Rroxscaffold_1G00016710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014466
Physical Location & Seq
Forward (+)
20649427 .. 20650052
626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00016710.1

Sequence Viewer

Length: 489 bp
ATGTACACCGCGGAGTGCTACAAAGACTCAATACCTTCCTTCATGGTTGGCTACTCCGACTCGAAAACTGCTCAAATGTTGGTTTCTGATAAAGATGGTGGTGGTGCTCTCAATCTCAATCCTTGGAATTCAAACTCTTTGTTCGAGAGTTTGATGATAGGCAGGGGTGTCGAATTAAGCGCAGTCAAGATTCCATCTGCAGAAGAATCAAGAGGCCTCGAAGACGACGATGAAGGGCTGAAGACTCCTACATCTTTGGATCAGAAGATCATTGTGAACCTCAAGTCTCCACCAGGTGCACCAAGAAAACCAAAAGCACTACCACTAAAGAAGCGAAAAGCCAATCGCCACCCGAGACTTTTGCTTGATCTTTCGAGTGAGATTGAATTGTTGTTTCCTCCGGTTGTTTGTGCTGATCTTGGTGGTGGTAAGATTAAGAAAAATTCAAACAAGAAAGCTCCTAGTACTAATGATTGTATGACCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.53

Weight (kDa)

