pycom11g09120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0014466
Physical Location & Seq
Forward (+)
7271829 .. 7272461
633 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g09120.1

Sequence Viewer

Length: 633 bp
ATGTACGCCAAGAGCTACAGCTTCTCCAAGTCAATTCCATTAATAATATCCATGGGCGGTGAGACCAAAATTAGTACTAATTCTCTCTCTCAAATGTTGGTTTCTGAGAAAAATGGTAGTGGTAACGGTCTTAATTCCATGGAATTCAATTTCTTAGTGAGACCCGCGTTGAATTTTAATAACCATGCGTGCCAAATTGCGCGTTGTGAAGACGAAGACAAAGGAGAAGATGACGGCTTACATATCTCTGAAGAGAAGCAAGAAGATAATTTCGACATGTTTGTTTCGTCGTTGAAGGTCAAACTTCCGTCAGCAGGAGAATTCTGTAGAGTCCAGCAAGAAGGTATTGGTGGTGATGGTGATGTGGAAGATGGGTTGAAGACTCCAACATCTTTGGATCACAAAATCACAGGAAGTCTGCAATGTCCACCAGCACCAAGAAAACCCAAATCACTACCACTAAAGAAGAGAAAAGCAATAATTGGCTCCAGAATTTTACTTGATCTATCGATTGATGAGATCGAATCGTTGTTTCCTCATGTTGATGATCTTGCAGATCTTGGTAGTAAGATTATTATGAAGAAGAAAGTTAGAGTACAAGCAAGTGATGATCATATAACATCAGCTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

22.99

Weight (kDa)

