pycom03g07830

cyclin-dependent protein kinase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0014466
Physical Location & Seq
Forward (+)
6204328 .. 6204909
582 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g07830.1

Sequence Viewer

Length: 582 bp
ATGGGGGGTGAGACCAAAATTAGTACTAATTCTCACTCGCAAATGTTGGTTTCTGAGAAAAATGGTACTAATCATGGTCGTAGTCCCATGGAATTCAATTTCTTAGTGAGACCCGCATTGAATTTCAATAATCATGCATGCCAAATTGCTCGTTGTGAAGACGAAGAAGAAGATGGAGACGGCCAATTACATAGCTCAGAGGAGAAGCAAGAAGATAATTTCGACATGTTTGTGTCATCGTTGAAGGTCAAAGTTCCTTCAGCTGGAGAATTCTGTAGAGTCCAGCAAGAAGGTATTGGTGATGATGGGGACGTGGAATATGGGTTGAAGACTCCAACATCTTTGGATCACAAAATCAAAGGGAGCCTGCAATGTCCACCAGCACCAAGAAAACCCAAATCACTTCCACTAAAGAAGAGAAAAGCAATACTTGACCCCAGAATTTTTCTTGATTTTTCAAGTGATGAGATCGAATCGTTGTTTCCTCCGGTTGATGGTGTTCTTGCAGATCTTGGTAGTAAGATTATCATGAAGAAGAAAGTTAGAGTACAAGCAAGTGAAGATCACGATCATATAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.45

Weight (kDa)

