FvH4_3g37030

RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
31767952 .. 31770658
2707 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37030.t1

Sequence Viewer

Length: 888 bp
ATGGCTTTAGTGCGACCAGGCTCAGCCAACCAACCGGCGAAGATCCGATGGGGCGAGCTCGACGAGGACGACGGCGAGGACCTGGACTTCCTCCTGCCGCCGAAGCAGGTGATTGGGCCCGACGAGAACGGCATCAAGAAGGTGATTGAATACAAATTCAACGACGAGGGCAATAAGGTCAAGATCACCACCATCACTCGCACACGGAAGCTCGCCAACGCTCGCCTGAGCAAGCGCGCCGTCGAGCGCCGCTCCTGGCCCAAATTCGGCGACGCCGTTCATGAGGACGTCGGCGCCAGGCTCACCATGGTCTCCACTGAAGAGATCCTCCTTGAACGCCCTAGGGCTCTTGGTACCAAGGCAGAAGAAACGAAGAACGCAGGAGACTCTTTGGCACAACTTGGCAAAGGAGGGACTAGTCTCAAGCTTTGTAGGGTATGTGGTAAGAAGGGTGACCACTGGAGTGCACAGTGCCCATACAAAGATCTTGCCCCACAGACAGGCGCTTTTAGTGATAAAGCTCCTACATCAGATGCAACAAGTGCAGTTCCTGGCTCTGGCAAGAGTACATATGTTCCTCCAGGCTTAAGAGCAGGGGCAGAGAGGACTGGAACTGATATGAGACGAAGGAATGATGAGAATTCTGTTCGTGTCACCAACCTATCTGAGGATACACGAGAGCCTGATTTGCTTGAACTTTTCAGACCTTTTGGTGCCGTTAGCCGTGTTTATGTTGCTCTTGATAAAGACACCCAAGTTAGCAGAGGATTTGGTTTTGTTAACTTTGTGAACAGGGAAGATGCCCAAAGAGCCATCAACAAATTGAATGGTTATGGTTATGATAATCTCATCCTCCGGGTTGAATGGGCCACACCCAGGGCGAATTAG

Protein Analysis

296

Amino Acids

32.55

Weight (kDa)