5.58

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014466)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59360
fragaria_vesca FvH4_3g35950
malus_domestica MD03G1095400.v1.1 MD11G1110400.v1.1
prunus_persica Prupe.6G078900_v2.0.a1
pyrus_communis pycom03g07830 pycom11g09120
rosa_chinensis RchiOBHm_Chr5g0064301
rosa_laevigata RLG00000035714
rosa_multiflora Rmu_sc0002695.1_g000011
rosa_roxburghii Rroxscaffold_1G00016710
rosa_rugosa Rorug05G0363900
rosa_samantha Rh5AG421600 Rh5BG437400 Rh5CG460000 Rh5DG450600
rosa_wichuraiana Rw5G039700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 167, 202
AciI CCGC 2 cut(s) 57, 165
AclWI GGATC 1 cut(s) 405
AcsI RAATTY 4 cut(s) 143, 172, 320, 492
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 3 cut(s) 5, 76, 597
AfiI CCNNNNNNNGG 1 cut(s) 314
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 4 cut(s) 148, 172, 295, 379
AluBI AGCT 3 cut(s) 15, 21, 626
AluI AGCT 3 cut(s) 15, 21, 626
Alw26I GTCTC 2 cut(s) 56, 154
AlwI GGATC 1 cut(s) 405
ApoI RAATTY 4 cut(s) 143, 172, 320, 492
AseI ATTAAT 1 cut(s) 41
AspLEI GCGC 1 cut(s) 202
AsuHPI GGTGA 3 cut(s) 71, 365, 371
BbsI GAAGAC 3 cut(s) 216, 222, 386
BccI CCATC 2 cut(s) 350, 365
BceAI ACGGC 1 cut(s) 250
BclI TGATCA 1 cut(s) 610
BcoDI GTCTC 2 cut(s) 56, 154
BfmI CTRYAG 2 cut(s) 16, 325
BglII AGATCT 1 cut(s) 556
BmcAI AGTACT 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 487
BpiI GAAGAC 3 cut(s) 216, 222, 386
BpmI CTGGAG 1 cut(s) 472
Bsa29I ATCGAT 1 cut(s) 509
BsaI GGTCTC 2 cut(s) 56, 154
BsaJI CCNNGG 2 cut(s) 51, 138
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 428
BseCI ATCGAT 1 cut(s) 509
BseDI CCNNGG 2 cut(s) 51, 138
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMI GCAATG 1 cut(s) 428
BseMII CTCAG 1 cut(s) 96
Bsh1236I CGCG 2 cut(s) 167, 202
BshVI ATCGAT 1 cut(s) 509
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 2 cut(s) 56, 154
Bso31I GGTCTC 2 cut(s) 56, 154
Bsp143I GATC 6 cut(s) 397, 502, 519, 547, 556, 610
Bsp19I CCATGG 2 cut(s) 51, 138
BspACI CCGC 2 cut(s) 57, 165
BspCNI CTCAG 1 cut(s) 97
BspDI ATCGAT 1 cut(s) 509
BspFNI CGCG 2 cut(s) 167, 202
BspLI GGNNCC 1 cut(s) 487
BspPI GGATC 1 cut(s) 405
BspTNI GGTCTC 2 cut(s) 56, 154
BsrDI GCAATG 1 cut(s) 428
BssECI CCNNGG 2 cut(s) 51, 138
BssMI GATC 6 cut(s) 397, 502, 519, 547, 556, 610
BssT1I CCWWGG 2 cut(s) 51, 138
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 2 cut(s) 246, 461
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 2 cut(s) 105, 154
BstDSI CCRYGG 2 cut(s) 51, 138
BstFNI CGCG 2 cut(s) 167, 202
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 6 cut(s) 400, 505, 522, 550, 559, 613
BstMAI GTCTC 2 cut(s) 56, 154
BstMBI GATC 6 cut(s) 397, 502, 519, 547, 556, 610
BstNSI RCATGY 1 cut(s) 280
BstSFI CTRYAG 2 cut(s) 16, 325
BstUI CGCG 2 cut(s) 167, 202
BstV2I GAAGAC 3 cut(s) 216, 222, 386
BstX2I RGATCY 1 cut(s) 556
BstYI RGATCY 1 cut(s) 556
Bsu15I ATCGAT 1 cut(s) 509
BsuTUI ATCGAT 1 cut(s) 509
BtgI CCRYGG 2 cut(s) 51, 138
Cac8I GCNNGC 1 cut(s) 190
CfoI GCGC 1 cut(s) 202
ClaI ATCGAT 1 cut(s) 509
Csp6I GTAC 3 cut(s) 4, 75, 596
CviAII CATG 5 cut(s) 52, 139, 185, 277, 539
CviJI RGCY 5 cut(s) 15, 21, 237, 486, 626
CviKI_1 RGCY 5 cut(s) 15, 21, 237, 486, 626
CviQI GTAC 3 cut(s) 4, 75, 596
DdeI CTNAG 2 cut(s) 105, 154
DpnI GATC 6 cut(s) 399, 504, 521, 549, 558, 612
DpnII GATC 6 cut(s) 397, 502, 519, 547, 556, 610
Eam1104I CTCTTC 2 cut(s) 246, 461
EarI CTCTTC 2 cut(s) 246, 461
Eco130I CCWWGG 2 cut(s) 51, 138
Eco31I GGTCTC 2 cut(s) 56, 154
Eco57I CTGAAG 1 cut(s) 270
EcoRI GAATTC 2 cut(s) 143, 320
EcoT14I CCWWGG 2 cut(s) 51, 138
ErhI CCWWGG 2 cut(s) 51, 138
FaeI CATG 5 cut(s) 55, 142, 188, 280, 542
FaiI YATR 9 cut(s) 53, 140, 186, 243, 278, 540, 578, 615, 617
FatI CATG 5 cut(s) 51, 138, 184, 276, 538
FauI CCCGC 1 cut(s) 172
FbaI TGATCA 1 cut(s) 610
GlaI GCGC 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 472
HhaI GCGC 1 cut(s) 202
Hin1II CATG 5 cut(s) 55, 142, 188, 280, 542
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HinfI GANTC 3 cut(s) 330, 382, 524
HphI GGTGA 3 cut(s) 71, 365, 371
Hpy166II GTNNAC 1 cut(s) 428
Hpy188I TCNGA 2 cut(s) 106, 250
Hpy188III TCNNGA 1 cut(s) 489
Hpy8I GTNNAC 1 cut(s) 428
Hpy99I CGWCG 1 cut(s) 292
HpyAV CCTTC 2 cut(s) 289, 335
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 2 cut(s) 421, 554
HpyF3I CTNAG 2 cut(s) 105, 154
Hsp92II CATG 5 cut(s) 55, 142, 188, 280, 542
HspAI GCGC 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 6 cut(s) 397, 502, 519, 547, 556, 610
LmnI GCTCC 1 cut(s) 491
LpnPI CCDG 5 cut(s) 300, 347, 396, 444, 502
MaeIII GTNAC 1 cut(s) 122
MalI GATC 6 cut(s) 399, 504, 521, 549, 558, 612
MboI GATC 6 cut(s) 397, 502, 519, 547, 556, 610
MflI RGATCY 1 cut(s) 556
MlyI GAGTC 2 cut(s) 339, 376
MmeI TCCRAC 1 cut(s) 410
MnlI CCTC 1 cut(s) 546
MseI TTAA 3 cut(s) 41, 132, 177
MslI CAYNNNNRTG 1 cut(s) 543
MvnI CGCG 2 cut(s) 167, 202
NcoI CCATGG 2 cut(s) 51, 138
NdeII GATC 6 cut(s) 397, 502, 519, 547, 556, 610
NlaIII CATG 5 cut(s) 55, 142, 188, 280, 542
NlaIV GGNNCC 1 cut(s) 487
NspI RCATGY 1 cut(s) 280
PciI ACATGT 1 cut(s) 276
PfeI GAWTC 1 cut(s) 524
PleI GAGTC 2 cut(s) 338, 376
PpsI GAGTC 2 cut(s) 338, 376
PscI ACATGT 1 cut(s) 276
PshBI ATTAAT 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 487
PsuI RGATCY 1 cut(s) 556
RsaI GTAC 3 cut(s) 5, 76, 597
RsaNI GTAC 3 cut(s) 4, 75, 596
RseI CAYNNNNRTG 1 cut(s) 543
SaqAI TTAA 3 cut(s) 41, 132, 177
Sau3AI GATC 6 cut(s) 397, 502, 519, 547, 556, 610
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 2 cut(s) 339, 376
SetI ASST 5 cut(s) 17, 23, 300, 346, 628
SfcI CTRYAG 2 cut(s) 16, 325
SmiMI CAYNNNNRTG 1 cut(s) 543
SsiI CCGC 2 cut(s) 57, 165
StyI CCWWGG 2 cut(s) 51, 138
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 3 cut(s) 273, 509, 522
TatI WGTACW 2 cut(s) 74, 595
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 3 cut(s) 41, 132, 177
Tru9I TTAA 3 cut(s) 41, 132, 177
TspDTI ATGAA 1 cut(s) 593
TspGWI ACGGA 1 cut(s) 297
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 4 cut(s) 143, 172, 320, 492
XceI RCATGY 1 cut(s) 280
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.