8.72

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014466)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59360
fragaria_vesca FvH4_3g35950
malus_domestica MD03G1095400.v1.1 MD11G1110400.v1.1
prunus_persica Prupe.6G078900_v2.0.a1
pyrus_communis pycom03g07830 pycom11g09120
rosa_chinensis RchiOBHm_Chr5g0064301
rosa_laevigata RLG00000035714
rosa_multiflora Rmu_sc0002695.1_g000011
rosa_roxburghii Rroxscaffold_1G00016710
rosa_rugosa Rorug05G0363900
rosa_samantha Rh5AG421600 Rh5BG437400 Rh5CG460000 Rh5DG450600
rosa_wichuraiana Rw5G039700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 11
AciI CCGC 2 cut(s) 9, 11
AclWI GGATC 1 cut(s) 267
AcsI RAATTY 2 cut(s) 127, 442
AcuI CTGAAG 1 cut(s) 260
AdeI CACNNNGTG 1 cut(s) 296
AfaI GTAC 2 cut(s) 5, 466
AgsI TTSAA 3 cut(s) 132, 386, 447
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 2 cut(s) 458, 486
AluI AGCT 2 cut(s) 458, 486
Alw21I GWGCWC 2 cut(s) 109, 301
Alw26I GTCTC 2 cut(s) 291, 349
Alw44I GTGCAC 1 cut(s) 297
AlwI GGATC 1 cut(s) 267
Ama87I CYCGRG 1 cut(s) 352
AoxI GGCC 1 cut(s) 214
ApaLI GTGCAC 1 cut(s) 297
ApoI RAATTY 2 cut(s) 127, 442
AspLEI GCGC 1 cut(s) 182
AvaI CYCGRG 1 cut(s) 352
BaeGI GKGCMC 1 cut(s) 301
BbsI GAAGAC 2 cut(s) 228, 248
Bbv12I GWGCWC 2 cut(s) 109, 301
BccI CCATC 2 cut(s) 89, 202
BcgI CGANNNNNNTGC 4 cut(s) 151, 185, 343, 377
BciT130I CCWGG 1 cut(s) 294
BcoDI GTCTC 2 cut(s) 291, 349
BfaI CTAG 2 cut(s) 462, 487
BfmI CTRYAG 1 cut(s) 198
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 1 cut(s) 294
BmeT110I CYCGRG 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 294
BpiI GAAGAC 2 cut(s) 228, 248
BpuEI CTTGAG 1 cut(s) 266
BsaJI CCNNGG 2 cut(s) 9, 122
BsaWI WCCGGW 1 cut(s) 400
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 9, 122
BseSI GKGCMC 1 cut(s) 301
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 1 cut(s) 216
BsiHKAI GWGCWC 2 cut(s) 109, 301
BsiHKCI CYCGRG 1 cut(s) 352
BsiSI CCGG 1 cut(s) 401
BsmAI GTCTC 2 cut(s) 291, 349
BsnI GGCC 1 cut(s) 216
BsoBI CYCGRG 1 cut(s) 352
Bsp1286I GDGCHC 2 cut(s) 109, 301
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 4 cut(s) 259, 267, 367, 415
BspACI CCGC 2 cut(s) 9, 11
BspANI GGCC 1 cut(s) 216
BspFNI CGCG 1 cut(s) 11
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 1 cut(s) 267
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 2 cut(s) 9, 122
BssMI GATC 4 cut(s) 259, 267, 367, 415
BssT1I CCWWGG 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 294
BstAUI TGTACA 1 cut(s) 3
BstDSI CCRYGG 1 cut(s) 9
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 4 cut(s) 262, 270, 370, 418
BstMAI GTCTC 2 cut(s) 291, 349
BstMBI GATC 4 cut(s) 259, 267, 367, 415
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 292
BstSFI CTRYAG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 301
BstUI CGCG 1 cut(s) 11
BstV2I GAAGAC 2 cut(s) 228, 248
BsuRI GGCC 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 9
CfoI GCGC 1 cut(s) 182
Cfr42I CCGCGG 1 cut(s) 12
CsiI ACCWGGT 1 cut(s) 292
Csp6I GTAC 2 cut(s) 4, 465
CviAII CATG 1 cut(s) 43
CviJI RGCY 6 cut(s) 51, 216, 238, 341, 458, 486
CviKI_1 RGCY 6 cut(s) 51, 216, 238, 341, 458, 486
CviQI GTAC 2 cut(s) 4, 465
DpnI GATC 4 cut(s) 261, 269, 369, 417
DpnII GATC 4 cut(s) 259, 267, 367, 415
DraIII CACNNNGTG 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 122
Eco147I AGGCCT 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 260
Eco88I CYCGRG 1 cut(s) 352
EcoRI GAATTC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
FaeI CATG 1 cut(s) 46
FaiI YATR 2 cut(s) 44, 479
FatI CATG 1 cut(s) 42
FspBI CTAG 2 cut(s) 462, 487
GlaI GCGC 1 cut(s) 181
HaeIII GGCC 1 cut(s) 216
HapII CCGG 1 cut(s) 401
HhaI GCGC 1 cut(s) 182
Hin1II CATG 1 cut(s) 46
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HinfI GANTC 5 cut(s) 26, 59, 190, 206, 244
HpaII CCGG 1 cut(s) 401
Hpy166II GTNNAC 3 cut(s) 6, 277, 299
Hpy188I TCNGA 3 cut(s) 58, 88, 264
Hpy188III TCNNGA 3 cut(s) 145, 187, 210
Hpy8I GTNNAC 3 cut(s) 6, 277, 299
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 3 cut(s) 45, 49, 227
HpyCH4V TGCA 2 cut(s) 200, 299
Hsp92II CATG 1 cut(s) 46
HspAI GCGC 1 cut(s) 180
KspI CCGCGG 1 cut(s) 12
Kzo9I GATC 4 cut(s) 259, 267, 367, 415
LmnI GCTCC 1 cut(s) 463
LpnPI CCDG 4 cut(s) 148, 279, 306, 414
MabI ACCWGGT 1 cut(s) 292
MaeI CTAG 2 cut(s) 462, 487
MalI GATC 4 cut(s) 261, 269, 369, 417
MboI GATC 4 cut(s) 259, 267, 367, 415
MboII GAAGA 4 cut(s) 215, 233, 253, 277
MhlI GDGCHC 2 cut(s) 109, 301
MluCI AATT 4 cut(s) 127, 173, 386, 442
MlyI GAGTC 3 cut(s) 20, 53, 238
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 4 cut(s) 206, 227, 290, 408
MseI TTAA 2 cut(s) 176, 435
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 1 cut(s) 11
NdeII GATC 4 cut(s) 259, 267, 367, 415
NlaIII CATG 1 cut(s) 46
PceI AGGCCT 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PfeI GAWTC 2 cut(s) 190, 206
PleI GAGTC 3 cut(s) 20, 53, 238
PpsI GAGTC 3 cut(s) 20, 53, 238
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PstI CTGCAG 1 cut(s) 202
RsaI GTAC 2 cut(s) 5, 466
RsaNI GTAC 2 cut(s) 4, 465
SacII CCGCGG 1 cut(s) 12
SaqAI TTAA 2 cut(s) 176, 435
Sau3AI GATC 4 cut(s) 259, 267, 367, 415
ScaI AGTACT 1 cut(s) 466
SchI GAGTC 3 cut(s) 20, 53, 238
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 2 cut(s) 109, 301
SetI ASST 5 cut(s) 37, 282, 298, 460, 488
SexAI ACCWGGT 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 198
Sfr303I CCGCGG 1 cut(s) 12
SgrBI CCGCGG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 4 cut(s) 127, 173, 386, 442
SseBI AGGCCT 1 cut(s) 216
SsiI CCGC 2 cut(s) 9, 11
SspMI CTAG 2 cut(s) 462, 487
StuI AGGCCT 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 1 cut(s) 122
TaqI TCGA 5 cut(s) 62, 144, 171, 219, 374
TasI AATT 4 cut(s) 127, 173, 386, 442
TatI WGTACW 2 cut(s) 3, 464
TfiI GAWTC 2 cut(s) 190, 206
Tru1I TTAA 2 cut(s) 176, 435
Tru9I TTAA 2 cut(s) 176, 435
TspDTI ATGAA 2 cut(s) 31, 246
VneI GTGCAC 1 cut(s) 297
XapI RAATTY 2 cut(s) 127, 442
XspI CTAG 2 cut(s) 462, 487
ZrmI AGTACT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.