9.0

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF3g PF12353 36 - 163 9.5e-32 Eukaryotic translation initiation factor 3 subunit G
RRM_1 PF00076 216 - 282 2.3e-19 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 97
AatII GACGTC 1 cut(s) 291
Acc36I ACCTGC 1 cut(s) 97
Acc65I GGTACC 1 cut(s) 353
AccB1I GGYRCC 3 cut(s) 293, 353, 713
AccBSI CCGCTC 1 cut(s) 252
AccII CGCG 1 cut(s) 237
AciI CCGC 2 cut(s) 98, 250
AclWI GGATC 2 cut(s) 37, 319
AcsI RAATTY 3 cut(s) 155, 263, 640
AcuI CTGAAG 1 cut(s) 339
AcyI GRCGYC 3 cut(s) 273, 288, 294
AfaI GTAC 2 cut(s) 355, 568
AfiI CCNNNNNNNGG 5 cut(s) 266, 500, 557, 667, 876
AflII CTTAAG 1 cut(s) 586
AgsI TTSAA 6 cut(s) 149, 160, 335, 695, 826, 863
AhlI ACTAGT 1 cut(s) 416
AjnI CCWGG 7 cut(s) 16, 81, 254, 296, 550, 580, 875
AleI CACNNNNGTG 1 cut(s) 462
AluBI AGCT 4 cut(s) 58, 211, 427, 521
AluI AGCT 4 cut(s) 58, 211, 427, 521
Alw21I GWGCWC 2 cut(s) 60, 469
Alw26I GTCTC 4 cut(s) 316, 378, 425, 616
Alw44I GTGCAC 1 cut(s) 465
AlwI GGATC 2 cut(s) 37, 319
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 3 cut(s) 116, 257, 867
ApaI GGGCCC 1 cut(s) 120
ApaLI GTGCAC 1 cut(s) 465
ApoI RAATTY 3 cut(s) 155, 263, 640
Asp718I GGTACC 1 cut(s) 353
AspA2I CCTAGG 1 cut(s) 341
AspLEI GCGC 5 cut(s) 237, 239, 249, 296, 506
AspS9I GGNCC 5 cut(s) 79, 116, 117, 258, 867
AsuC2I CCSGG 1 cut(s) 857
AsuHPI GGTGA 6 cut(s) 121, 154, 178, 295, 464, 646
AvaII GGWCC 1 cut(s) 79
AvrII CCTAGG 1 cut(s) 341
BaeGI GKGCMC 3 cut(s) 120, 469, 476
BanI GGYRCC 3 cut(s) 293, 353, 713
BanII GRGCYC 3 cut(s) 60, 120, 349
BauI CACGAG 1 cut(s) 675
Bbv12I GWGCWC 2 cut(s) 60, 469
BccI CCATC 3 cut(s) 42, 200, 821
BceAI ACGGC 6 cut(s) 88, 145, 224, 260, 701, 708
BciT130I CCWGG 7 cut(s) 18, 83, 256, 298, 552, 582, 877
BciVI GTATCC 1 cut(s) 664
BcnI CCSGG 1 cut(s) 857
BcoDI GTCTC 4 cut(s) 316, 378, 425, 616
BcuI ACTAGT 1 cut(s) 416
BfaI CTAG 2 cut(s) 342, 417
BfoI RGCGCY 3 cut(s) 250, 297, 507
BfrI CTTAAG 1 cut(s) 586
BfuAI ACCTGC 1 cut(s) 97
BfuI GTATCC 1 cut(s) 664
BglII AGATCT 1 cut(s) 484
BisI GCNGC 2 cut(s) 98, 250
BlnI CCTAGG 1 cut(s) 341
BlpI GCTNAGC 1 cut(s) 22
BlsI GCNGC 2 cut(s) 99, 251
Bme1390I CCNGG 8 cut(s) 18, 83, 256, 298, 552, 582, 857, 877
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 5 cut(s) 79, 116, 117, 258, 867
BmiI GGNNCC 4 cut(s) 118, 295, 355, 715
BmrFI CCNGG 8 cut(s) 18, 83, 256, 298, 552, 582, 857, 877
BmsI GCATC 3 cut(s) 141, 523, 790
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BpmI CTGGAG 2 cut(s) 481, 564
Bpu10I CCTNAGC 1 cut(s) 227
Bpu1102I GCTNAGC 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 407
BpuMI CCSGG 1 cut(s) 857
BsaHI GRCGYC 3 cut(s) 273, 288, 294
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 5 cut(s) 306, 341, 357, 875, 876
Bsc4I CCNNNNNNNGG 5 cut(s) 266, 500, 557, 667, 876
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 464, 613
BseBI CCWGG 7 cut(s) 18, 83, 256, 298, 552, 582, 877
