Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004689

Physical Location & Seq

Genomic Coordinates Reverse (-)

72708013 .. 72709400

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG453300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGTGGTTATGAATACAGGAACAGCTCATGAGACCCGACAGGCAAAGGCCCGGTGGGGAGAGCTTGATGAGGACGACGGAGACGACCTGGACTTCCTTTTGCTGCCGCCGAAGGAGGTGATCGGGCCCAACGAGAACGGCGTCAAGAAGGTGATTGAGTACAAGTTCAATGAGGAGGGAAAAAAGGTCAAGATCACTACTACGGTCAGGACTCGGAAAGTCGCCAAAGCTCGGCTCAGTAAGCAGGCCGTGGAGCGCCGCTCGTGGGCCAAATTCGGAGAGGCTGTCAATGAGAACGTCGGCGAAAGCCGGACCTTGGTCTCCACTGAAGAGATCCAACTTGAGCGCCCTAAGGCTCCAGGTAGTAGCAAGGCAGCAAAACCAGAACCTTTGGCCCCCAAAAACAATGCTACTTACATCAAATGCAGGTATTGTAAGGGTGAGCACTGGACTTCAAGTTGCCCGCACAAGGATCTTTTCCAAGATACCGAAGTATCTGAAGTACCTGTCTCAGATAACCAAACTCCAGGAGCCAGCAAGACTACATATGTTCCTCCAGGCTTGAGAGATAGGGCAGACAAAACTGAAGTTAGACCAAGAAGGGATGAGAATTCTGTGCGTGTCACCAACCTTTCAGAGGATACACGGGAGCCCGACTTGCGGGAACTTTTCCTGCCTTTTGGCGAAGTAAGCCGTGTTTATGTTGCTCTTGACAAAGAAACTCAAGTCAGCCGAGGATTTGGTTTTGTTAACTTTTTGAGGAGGGAAGATGCCCAGAAAGCCATCAACAAATTGAATGGATATGGTTACGACAATCTCATTCTTAGTGTTGAATGGGCCGCACCCAGGCCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

RRM_1 eIF3g

Protein Analysis

285

Amino Acids

32.16

Weight (kDa)

