Prupe.6G078900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014466
Physical Location & Seq
Forward (+)
5377032 .. 5378336
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G078900.1

Sequence Viewer

Length: 582 bp
ATGTACACGTACACCTTCTCCAAGTCAATTCCATTAATCATGGATGGCGAGACAAATATTAGCCCTCCTCCAAATTCTCAAATGTTGGTTTCTCAGAAAAATCATGGCCCTCTGAGCTCCATGGACTTCAATTTCTTGGTGAGACCCACGTTGGATTTCCATCGCCGCGAGTGCCAAACGTCACGTTGCAAAGACAAAGAAGAAGATGGAGGCCAATTACAAAGCTCAGAAGAGAAGCAAGAAGACAACTTCGACATGTTCGTTTCGTCTTTGAAGGTCCAAATTCCATCGGCAGGAGAATTCTGCAGGCTCCTCCAGCAAGACGATAATGTTGATGGCGTTCTGGATGATGAAGGGTTGAAGACTCCTACATCTTTGGATCACAAAATCACAATGAACCTCCAGTGTCCACCTGCGCCAAGAAAACCCAAGTCACTTCCGCTAAAGAAGCGAAAAGGAGCAGGCCACCCCAGAATTGTACTGCATCTATCGAGCGAGATCGAATCGCTGTTTCCTCCGGTGGATGATCTTCTTGCAGATGTTCATGTCGGTGGTAAGATTAAGAAGAAACTTAGAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.68

Weight (kDa)