BseDI CCNNGG 5 cut(s) 306, 341, 357, 875, 876
BseGI GGATG 1 cut(s) 849
BseLI CCNNNNNNNGG 5 cut(s) 266, 500, 557, 667, 876
BseMII CTCAG 3 cut(s) 36, 218, 657
BseNI ACTGG 2 cut(s) 464, 613
BsePI GCGCGC 1 cut(s) 235
BseSI GKGCMC 3 cut(s) 120, 469, 476
BsgI GTGCAG 1 cut(s) 564
Bsh1236I CGCG 1 cut(s) 237
BshFI GGCC 3 cut(s) 118, 259, 869
BshNI GGYRCC 3 cut(s) 293, 353, 713
BsiHKAI GWGCWC 2 cut(s) 60, 469
BsiSI CCGG 2 cut(s) 35, 856
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 5 cut(s) 266, 500, 557, 667, 876
BsmAI GTCTC 4 cut(s) 316, 378, 425, 616
BsmBI CGTCTC 1 cut(s) 616
BsmFI GGGAC 1 cut(s) 427
BsnI GGCC 3 cut(s) 118, 259, 869
Bso31I GGTCTC 1 cut(s) 316
Bsp120I GGGCCC 1 cut(s) 116
Bsp1286I GDGCHC 5 cut(s) 60, 120, 349, 469, 476
Bsp143I GATC 4 cut(s) 42, 183, 324, 484
Bsp1720I GCTNAGC 1 cut(s) 22
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 2 cut(s) 98, 250
BspANI GGCC 3 cut(s) 118, 259, 869
BspCNI CTCAG 3 cut(s) 35, 219, 658
BspFNI CGCG 1 cut(s) 237
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 4 cut(s) 118, 295, 355, 715
BspMI ACCTGC 1 cut(s) 97
BspPI GGATC 2 cut(s) 37, 319
BspT107I GGYRCC 3 cut(s) 293, 353, 713
BspTI CTTAAG 1 cut(s) 586
BspTNI GGTCTC 1 cut(s) 316
BsrBI CCGCTC 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 2 cut(s) 464, 613
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 5 cut(s) 306, 341, 357, 875, 876
BssHII GCGCGC 1 cut(s) 235
BssMI GATC 4 cut(s) 42, 183, 324, 484
BssNI GRCGYC 3 cut(s) 273, 288, 294
BssSI CACGAG 1 cut(s) 675
BssT1I CCWWGG 3 cut(s) 306, 341, 357
Bst2BI CACGAG 1 cut(s) 675
Bst2UI CCWGG 7 cut(s) 18, 83, 256, 298, 552, 582, 877
Bst4CI ACNGT 1 cut(s) 471
Bst6I CTCTTC 1 cut(s) 315
BstACI GRCGYC 3 cut(s) 273, 288, 294
BstAFI CTTAAG 1 cut(s) 586
BstAPI GCANNNNNTGC 1 cut(s) 542
BstC8I GCNNGC 5 cut(s) 56, 213, 223, 233, 237
BstDEI CTNAG 3 cut(s) 22, 227, 666
BstDSI CCRYGG 1 cut(s) 306
BstEII GGTNACC 1 cut(s) 452
BstENI CCTNNNNNAGG 1 cut(s) 665
BstF5I GGATG 1 cut(s) 849
BstFNI CGCG 1 cut(s) 237
BstH2I RGCGCY 3 cut(s) 250, 297, 507
BstHHI GCGC 5 cut(s) 237, 239, 249, 296, 506
BstKTI GATC 4 cut(s) 45, 186, 327, 487
BstMAI GTCTC 4 cut(s) 316, 378, 425, 616
BstMBI GATC 4 cut(s) 42, 183, 324, 484
BstMWI GCNNNNNNNGC 4 cut(s) 103, 542, 688, 809
BstNI CCWGG 7 cut(s) 18, 83, 256, 298, 552, 582, 877
BstPI GGTNACC 1 cut(s) 452
BstSCI CCNGG 8 cut(s) 16, 81, 254, 296, 550, 580, 855, 875
BstSLI GKGCMC 3 cut(s) 120, 469, 476
BstUI CGCG 1 cut(s) 237
BstX2I RGATCY 3 cut(s) 42, 324, 484
BstYI RGATCY 3 cut(s) 42, 324, 484
BsuI GTATCC 1 cut(s) 664
BsuRI GGCC 3 cut(s) 118, 259, 869
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 849
BtsIMutI CAGTG 3 cut(s) 315, 457, 476
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 5 cut(s) 56, 213, 223, 233, 237
CaiI CAGNNNCTG 1 cut(s) 551
CciI TCATGA 1 cut(s) 280
CfoI GCGC 5 cut(s) 237, 239, 249, 296, 506
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 5 cut(s) 79, 116, 117, 258, 867