8.28

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF3g	PF12353	40 - 159	1.4e-34	Eukaryotic translation initiation factor 3 subunit G
RRM_1	PF00076	206 - 272	9.4e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11400 AT3G11400
fragaria_vesca	FvH4_3g37030 FvH4_3g37070
malus_domestica	MD11G1092800.v1.1
prunus_persica	Prupe.6G068500_v2.0.a1
pyrus_communis	pycom03g06730
rosa_chinensis	RchiOBHm_Chr5g0066421 RchiOBHm_Chr5g0066441
rosa_laevigata	RLG00000035865 RLG00000035866
rosa_multiflora	Rmu_co8442847.1_g000001 Rmu_sc0013821.1_g000010 Rmu_ssc0000249.1_g000027
rosa_roxburghii	Rroxscaffold_1G00014440 Rroxscaffold_1G00014450 Rroxscaffold_1G00014590 Rroxscaffold_1G00014600
rosa_rugosa	Rorug05G0378400 Rorug05G0378500 Rorug05G0378500
rosa_samantha	Rh5AG437100 Rh5AG437200 Rh5BG453200 Rh5BG453300 Rh5CG475600 Rh5CG475700 Rh5DG468400 Rh5DG468500
rosa_wichuraiana	Rw5G040910 Rw5G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	417
AccBSI	CCGCTC	1 cut(s)	261
AciI	CCGC	5 cut(s)	107, 259, 464, 661, 840
AclWI	GGATC	2 cut(s)	328, 480
AcsI	RAATTY	2 cut(s)	272, 610
AcuI	CTGAAG	3 cut(s)	348, 519, 606
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	2 cut(s)	161, 504
AfiI	CCNNNNNNNGG	7 cut(s)	231, 265, 316, 469, 637, 660, 846
AgsI	TTSAA	4 cut(s)	169, 456, 796, 833
AjnI	CCWGG	5 cut(s)	87, 358, 526, 556, 845
AluBI	AGCT	3 cut(s)	26, 64, 230
AluI	AGCT	3 cut(s)	26, 64, 230
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	4 cut(s)	26, 75, 325, 514
AlwI	GGATC	2 cut(s)	328, 480
AoxI	GGCC	7 cut(s)	48, 125, 246, 267, 393, 837, 848
ApaI	GGGCCC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	103, 374
ApoI	RAATTY	2 cut(s)	272, 610
AspLEI	GCGC	2 cut(s)	258, 348
AspS9I	GGNCC	7 cut(s)	49, 125, 126, 267, 312, 394, 837
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	4 cut(s)	130, 163, 452, 616
AvaII	GGWCC	1 cut(s)	312
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	129
BaeI	ACNNNNGTAYC	4 cut(s)	477, 477, 510, 510
BanII	GRGCYC	2 cut(s)	129, 654
BauI	CACGAG	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	90, 386
BccI	CCATC	1 cut(s)	791
BceAI	ACGGC	3 cut(s)	154, 233, 678
BciT130I	CCWGG	5 cut(s)	89, 360, 528, 558, 847
BciVI	GTATCC	1 cut(s)	634
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	4 cut(s)	26, 75, 325, 514
BfoI	RGCGCY	2 cut(s)	259, 349
BfuAI	ACCTGC	1 cut(s)	417
BfuI	GTATCC	1 cut(s)	634
BisI	GCNGC	5 cut(s)	104, 107, 259, 375, 840
BlsI	GCNGC	5 cut(s)	105, 108, 260, 376, 841
Bme1390I	CCNGG	6 cut(s)	52, 89, 360, 528, 558, 847
Bme18I	GGWCC	1 cut(s)	312
BmgT120I	GGNCC	7 cut(s)	49, 125, 126, 267, 312, 394, 837
BmiI	GGNNCC	5 cut(s)	127, 357, 396, 532, 651
BmrFI	CCNGG	6 cut(s)	52, 89, 360, 528, 558, 847
BmsI	GCATC	1 cut(s)	760
BoxI	GACNNNNGTC	1 cut(s)	317
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpmI	CTGGAG	3 cut(s)	342, 510, 540
BpuEI	CTTGAG	3 cut(s)	362, 583, 708
BpuMI	CCSGG	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	141
BsaI	GGTCTC	2 cut(s)	26, 325
BsaJI	CCNNGG	4 cut(s)	249, 315, 733, 845
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	7 cut(s)	231, 265, 316, 469, 637, 660, 846
Bse1I	ACTGG	1 cut(s)	452
Bse21I	CCTNAGG	1 cut(s)	351
BseBI	CCWGG	5 cut(s)	89, 360, 528, 558, 847
BseDI	CCNNGG	4 cut(s)	249, 315, 733, 845
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	7 cut(s)	231, 265, 316, 469, 637, 660, 846
BseMII	CTCAG	2 cut(s)	250, 525
BseNI	ACTGG	1 cut(s)	452
BseRI	GAGGAG	2 cut(s)	188, 775
