Rmu_sc0002695.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002695.1
OG0014466
Physical Location & Seq
Reverse (-)
31848 .. 32450
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002695.1_g000011.1.cds

Sequence Viewer

Length: 603 bp
atgtacacggcggagtgctacaaagactcaataccttccttcatggttggctactccgactcgaaaactgctcaaatgttggtttctgataaagatggtgatggtgctctcaatctcaatcccttggaattcaaactctttgttcgagagtttgatgataggcaagggtgtcgaattaagagcagtaattcagaaagagatgataaagaagaagaagatcatgatgattcagaggttcatcaacgagaggaggaagaccaagtaaaaagtcaagaagaaaagcaagaagacaactttgacatgtttgttacgtccttgaaggtcaagattccatctgcagaagaatcaagaggccccgaagacgacaatgaagggctgaagactcctacatctttggatcagaagatcattgtgagcctcaagtctccaccaggtgcaccaagaaaaccaaaagcactaccactaaagaagcgaaaagccaatcgccacccgagacttttgcttgatctttcgagtgagattgaattgttgtttcctccggttgtttgtcctgatcttggtggtggtaagattaagaaaaaatccagacaagaaagctcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.63

Weight (kDa)

5.11

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014466)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59360
fragaria_vesca FvH4_3g35950
malus_domestica MD03G1095400.v1.1 MD11G1110400.v1.1
prunus_persica Prupe.6G078900_v2.0.a1
pyrus_communis pycom03g07830 pycom11g09120
rosa_chinensis RchiOBHm_Chr5g0064301
rosa_laevigata RLG00000035714
rosa_multiflora Rmu_sc0002695.1_g000011
rosa_roxburghii Rroxscaffold_1G00016710
rosa_rugosa Rorug05G0363900
rosa_samantha Rh5AG421600 Rh5BG437400 Rh5CG460000 Rh5DG450600
rosa_wichuraiana Rw5G039700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 11
AclWI GGATC 1 cut(s) 405
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 398
AdeI CACNNNGTG 1 cut(s) 434
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 557
AflIII ACRYGT 1 cut(s) 300
AgsI TTSAA 3 cut(s) 133, 319, 524
AjnI CCWGG 1 cut(s) 430
AluBI AGCT 1 cut(s) 597
AluI AGCT 1 cut(s) 597
Alw21I GWGCWC 2 cut(s) 109, 439
Alw26I GTCTC 2 cut(s) 429, 487
Alw44I GTGCAC 1 cut(s) 435
AlwI GGATC 1 cut(s) 405
Ama87I CYCGRG 1 cut(s) 490
AoxI GGCC 1 cut(s) 352
ApaLI GTGCAC 1 cut(s) 435
ApoI RAATTY 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 353
AsuHPI GGTGA 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 490
BaeGI GKGCMC 1 cut(s) 439
BbsI GAAGAC 4 cut(s) 261, 294, 366, 386
Bbv12I GWGCWC 2 cut(s) 109, 439
BccI CCATC 3 cut(s) 89, 95, 340
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 4 cut(s) 152, 186, 481, 515
BciT130I CCWGG 1 cut(s) 432
BcoDI GTCTC 2 cut(s) 429, 487
BfaI CTAG 1 cut(s) 601
BfmI CTRYAG 1 cut(s) 336
Bme1390I CCNGG 1 cut(s) 432
BmeT110I CYCGRG 1 cut(s) 490
BmgT120I GGNCC 1 cut(s) 353
BmiI GGNNCC 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 432
BpiI GAAGAC 4 cut(s) 261, 294, 366, 386
BpuEI CTTGAG 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 538
Bsc4I CCNNNNNNNGG 1 cut(s) 557
BseBI CCWGG 1 cut(s) 432
BseDI CCNNGG 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 557
BseRI GAGGAG 1 cut(s) 263
BseSI GKGCMC 1 cut(s) 439
BshFI GGCC 1 cut(s) 354
BsiHKAI GWGCWC 2 cut(s) 109, 439
BsiHKCI CYCGRG 1 cut(s) 490
BsiSI CCGG 1 cut(s) 539
BslI CCNNNNNNNGG 1 cut(s) 557
BsmAI GTCTC 2 cut(s) 429, 487
BsnI GGCC 1 cut(s) 354
BsoBI CYCGRG 1 cut(s) 490
Bsp1286I GDGCHC 2 cut(s) 109, 439
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 5 cut(s) 217, 397, 405, 505, 553
BspACI CCGC 1 cut(s) 11
BspANI GGCC 1 cut(s) 354
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 355
BspMAI CTGCAG 1 cut(s) 340
BspPI GGATC 1 cut(s) 405
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 5 cut(s) 217, 397, 405, 505, 553