6.59

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014466)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59360
fragaria_vesca FvH4_3g35950
malus_domestica MD03G1095400.v1.1 MD11G1110400.v1.1
prunus_persica Prupe.6G078900_v2.0.a1
pyrus_communis pycom03g07830 pycom11g09120
rosa_chinensis RchiOBHm_Chr5g0064301
rosa_laevigata RLG00000035714
rosa_multiflora Rmu_sc0002695.1_g000011
rosa_roxburghii Rroxscaffold_1G00016710
rosa_rugosa Rorug05G0363900
rosa_samantha Rh5AG421600 Rh5BG437400 Rh5CG460000 Rh5DG450600
rosa_wichuraiana Rw5G039700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 421
Acc36I ACCTGC 1 cut(s) 421
AccII CGCG 1 cut(s) 168
AciI CCGC 2 cut(s) 166, 440
AclWI GGATC 1 cut(s) 387
AcsI RAATTY 3 cut(s) 73, 282, 299
AfaI GTAC 3 cut(s) 5, 11, 480
AfiI CCNNNNNNNGG 1 cut(s) 293
AflIII ACRYGT 2 cut(s) 6, 255
AgsI TTSAA 3 cut(s) 130, 274, 361
AluBI AGCT 2 cut(s) 117, 225
AluI AGCT 2 cut(s) 117, 225
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 2 cut(s) 44, 136
AlwI GGATC 1 cut(s) 387
AoxI GGCC 3 cut(s) 106, 211, 463
ApoI RAATTY 3 cut(s) 73, 282, 299
AseI ATTAAT 1 cut(s) 35
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 2 cut(s) 107, 277
AsuHPI GGTGA 1 cut(s) 151
AvaII GGWCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 119
BbsI GAAGAC 2 cut(s) 249, 368
Bbv12I GWGCWC 1 cut(s) 119
BccI CCATC 5 cut(s) 38, 168, 200, 295, 329
BcoDI GTCTC 2 cut(s) 44, 136
BfmI CTRYAG 1 cut(s) 304
BfuAI ACCTGC 1 cut(s) 421
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 2 cut(s) 107, 277
BmiI GGNNCC 1 cut(s) 311
BmsI GCATC 1 cut(s) 493
BpiI GAAGAC 2 cut(s) 249, 368
BpmI CTGGAG 2 cut(s) 299, 386
BsaAI YACGTR 1 cut(s) 9
BsaBI GATNNNNATC 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 517
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 403
Bse8I GATNNNNATC 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 3 cut(s) 49, 352, 529
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 3 cut(s) 104, 107, 240
BseNI ACTGG 1 cut(s) 403
BseRI GAGGAG 2 cut(s) 57, 302
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 3 cut(s) 108, 213, 465
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 1 cut(s) 518
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 44, 136
BsnI GGCC 3 cut(s) 108, 213, 465
Bso31I GGTCTC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 119
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 379, 498, 526
Bsp19I CCATGG 1 cut(s) 120
BspACI CCGC 2 cut(s) 166, 440
BspANI GGCC 3 cut(s) 108, 213, 465
BspCNI CTCAG 3 cut(s) 105, 106, 239
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 311
BspMAI CTGCAG 1 cut(s) 308
BspMI ACCTGC 1 cut(s) 421
BspPI GGATC 1 cut(s) 387
BspTNI GGTCTC 1 cut(s) 136
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 403
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 3 cut(s) 379, 498, 526
BssT1I CCWWGG 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 225
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 9
BstC8I GCNNGC 2 cut(s) 308, 463
BstDEI CTNAG 4 cut(s) 93, 113, 226, 572
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 3 cut(s) 49, 352, 529
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 3 cut(s) 382, 501, 529
BstMAI GTCTC 2 cut(s) 44, 136
BstMBI GATC 3 cut(s) 379, 498, 526
BstMWI GCNNNNNNNGC 4 cut(s) 114, 171, 316, 448
BstNSI RCATGY 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 304
BstUI CGCG 1 cut(s) 168
BstV2I GAAGAC 2 cut(s) 249, 368
BsuRI GGCC 3 cut(s) 108, 213, 465
BtgI CCRYGG 1 cut(s) 120
BtgZI GCGATG 1 cut(s) 146
BtsCI GGATG 3 cut(s) 49, 352, 529
BtsIMutI CAGTG 1 cut(s) 410
BveI ACCTGC 1 cut(s) 421
Cac8I GCNNGC 2 cut(s) 308, 463
CfoI GCGC 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 107, 277
Csp6I GTAC 3 cut(s) 4, 10, 479
CviAII CATG 5 cut(s) 40, 104, 121, 256, 545