CseI GACGC 1 cut(s) 281
Csp6I GTAC 2 cut(s) 354, 567
CviAII CATG 2 cut(s) 281, 307
CviQI GTAC 2 cut(s) 354, 567
DdeI CTNAG 3 cut(s) 22, 227, 666
DinI GGCGCC 1 cut(s) 295
DpnI GATC 4 cut(s) 44, 185, 326, 486
DpnII GATC 4 cut(s) 42, 183, 324, 484
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 3 cut(s) 306, 341, 357
Eco24I GRGCYC 3 cut(s) 60, 120, 349
Eco31I GGTCTC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 339
Eco91I GGTNACC 1 cut(s) 452
EcoICRI GAGCTC 1 cut(s) 58
EcoNI CCTNNNNNAGG 1 cut(s) 665
EcoO109I RGGNCCY 1 cut(s) 79
EcoO65I GGTNACC 1 cut(s) 452
EcoRI GAATTC 1 cut(s) 640
EcoRII CCWGG 7 cut(s) 16, 81, 254, 296, 550, 580, 875
EcoT14I CCWWGG 3 cut(s) 306, 341, 357
EcoT38I GRGCYC 3 cut(s) 60, 120, 349
EgeI GGCGCC 1 cut(s) 295
EheI GGCGCC 1 cut(s) 295
ErhI CCWWGG 3 cut(s) 306, 341, 357
Esp3I CGTCTC 1 cut(s) 616
FaeI CATG 2 cut(s) 284, 310
FaqI GGGAC 1 cut(s) 427
FatI CATG 2 cut(s) 280, 306
FauNDI CATATG 1 cut(s) 571
Fnu4HI GCNGC 2 cut(s) 98, 250
FokI GGATG 1 cut(s) 836
FriOI GRGCYC 3 cut(s) 60, 120, 349
Fsp4HI GCNGC 2 cut(s) 98, 250
FspBI CTAG 2 cut(s) 342, 417
GlaI GCGC 5 cut(s) 236, 238, 248, 295, 505
GluI GCNGC 2 cut(s) 98, 250
GsuI CTGGAG 2 cut(s) 481, 564
HaeII RGCGCY 3 cut(s) 250, 297, 507
HaeIII GGCC 3 cut(s) 118, 259, 869
HapII CCGG 2 cut(s) 35, 856
HgaI GACGC 1 cut(s) 281
HhaI GCGC 5 cut(s) 237, 239, 249, 296, 506
Hin1I GRCGYC 3 cut(s) 273, 288, 294
Hin1II CATG 2 cut(s) 284, 310
Hin6I GCGC 5 cut(s) 235, 237, 247, 294, 504
HinP1I GCGC 5 cut(s) 235, 237, 247, 294, 504
HincII GTYRAC 1 cut(s) 781
HindII GTYRAC 1 cut(s) 781
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 1 cut(s) 386
HpaI GTTAAC 1 cut(s) 781
HpaII CCGG 2 cut(s) 35, 856
HphI GGTGA 6 cut(s) 121, 154, 178, 295, 464, 646
Hpy166II GTNNAC 3 cut(s) 467, 781, 790
Hpy188I TCNGA 4 cut(s) 47, 532, 667, 704
Hpy188III TCNNGA 4 cut(s) 136, 181, 281, 740
Hpy8I GTNNAC 3 cut(s) 467, 781, 790
Hpy99I CGWCG 7 cut(s) 65, 74, 125, 167, 245, 275, 293
HpyAV CCTTC 3 cut(s) 133, 442, 621
HpyCH4III ACNGT 1 cut(s) 471
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 3 cut(s) 467, 536, 545
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 542, 688, 809
HpyF3I CTNAG 3 cut(s) 22, 227, 666
HpySE526I ACGT 1 cut(s) 288
Hsp92I GRCGYC 3 cut(s) 273, 288, 294
Hsp92II CATG 2 cut(s) 284, 310
HspAI GCGC 5 cut(s) 235, 237, 247, 294, 504
KasI GGCGCC 1 cut(s) 293
KpnI GGTACC 1 cut(s) 357
KspAI GTTAAC 1 cut(s) 781
Kzo9I GATC 4 cut(s) 42, 183, 324, 484
LmnI GCTCC 2 cut(s) 257, 526
LweI GCATC 3 cut(s) 141, 523, 790
MaeI CTAG 2 cut(s) 342, 417
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 452, 652
MalI GATC 4 cut(s) 44, 185, 326, 486
MbiI CCGCTC 1 cut(s) 252
MboI GATC 4 cut(s) 42, 183, 324, 484
MboII GAAGA 5 cut(s) 52, 332, 377, 385, 809
MflI RGATCY 3 cut(s) 42, 324, 484
MhlI GDGCHC 5 cut(s) 60, 120, 349, 469, 476
MluCI AATT 5 cut(s) 155, 263, 640, 821, 883
Mly113I GGCGCC 1 cut(s) 294
