 cut(s)	4, 167
BspFNI	CGCG	2 cut(s)	74, 109
BspLI	GGNNCC	1 cut(s)	394
BspPI	GGATC	1 cut(s)	312
BspTNI	GGTCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	5 cut(s)	304, 409, 426, 466, 520
BssT1I	CCWWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	2 cut(s)	153, 368
BstC8I	GCNNGC	2 cut(s)	97, 326
BstDEI	CTNAG	3 cut(s)	12, 61, 154
BstDSI	CCRYGG	1 cut(s)	45
BstFNI	CGCG	2 cut(s)	74, 109
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	5 cut(s)	307, 412, 429, 469, 523
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	5 cut(s)	304, 409, 426, 466, 520
BstNSI	RCATGY	1 cut(s)	187
BstUI	CGCG	2 cut(s)	74, 109
BstV2I	GAAGAC	3 cut(s)	123, 129, 293
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	393
BtgI	CCRYGG	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	97, 326
CfoI	GCGC	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	24, 506
CviAII	CATG	3 cut(s)	46, 92, 184
CviJI	RGCY	4 cut(s)	144, 324, 393, 536
CviKI_1	RGCY	4 cut(s)	144, 324, 393, 536
CviQI	GTAC	2 cut(s)	24, 506
DdeI	CTNAG	3 cut(s)	12, 61, 154
DpnI	GATC	5 cut(s)	306, 411, 428, 468, 522
DpnII	GATC	5 cut(s)	304, 409, 426, 466, 520
Eam1104I	CTCTTC	2 cut(s)	153, 368
EarI	CTCTTC	2 cut(s)	153, 368
Eco130I	CCWWGG	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	3 cut(s)	49, 95, 187
FaiI	YATR	7 cut(s)	47, 93, 150, 185, 488, 525, 527
FatI	CATG	3 cut(s)	45, 91, 183
FauI	CCCGC	1 cut(s)	79
FbaI	TGATCA	1 cut(s)	520
GlaI	GCGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	393
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	3 cut(s)	49, 95, 187
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HinfI	GANTC	3 cut(s)	237, 289, 431
HphI	GGTGA	2 cut(s)	272, 278
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	2 cut(s)	13, 157
Hpy8I	GTNNAC	1 cut(s)	335
Hpy99I	CGWCG	1 cut(s)	199
HpyAV	CCTTC	2 cut(s)	196, 242
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4V	TGCA	2 cut(s)	328, 464
HpyF3I	CTNAG	3 cut(s)	12, 61, 154
Hsp92II	CATG	3 cut(s)	49, 95, 187
HspAI	GCGC	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	5 cut(s)	304, 409, 426, 466, 520
LpnPI	CCDG	7 cut(s)	207, 254, 303, 338, 351, 409, 459
LweI	GCATC	1 cut(s)	539
MalI	GATC	5 cut(s)	306, 411, 428, 468, 522
MboI	GATC	5 cut(s)	304, 409, 426, 466, 520
MflI	RGATCY	1 cut(s)	466
MluCI	AATT	9 cut(s)	40, 50, 55, 79, 102, 175, 227, 387, 399
MlyI	GAGTC	2 cut(s)	246, 283
MmeI	TCCRAC	1 cut(s)	317
MnlI	CCTC	1 cut(s)	453
MseI	TTAA	2 cut(s)	39, 84
MvnI	CGCG	2 cut(s)	74, 109
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	5 cut(s)	304, 409, 426, 466, 520
NlaIII	CATG	3 cut(s)	49, 95, 187
NlaIV	GGNNCC	1 cut(s)	394
NspI	RCATGY	1 cut(s)	187
PciI	ACATGT	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	431
PleI	GAGTC	2 cut(s)	245, 283
PpsI	GAGTC	2 cut(s)	245, 283
PscI	ACATGT	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	466
RsaI	GTAC	2 cut(s)	25, 507
RsaNI	GTAC	2 cut(s)	24, 506
SaqAI	TTAA	2 cut(s)	39, 84
Sau3AI	GATC	5 cut(s)	304, 409, 426, 466, 520
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	2 cut(s)	246, 283
SetI	ASST	3 cut(s)	207, 253, 538
SfaNI	GCATC	1 cut(s)	539
Sse9I	AATT	9 cut(s)	40, 50, 55, 79, 102, 175, 227, 387, 399
SsiI	CCGC	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	35
TaqI	TCGA	3 cut(s)	180, 416, 429
TasI	AATT	9 cut(s)	40, 50, 55, 79, 102, 175, 227, 387, 399
TatI	WGTACW	1 cut(s)	505
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	2 cut(s)	39, 84
Tru9I	TTAA	2 cut(s)	39, 84
TspDTI	ATGAA	1 cut(s)	503
TspGWI	ACGGA	1 cut(s)	204
XapI	RAATTY	4 cut(s)	50, 79, 227, 399
XceI	RCATGY	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.