5.51

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014466)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59360
fragaria_vesca FvH4_3g35950
malus_domestica MD03G1095400.v1.1 MD11G1110400.v1.1
prunus_persica Prupe.6G078900_v2.0.a1
pyrus_communis pycom03g07830 pycom11g09120
rosa_chinensis RchiOBHm_Chr5g0064301
rosa_laevigata RLG00000035714
rosa_multiflora Rmu_sc0002695.1_g000011
rosa_roxburghii Rroxscaffold_1G00016710
rosa_rugosa Rorug05G0363900
rosa_samantha Rh5AG421600 Rh5BG437400 Rh5CG460000 Rh5DG450600
rosa_wichuraiana Rw5G039700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 114
AclWI GGATC 1 cut(s) 354
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 4 cut(s) 92, 121, 269, 441
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 3 cut(s) 25, 67, 549
AfiI CCNNNNNNNGG 2 cut(s) 263, 494
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 6 cut(s) 97, 121, 127, 244, 328, 459
AjiI CACGTC 1 cut(s) 313
AluBI AGCT 2 cut(s) 195, 263
AluI AGCT 2 cut(s) 195, 263
Alw26I GTCTC 3 cut(s) 5, 103, 171
AlwI GGATC 1 cut(s) 354
AoxI GGCC 1 cut(s) 181
ApoI RAATTY 4 cut(s) 92, 121, 269, 441
AsuHPI GGTGA 2 cut(s) 20, 311
BbsI GAAGAC 2 cut(s) 165, 335
BccI CCATC 3 cut(s) 167, 299, 488
BceAI ACGGC 1 cut(s) 196
BcoDI GTCTC 3 cut(s) 5, 103, 171
BfmI CTRYAG 1 cut(s) 274
BglII AGATCT 1 cut(s) 508
BmcAI AGTACT 1 cut(s) 25
BmgBI CACGTC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 365
BpiI GAAGAC 2 cut(s) 165, 335
BpmI CTGGAG 1 cut(s) 285
BsaBI GATNNNNATC 1 cut(s) 567
BsaI GGTCTC 2 cut(s) 5, 103
BsaJI CCNNGG 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 487
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 494
Bse3DI GCAATG 1 cut(s) 377
Bse8I GATNNNNATC 1 cut(s) 567
BseDI CCNNGG 1 cut(s) 87
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 2 cut(s) 263, 494
BseMI GCAATG 1 cut(s) 377
BseMII CTCAG 2 cut(s) 45, 210
BseRI GAGGAG 1 cut(s) 215
BshFI GGCC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 488
BslFI GGGAC 2 cut(s) 69, 323
BslI CCNNNNNNNGG 2 cut(s) 263, 494
BsmAI GTCTC 3 cut(s) 5, 103, 171
BsmBI CGTCTC 1 cut(s) 171
BsmFI GGGAC 2 cut(s) 69, 323
BsnI GGCC 1 cut(s) 183
Bso31I GGTCTC 2 cut(s) 5, 103
Bsp143I GATC 5 cut(s) 346, 468, 508, 562, 568
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 2 cut(s) 46, 209
BspHI TCATGA 1 cut(s) 528
BspLI GGNNCC 1 cut(s) 365
BspPI GGATC 1 cut(s) 354
BspTNI GGTCTC 2 cut(s) 5, 103
BsrDI GCAATG 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 5 cut(s) 346, 468, 508, 562, 568
BssT1I CCWWGG 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 410
BstC8I GCNNGC 2 cut(s) 139, 368
BstDEI CTNAG 3 cut(s) 54, 103, 196
BstDSI CCRYGG 1 cut(s) 87
BstKTI GATC 5 cut(s) 349, 471, 511, 565, 571
BstMAI GTCTC 3 cut(s) 5, 103, 171
BstMBI GATC 5 cut(s) 346, 468, 508, 562, 568
BstNSI RCATGY 2 cut(s) 141, 229
BstSFI CTRYAG 1 cut(s) 274
BstV2I GAAGAC 2 cut(s) 165, 335
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
BsuRI GGCC 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 87
BtrI CACGTC 1 cut(s) 313
Cac8I GCNNGC 2 cut(s) 139, 368
CciI TCATGA 1 cut(s) 528
Csp6I GTAC 3 cut(s) 24, 66, 548
CviAII CATG 6 cut(s) 74, 88, 134, 138, 226, 529
CviJI RGCY 4 cut(s) 183, 195, 263, 366
CviKI_1 RGCY 4 cut(s) 183, 195, 263, 366
CviQI GTAC 3 cut(s) 24, 66, 548
DdeI CTNAG 3 cut(s) 54, 103, 196
DpnI GATC 5 cut(s) 348, 470, 510, 564, 570
DpnII GATC 5 cut(s) 346, 468, 508, 562, 568
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 87
Eco31I GGTCTC 2 cut(s) 5, 103
Eco57I CTGAAG 1 cut(s) 243
EcoRI GAATTC 2 cut(s) 92, 269
EcoT14I CCWWGG 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 6 cut(s) 77, 91, 137, 141, 229, 532
FalI AAGNNNNNCTT 2 cut(s) 414, 446
FaqI GGGAC 2 cut(s) 69, 323
FatI CATG 6 cut(s) 73, 87, 133, 137, 225, 528
FauI CCCGC 1 cut(s) 121
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 1 cut(s) 183
HapII CCGG 1 cut(s) 488
Hin1II CATG 6 cut(s) 77, 91, 137, 141, 229, 532
HinfI GANTC 3 cut(s) 279, 331, 473
HpaII CCGG 1 cut(s) 488
HphI GGTGA 2 cut(s) 20, 311
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 2 cut(s) 55, 199
Hpy188III TCNNGA 3 cut(s) 449, 529, 566
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 3 cut(s) 238, 267, 284
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 3 cut(s) 137, 370, 506
HpyF3I CTNAG 3 cut(s) 54, 103, 196
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 6 cut(s) 77, 91, 137, 141, 229, 532
Kzo9I GATC 5 cut(s) 346, 468, 508, 562, 568
LmnI GCTCC 1 cut(s) 363
LpnPI CCDG 6 cut(s) 249, 296, 380, 393, 451, 501
MaeII ACGT 1 cut(s) 312
MalI GATC 5 cut(s) 348, 470, 510, 564, 570
MboI GATC 5 cut(s) 346, 468, 508, 562, 568
MflI RGATCY 1 cut(s) 508
MlyI GAGTC 2 cut(s) 288, 325
MmeI TCCRAC 1 cut(s) 359
MnlI CCTC 2 cut(s) 193, 495
Mph1103I ATGCAT 1 cut(s) 139
MslI CAYNNNNRTG 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 1 cut(s) 488
NcoI CCATGG 1 cut(s) 87
NdeII GATC 5 cut(s) 346, 468, 508, 562, 568
NlaIII CATG 6 cut(s) 77, 91, 137, 141, 229, 532
NlaIV GGNNCC 1 cut(s) 365
NsiI ATGCAT 1 cut(s) 139
NspI RCATGY 2 cut(s) 141, 229
PaeI GCATGC 1 cut(s) 141
PagI TCATGA 1 cut(s) 528
PciI ACATGT 1 cut(s) 225
PfeI GAWTC 1 cut(s) 473
PleI GAGTC 2 cut(s) 287, 325
PpsI GAGTC 2 cut(s) 287, 325
PscI ACATGT 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 365
PsuI RGATCY 1 cut(s) 508
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 3 cut(s) 25, 67, 549
RsaNI GTAC 3 cut(s) 24, 66, 548
RseI CAYNNNNRTG 1 cut(s) 230
Sau3AI GATC 5 cut(s) 346, 468, 508, 562, 568
ScaI AGTACT 1 cut(s) 25
SchI GAGTC 2 cut(s) 288, 325
SetI ASST 5 cut(s) 197, 249, 265, 295, 315
SfcI CTRYAG 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 230
SphI GCATGC 1 cut(s) 141
SsiI CCGC 1 cut(s) 114
StyI CCWWGG 1 cut(s) 87
TaiI ACGT 1 cut(s) 315
TaqI TCGA 2 cut(s) 222, 471
TatI WGTACW 2 cut(s) 23, 547
TfiI GAWTC 1 cut(s) 473
TspDTI ATGAA 1 cut(s) 545
XapI RAATTY 4 cut(s) 92, 121, 269, 441
XceI RCATGY 2 cut(s) 141, 229
ZrmI AGTACT 1 cut(s) 25
Zsp2I ATGCAT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.