MlyI GAGTC 1 cut(s) 380
MseI TTAA 2 cut(s) 587, 780
MslI CAYNNNNRTG 1 cut(s) 462
MspCI CTTAAG 1 cut(s) 586
MspI CCGG 2 cut(s) 35, 856
MspR9I CCNGG 8 cut(s) 18, 83, 256, 298, 552, 582, 857, 877
MvaI CCWGG 7 cut(s) 18, 83, 256, 298, 552, 582, 877
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 4 cut(s) 103, 542, 688, 809
NarI GGCGCC 1 cut(s) 294
NciI CCSGG 1 cut(s) 857
NcoI CCATGG 1 cut(s) 306
NdeI CATATG 1 cut(s) 571
NdeII GATC 4 cut(s) 42, 183, 324, 484
NlaIII CATG 2 cut(s) 284, 310
NlaIV GGNNCC 4 cut(s) 118, 295, 355, 715
NmuCI GTSAC 2 cut(s) 452, 652
OliI CACNNNNGTG 1 cut(s) 462
PagI TCATGA 1 cut(s) 280
PaqCI CACCTGC 1 cut(s) 97
PasI CCCWGGG 1 cut(s) 876
PauI GCGCGC 1 cut(s) 235
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 273
PkrI GCNGC 2 cut(s) 99, 251
PleI GAGTC 1 cut(s) 380
PluTI GGCGCC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 380
PpuMI RGGWCCY 1 cut(s) 79
Psp124BI GAGCTC 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 7 cut(s) 16, 81, 254, 296, 550, 580, 875
PspEI GGTNACC 1 cut(s) 452
PspGI CCWGG 7 cut(s) 16, 81, 254, 296, 550, 580, 875
PspN4I GGNNCC 4 cut(s) 118, 295, 355, 715
PspOMI GGGCCC 1 cut(s) 116
PspPI GGNCC 5 cut(s) 79, 116, 117, 258, 867
PspPPI RGGWCCY 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 3 cut(s) 42, 324, 484
PteI GCGCGC 1 cut(s) 235
RsaI GTAC 2 cut(s) 355, 568
RsaNI GTAC 2 cut(s) 354, 567
RseI CAYNNNNRTG 1 cut(s) 462
SacI GAGCTC 1 cut(s) 60
SaqAI TTAA 2 cut(s) 587, 780
SatI GCNGC 2 cut(s) 98, 250
Sau3AI GATC 4 cut(s) 42, 183, 324, 484
Sau96I GGNCC 5 cut(s) 79, 116, 117, 258, 867
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 8 cut(s) 18, 83, 256, 298, 552, 582, 857, 877
SduI GDGCHC 5 cut(s) 60, 120, 349, 469, 476
SfaNI GCATC 3 cut(s) 141, 523, 790
SfoI GGCGCC 1 cut(s) 295
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 462
SmlI CTYRAG 2 cut(s) 422, 586
SmoI CTYRAG 2 cut(s) 422, 586
SpeI ACTAGT 1 cut(s) 416
Sse9I AATT 5 cut(s) 155, 263, 640, 821, 883
SsiI CCGC 2 cut(s) 98, 250
SspDI GGCGCC 1 cut(s) 293
SspMI CTAG 2 cut(s) 342, 417
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 8 cut(s) 16, 81, 254, 296, 550, 580, 855, 875
StyI CCWWGG 3 cut(s) 306, 341, 357
TaaI ACNGT 1 cut(s) 471
TaiI ACGT 1 cut(s) 291
TaqI TCGA 2 cut(s) 60, 243
TasI AATT 5 cut(s) 155, 263, 640, 821, 883
TatI WGTACW 1 cut(s) 566
TauI GCSGC 2 cut(s) 100, 252
Tru1I TTAA 2 cut(s) 587, 780
Tru9I TTAA 2 cut(s) 587, 780
TscAI CASTG 3 cut(s) 322, 464, 476
TseFI GTSAC 2 cut(s) 452, 652
Tsp45I GTSAC 2 cut(s) 452, 652
TspDTI ATGAA 1 cut(s) 269
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 3 cut(s) 322, 464, 476
Vha464I CTTAAG 1 cut(s) 586
VneI GTGCAC 1 cut(s) 465
VpaK11BI GGWCC 1 cut(s) 79
XagI CCTNNNNNAGG 1 cut(s) 665
XapI RAATTY 3 cut(s) 155, 263, 640
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
XmaJI CCTAGG 1 cut(s) 341
XspI CTAG 2 cut(s) 342, 417
ZraI GACGTC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.