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	90, 386
BshFI	GGCC	7 cut(s)	50, 127, 248, 269, 395, 839, 850
BsiHKAI	GWGCWC	1 cut(s)	447
BsiSI	CCGG	2 cut(s)	52, 310
BslI	CCNNNNNNNGG	7 cut(s)	231, 265, 316, 469, 637, 660, 846
BsmAI	GTCTC	4 cut(s)	26, 75, 325, 514
BsmBI	CGTCTC	1 cut(s)	75
BsnI	GGCC	7 cut(s)	50, 127, 248, 269, 395, 839, 850
Bso31I	GGTCTC	2 cut(s)	26, 325
Bsp120I	GGGCCC	1 cut(s)	125
Bsp1286I	GDGCHC	3 cut(s)	129, 447, 654
Bsp143I	GATC	4 cut(s)	120, 192, 333, 472
BspACI	CCGC	5 cut(s)	107, 259, 464, 661, 840
BspANI	GGCC	7 cut(s)	50, 127, 248, 269, 395, 839, 850
BspCNI	CTCAG	2 cut(s)	249, 524
BspHI	TCATGA	1 cut(s)	28
BspLI	GGNNCC	5 cut(s)	127, 357, 396, 532, 651
BspMI	ACCTGC	1 cut(s)	417
BspPI	GGATC	2 cut(s)	328, 480
BspTNI	GGTCTC	2 cut(s)	26, 325
BsrBI	CCGCTC	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	452
BssECI	CCNNGG	4 cut(s)	249, 315, 733, 845
BssMI	GATC	4 cut(s)	120, 192, 333, 472
BssNI	GRCGYC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	262
Bst2UI	CCWGG	5 cut(s)	89, 360, 528, 558, 847
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	324
BstACI	GRCGYC	1 cut(s)	141
BstC8I	GCNNGC	3 cut(s)	246, 464, 535
BstDEI	CTNAG	4 cut(s)	236, 351, 511, 824
BstDSI	CCRYGG	1 cut(s)	249
BstENI	CCTNNNNNAGG	1 cut(s)	635
BstF5I	GGATG	1 cut(s)	610
BstH2I	RGCGCY	2 cut(s)	259, 349
BstHHI	GCGC	2 cut(s)	258, 348
BstKTI	GATC	4 cut(s)	123, 195, 336, 475
BstMAI	GTCTC	4 cut(s)	26, 75, 325, 514
BstMBI	GATC	4 cut(s)	120, 192, 333, 472
BstMWI	GCNNNNNNNGC	4 cut(s)	241, 658, 690, 779
BstNI	CCWGG	5 cut(s)	89, 360, 528, 558, 847
BstPAI	GACNNNNGTC	1 cut(s)	317
BstSCI	CCNGG	6 cut(s)	50, 87, 358, 526, 556, 845
BstSLI	GKGCMC	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	90, 386
BstX2I	RGATCY	2 cut(s)	333, 472
BstYI	RGATCY	2 cut(s)	333, 472
Bsu36I	CCTNAGG	1 cut(s)	351
BsuI	GTATCC	1 cut(s)	634
BsuRI	GGCC	7 cut(s)	50, 127, 248, 269, 395, 839, 850
BtgI	CCRYGG	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	610
BtsIMutI	CAGTG	2 cut(s)	324, 445
BveI	ACCTGC	1 cut(s)	417
Cac8I	GCNNGC	3 cut(s)	246, 464, 535
CciI	TCATGA	1 cut(s)	28
CfoI	GCGC	2 cut(s)	258, 348
Cfr13I	GGNCC	7 cut(s)	49, 125, 126, 267, 312, 394, 837
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	160, 503
CviAII	CATG	1 cut(s)	29
CviQI	GTAC	2 cut(s)	160, 503
DdeI	CTNAG	4 cut(s)	236, 351, 511, 824
DpnI	GATC	4 cut(s)	122, 194, 335, 474
DpnII	GATC	4 cut(s)	120, 192, 333, 472
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	315
Eco24I	GRGCYC	2 cut(s)	129, 654
Eco31I	GGTCTC	2 cut(s)	26, 325
Eco47I	GGWCC	1 cut(s)	312
Eco57I	CTGAAG	3 cut(s)	348, 519, 606
Eco81I	CCTNAGG	1 cut(s)	351
EcoNI	CCTNNNNNAGG	1 cut(s)	635
EcoRI	GAATTC	1 cut(s)	610
EcoRII	CCWGG	5 cut(s)	87, 358, 526, 556, 845
EcoT14I	CCWWGG	1 cut(s)	315
EcoT38I	GRGCYC	2 cut(s)	129, 654
ErhI	CCWWGG	1 cut(s)	315
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	1 cut(s)	32
FaiI	YATR	6 cut(s)	11, 30, 547, 549, 702, 804
FatI	CATG	1 cut(s)	28
FauI	CCCGC	2 cut(s)	471, 654
FauNDI	CATATG	1 cut(s)	547
Fnu4HI	GCNGC	5 cut(s)	104, 107, 259, 375, 840
FokI	GGATG	1 cut(s)	617
FriOI	GRGCYC	2 cut(s)	129, 654
Fsp4HI	GCNGC	5 cut(s)	104, 107, 259, 375, 840
GlaI	GCGC	2 cut(s)	257, 347
GluI	GCNGC	5 cut(s)	104, 107, 259, 375, 840
GsuI	CTGGAG	3 cut(s)	342, 510, 540
HaeII	RGCGCY	2 cut(s)	259, 349
HaeIII	GGCC	7 cut(s)	50, 127, 248, 269, 395, 839, 850
HapII	CCGG	2 cut(s)	52, 310
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	2 cut(s)	258, 348