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 432
BstAUI TGTACA 1 cut(s) 3
BstKTI GATC 5 cut(s) 220, 400, 408, 508, 556
BstMAI GTCTC 2 cut(s) 429, 487
BstMBI GATC 5 cut(s) 217, 397, 405, 505, 553
BstNI CCWGG 1 cut(s) 432
BstNSI RCATGY 1 cut(s) 304
BstSCI CCNGG 1 cut(s) 430
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 439
BstV2I GAAGAC 4 cut(s) 261, 294, 366, 386
BsuRI GGCC 1 cut(s) 354
CciI TCATGA 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 353
CsiI ACCWGGT 1 cut(s) 430
Csp6I GTAC 1 cut(s) 4
CviAII CATG 3 cut(s) 43, 221, 301
CviJI RGCY 6 cut(s) 51, 354, 376, 417, 479, 597
CviKI_1 RGCY 6 cut(s) 51, 354, 376, 417, 479, 597
CviQI GTAC 1 cut(s) 4
DpnI GATC 5 cut(s) 219, 399, 407, 507, 555
DpnII GATC 5 cut(s) 217, 397, 405, 505, 553
DraIII CACNNNGTG 1 cut(s) 434
EciI GGCGGA 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 398
Eco88I CYCGRG 1 cut(s) 490
EcoO109I RGGNCCY 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 3 cut(s) 46, 224, 304
FaiI YATR 3 cut(s) 44, 222, 302
FatI CATG 3 cut(s) 42, 220, 300
FspBI CTAG 1 cut(s) 601
HaeIII GGCC 1 cut(s) 354
HapII CCGG 1 cut(s) 539
Hin1II CATG 3 cut(s) 46, 224, 304
HinfI GANTC 6 cut(s) 26, 59, 227, 328, 344, 382
HpaII CCGG 1 cut(s) 539
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 6, 437
Hpy188I TCNGA 5 cut(s) 58, 88, 193, 232, 402
Hpy188III TCNNGA 7 cut(s) 146, 221, 272, 325, 348, 551, 585
Hpy8I GTNNAC 2 cut(s) 6, 437
HpyAV CCTTC 4 cut(s) 45, 49, 313, 365
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 2 cut(s) 338, 437
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 3 cut(s) 46, 224, 304
Kzo9I GATC 5 cut(s) 217, 397, 405, 505, 553
LmnI GCTCC 1 cut(s) 602
LpnPI CCDG 5 cut(s) 417, 444, 552, 564, 598
MabI ACCWGGT 1 cut(s) 430
MaeI CTAG 1 cut(s) 601
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 307
MalI GATC 5 cut(s) 219, 399, 407, 507, 555
MboI GATC 5 cut(s) 217, 397, 405, 505, 553
MhlI GDGCHC 2 cut(s) 109, 439
MluCI AATT 4 cut(s) 128, 174, 187, 524
MlyI GAGTC 3 cut(s) 20, 53, 376
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 6 cut(s) 226, 241, 244, 344, 428, 546
MseI TTAA 2 cut(s) 177, 573
MspI CCGG 1 cut(s) 539
MspR9I CCNGG 1 cut(s) 432
MvaI CCWGG 1 cut(s) 432
NdeII GATC 5 cut(s) 217, 397, 405, 505, 553
NlaIII CATG 3 cut(s) 46, 224, 304
NlaIV GGNNCC 1 cut(s) 355
NspI RCATGY 1 cut(s) 304
PagI TCATGA 1 cut(s) 220
PciI ACATGT 1 cut(s) 300
PfeI GAWTC 3 cut(s) 227, 328, 344
PleI GAGTC 3 cut(s) 20, 53, 376
PpsI GAGTC 3 cut(s) 20, 53, 376
PscI ACATGT 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 430
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 1 cut(s) 353
PstI CTGCAG 1 cut(s) 340
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 177, 573
Sau3AI GATC 5 cut(s) 217, 397, 405, 505, 553
Sau96I GGNCC 1 cut(s) 353
SchI GAGTC 3 cut(s) 20, 53, 376
ScrFI CCNGG 1 cut(s) 432
SduI GDGCHC 2 cut(s) 109, 439
SetI ASST 6 cut(s) 37, 237, 314, 324, 436, 599
SexAI ACCWGGT 1 cut(s) 430
SfcI CTRYAG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 4 cut(s) 128, 174, 187, 524
SsiI CCGC 1 cut(s) 11
SspMI CTAG 1 cut(s) 601
StyD4I CCNGG 1 cut(s) 430
StyI CCWWGG 1 cut(s) 123
TaiI ACGT 1 cut(s) 314
TaqI TCGA 4 cut(s) 62, 145, 172, 512
TasI AATT 4 cut(s) 128, 174, 187, 524
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 3 cut(s) 227, 328, 344
Tru1I TTAA 2 cut(s) 177, 573
Tru9I TTAA 2 cut(s) 177, 573
TspDTI ATGAA 3 cut(s) 31, 227, 384
VneI GTGCAC 1 cut(s) 435
XapI RAATTY 1 cut(s) 128
XceI RCATGY 1 cut(s) 304
XspI CTAG 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.