CviJI RGCY 7 cut(s) 63, 108, 117, 213, 225, 310, 465
CviKI_1 RGCY 7 cut(s) 63, 108, 117, 213, 225, 310, 465
CviQI GTAC 3 cut(s) 4, 10, 479
DdeI CTNAG 4 cut(s) 93, 113, 226, 572
DpnI GATC 3 cut(s) 381, 500, 528
DpnII GATC 3 cut(s) 379, 498, 526
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 117
EcoRI GAATTC 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 5 cut(s) 43, 107, 124, 259, 548
FaiI YATR 5 cut(s) 41, 105, 122, 257, 546
FatI CATG 5 cut(s) 39, 103, 120, 255, 544
Fnu4HI GCNGC 1 cut(s) 166
FokI GGATG 3 cut(s) 56, 359, 536
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 166
GlaI GCGC 1 cut(s) 417
GluI GCNGC 1 cut(s) 166
GsuI CTGGAG 2 cut(s) 299, 386
HaeIII GGCC 3 cut(s) 108, 213, 465
HapII CCGG 1 cut(s) 518
HhaI GCGC 1 cut(s) 418
Hin1II CATG 5 cut(s) 43, 107, 124, 259, 548
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HinfI GANTC 2 cut(s) 364, 503
HpaII CCGG 1 cut(s) 518
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 3 cut(s) 6, 12, 410
Hpy188I TCNGA 3 cut(s) 96, 114, 229
Hpy188III TCNNGA 1 cut(s) 344
Hpy8I GTNNAC 3 cut(s) 6, 12, 410
HpyAV CCTTC 3 cut(s) 25, 268, 347
HpyCH4IV ACGT 4 cut(s) 8, 149, 179, 184
HpyCH4V TGCA 4 cut(s) 189, 306, 484, 536
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 171, 316, 448
HpyF3I CTNAG 4 cut(s) 93, 113, 226, 572
HpySE526I ACGT 4 cut(s) 8, 149, 179, 184
Hsp92II CATG 5 cut(s) 43, 107, 124, 259, 548
HspAI GCGC 1 cut(s) 416
Kzo9I GATC 3 cut(s) 379, 498, 526
LmnI GCTCC 3 cut(s) 122, 315, 458
LpnPI CCDG 9 cut(s) 279, 292, 329, 329, 416, 426, 447, 484, 531
LweI GCATC 1 cut(s) 493
MaeII ACGT 4 cut(s) 8, 149, 179, 184
MaeIII GTNAC 2 cut(s) 180, 432
MalI GATC 3 cut(s) 381, 500, 528
MboI GATC 3 cut(s) 379, 498, 526
MboII GAAGA 7 cut(s) 212, 215, 242, 254, 373, 521, 577
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 7 cut(s) 27, 73, 130, 215, 282, 299, 474
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 7 cut(s) 75, 78, 120, 203, 323, 410, 525
MseI TTAA 2 cut(s) 35, 561
MslI CAYNNNNRTG 1 cut(s) 549
MspI CCGG 1 cut(s) 518
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 4 cut(s) 114, 171, 316, 448
NcoI CCATGG 1 cut(s) 120
NdeII GATC 3 cut(s) 379, 498, 526
NlaIII CATG 5 cut(s) 43, 107, 124, 259, 548
NlaIV GGNNCC 1 cut(s) 311
NmuCI GTSAC 2 cut(s) 180, 432
NspI RCATGY 1 cut(s) 259
PaqCI CACCTGC 1 cut(s) 421
PciI ACATGT 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PfeI GAWTC 1 cut(s) 503
PkrI GCNGC 1 cut(s) 167
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
Ppu21I YACGTR 1 cut(s) 9
PscI ACATGT 1 cut(s) 255
PshBI ATTAAT 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 2 cut(s) 107, 277
PstI CTGCAG 1 cut(s) 308
RsaI GTAC 3 cut(s) 5, 11, 480
RsaNI GTAC 3 cut(s) 4, 10, 479
RseI CAYNNNNRTG 1 cut(s) 549
SacI GAGCTC 1 cut(s) 119
SaqAI TTAA 2 cut(s) 35, 561
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 3 cut(s) 379, 498, 526
Sau96I GGNCC 2 cut(s) 107, 277
SchI GAGTC 1 cut(s) 358
SduI GDGCHC 1 cut(s) 119
SfaNI GCATC 1 cut(s) 493
SfcI CTRYAG 1 cut(s) 304
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 549
Sse9I AATT 7 cut(s) 27, 73, 130, 215, 282, 299, 474
SsiI CCGC 2 cut(s) 166, 440
SspI AATATT 1 cut(s) 58
SstI GAGCTC 1 cut(s) 119
StyI CCWWGG 1 cut(s) 120
TaiI ACGT 4 cut(s) 11, 152, 182, 187
TaqI TCGA 3 cut(s) 252, 491, 501
TasI AATT 7 cut(s) 27, 73, 130, 215, 282, 299, 474
TatI WGTACW 2 cut(s) 3, 478
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 2 cut(s) 35, 561
Tru9I TTAA 2 cut(s) 35, 561
TscAI CASTG 1 cut(s) 410
TseFI GTSAC 2 cut(s) 180, 432
Tsp45I GTSAC 2 cut(s) 180, 432
TspDTI ATGAA 3 cut(s) 366, 410, 533
TspRI CASTG 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 277
VspI ATTAAT 1 cut(s) 35
XapI RAATTY 3 cut(s) 73, 282, 299
XceI RCATGY 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.