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	32
Hin6I	GCGC	2 cut(s)	256, 346
HinP1I	GCGC	2 cut(s)	256, 346
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HinfI	GANTC	1 cut(s)	211
HpaI	GTTAAC	1 cut(s)	751
HpaII	CCGG	2 cut(s)	52, 310
HphI	GGTGA	4 cut(s)	130, 163, 452, 616
Hpy166II	GTNNAC	1 cut(s)	751
Hpy188I	TCNGA	5 cut(s)	216, 278, 499, 514, 637
Hpy188III	TCNNGA	5 cut(s)	29, 145, 190, 208, 710
Hpy8I	GTNNAC	1 cut(s)	751
Hpy99I	CGWCG	2 cut(s)	80, 302
HpyAV	CCTTC	3 cut(s)	106, 142, 594
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	1 cut(s)	426
HpyF10VI	GCNNNNNNNGC	4 cut(s)	241, 658, 690, 779
HpyF3I	CTNAG	4 cut(s)	236, 351, 511, 824
HpySE526I	ACGT	1 cut(s)	297
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	32
HspAI	GCGC	2 cut(s)	256, 346
KspAI	GTTAAC	1 cut(s)	751
Kzo9I	GATC	4 cut(s)	120, 192, 333, 472
LmnI	GCTCC	4 cut(s)	253, 361, 530, 649
Lsp1109I	GCAGC	2 cut(s)	90, 386
LweI	GCATC	1 cut(s)	760
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	2 cut(s)	622, 806
MalI	GATC	4 cut(s)	122, 194, 335, 474
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	4 cut(s)	120, 192, 333, 472
MboII	GAAGA	2 cut(s)	341, 779
MflI	RGATCY	2 cut(s)	333, 472
MhlI	GDGCHC	3 cut(s)	129, 447, 654
MluCI	AATT	4 cut(s)	272, 610, 791, 853
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	361
MseI	TTAA	1 cut(s)	750
MspI	CCGG	2 cut(s)	52, 310
MspR9I	CCNGG	6 cut(s)	52, 89, 360, 528, 558, 847
MvaI	CCWGG	5 cut(s)	89, 360, 528, 558, 847
MwoI	GCNNNNNNNGC	4 cut(s)	241, 658, 690, 779
NciI	CCSGG	1 cut(s)	52
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	4 cut(s)	120, 192, 333, 472
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	5 cut(s)	127, 357, 396, 532, 651
NmeAIII	GCCGAG	2 cut(s)	211, 758
NmuCI	GTSAC	1 cut(s)	622
PagI	TCATGA	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 129, 138
PfoI	TCCNGGA	1 cut(s)	526
PkrI	GCNGC	5 cut(s)	105, 108, 260, 376, 841
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PshAI	GACNNNNGTC	1 cut(s)	317
Psp6I	CCWGG	5 cut(s)	87, 358, 526, 556, 845
PspGI	CCWGG	5 cut(s)	87, 358, 526, 556, 845
PspN4I	GGNNCC	5 cut(s)	127, 357, 396, 532, 651
PspOMI	GGGCCC	1 cut(s)	125
PspPI	GGNCC	7 cut(s)	49, 125, 126, 267, 312, 394, 837
PsuI	RGATCY	2 cut(s)	333, 472
RsaI	GTAC	2 cut(s)	161, 504
RsaNI	GTAC	2 cut(s)	160, 503
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	5 cut(s)	104, 107, 259, 375, 840
Sau3AI	GATC	4 cut(s)	120, 192, 333, 472
Sau96I	GGNCC	7 cut(s)	49, 125, 126, 267, 312, 394, 837
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	6 cut(s)	52, 89, 360, 528, 558, 847
SduI	GDGCHC	3 cut(s)	129, 447, 654
SfaNI	GCATC	1 cut(s)	760
SinI	GGWCC	1 cut(s)	312
SmlI	CTYRAG	3 cut(s)	341, 562, 723
SmoI	CTYRAG	3 cut(s)	341, 562, 723
Sse9I	AATT	4 cut(s)	272, 610, 791, 853
SsiI	CCGC	5 cut(s)	107, 259, 464, 661, 840
StyD4I	CCNGG	6 cut(s)	50, 87, 358, 526, 556, 845
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	300
TasI	AATT	4 cut(s)	272, 610, 791, 853
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	3 cut(s)	109, 261, 842
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	2 cut(s)	331, 452
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	2 cut(s)	103, 374
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	1 cut(s)	26
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	2 cut(s)	331, 452
VpaK11BI	GGWCC	1 cut(s)	312
XagI	CCTNNNNNAGG	1 cut(s)	635
XapI	RAATTY	2 cut(s)	272, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.