Rroxscaffold_1G00014590

RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
18146179 .. 18148604
2426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014590.1

Sequence Viewer

Length: 987 bp
ATGAAGAGCAAGAAAACCATCTGCTTCTGCATCCCAGCCTGGAAACCCAAAGAAGAGAATGATCAAGAGAAGCCCGACGACGAATCCCATTCCAGCTCTCGTCGGCGGCGGAGCAAGAGAAAAGGAGAGCACGTCGTCTTAACGGCTCATAATAATGATCATGGTGAAGGCAACACAGGAACAACTCATGCTACCCTACAGGCGAAGGCCCGGTGGGGAGAGCTTGATGAGGACGACGGAGACGACCTGGACTTCCTTTTGCTGCCGCCGAAGGAGGTGATCGGGCCCAACGAGAACGGCGTCAAGAAGGTGATTGAGTACAAGTTCAATGAGGATGGCAAAAAGGTCAAGATCACTACTACGGTTAGGATCCGGAAAGTCGCCAAAGCTCGGCTCAGTAAGCAGGCCGTGGAGCGCCGCTCGTGGGCCAAATTCGGAGAGGCTGTCAATGAGAACGTCGGCGAAAGCCGGACCTTGGTCTCCACTGAAGAGATCCAACTTGAGCGCCCTAAGGCTCCTGGTAGTAGCAAGGCAGCAAAACCAGAACCTTTGGCCCCCAAAAACAATGCTACTCACATCAAATGCAGGTATTGTAAGGGTGAGCACTGGACTTCAAGTTGCCCGCACAAGGATCTTTTCCAAGAGACCGAAGTATCTGAAGTACCTGTCTCAGATAACCAGACTCCAGGAGCCAGCAAGACTACATATGTTCCTCCAGGCTTGAGACCTAGGGCAGACAAAACTGAAGTTAGACCAAGAAGGGATGAGAATTCTGTGCGTGTCACCAACCTTTCAGAGGATACACGGGAGCCCGACTTGCGGGAACTTTTCCTGCCTTTTGGCGAAGTAAGCCGTGTTTATGTTGCTCTTGACAAAGAAACTCAAGTCAGCCGAGGATTTGGTTTTGTTAACTTTTTTGAGGAGGGAAGATGCCCAGAAAGCCATCAACAAATTGAATGGATATGGTTACGACAATCTCATTCTTAG

Protein Analysis

328

Amino Acids

37.29

Weight (kDa)

8.41

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF3g PF12353 93 - 212 8.5e-35 Eukaryotic translation initiation factor 3 subunit G
RRM_1 PF00076 259 - 307 2.4e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 576
AccBSI CCGCTC 1 cut(s) 420
AccIII TCCGGA 1 cut(s) 372
AciI CCGC 6 cut(s) 106, 109, 266, 418, 623, 820
AclWI GGATC 4 cut(s) 364, 377, 487, 639
AcsI RAATTY 2 cut(s) 431, 769
AcuI CTGAAG 3 cut(s) 507, 678, 765
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 2 cut(s) 320, 663
AfiI CCNNNNNNNGG 6 cut(s) 390, 424, 475, 628, 796, 819
AgsI TTSAA 3 cut(s) 328, 615, 956
AjiI CACGTC 1 cut(s) 133
AjnI CCWGG 5 cut(s) 38, 246, 517, 685, 715
AluBI AGCT 3 cut(s) 96, 223, 389
AluI AGCT 3 cut(s) 96, 223, 389
Alw21I GWGCWC 2 cut(s) 132, 606
Alw26I GTCTC 5 cut(s) 234, 484, 638, 673, 718
AlwI GGATC 4 cut(s) 364, 377, 487, 639
Aor13HI TCCGGA 1 cut(s) 372
AoxI GGCC 5 cut(s) 207, 284, 405, 426, 552
ApaI GGGCCC 1 cut(s) 288
ApeKI GCWGC 2 cut(s) 262, 533
ApoI RAATTY 2 cut(s) 431, 769
AspA2I CCTAGG 1 cut(s) 728
AspLEI GCGC 2 cut(s) 417, 507
AspS9I GGNCC 6 cut(s) 208, 284, 285, 426, 471, 553
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 5 cut(s) 176, 289, 322, 611, 775
AvaII GGWCC 1 cut(s) 471
AvrII CCTAGG 1 cut(s) 728
AxyI CCTNAGG 1 cut(s) 510
BaeGI GKGCMC 1 cut(s) 288
BaeI ACNNNNGTAYC 2 cut(s) 636, 669
BamHI GGATCC 1 cut(s) 369
BanII GRGCYC 2 cut(s) 288, 813
BauI CACGAG 1 cut(s) 421
Bbv12I GWGCWC 2 cut(s) 132, 606
BbvI GCAGC 2 cut(s) 249, 545
BccI CCATC 3 cut(s) 26, 329, 951
BceAI ACGGC 4 cut(s) 159, 313, 392, 837
BciT130I CCWGG 5 cut(s) 40, 248, 519, 687, 717
BciVI GTATCC 1 cut(s) 793
BclI TGATCA 2 cut(s) 61, 157
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 5 cut(s) 234, 484, 638, 673, 718
BfaI CTAG 1 cut(s) 729
BfmI CTRYAG 1 cut(s) 197
BfoI RGCGCY 2 cut(s) 418, 508
BfuAI ACCTGC 1 cut(s) 576
BfuI GTATCC 1 cut(s) 793
BisI GCNGC 5 cut(s) 107, 263, 266, 418, 534
BlnI CCTAGG 1 cut(s) 728
BlsI GCNGC 5 cut(s) 108, 264, 267, 419, 535
Bme1390I CCNGG 6 cut(s) 40, 211, 248, 519, 687, 717
Bme18I GGWCC 1 cut(s) 471
BmgBI CACGTC 1 cut(s) 133
BmgT120I GGNCC 6 cut(s) 208, 284, 285, 426, 471, 553
BmiI GGNNCC 6 cut(s) 286, 371, 516, 555, 691, 810
BmrFI CCNGG 6 cut(s) 40, 211, 248, 519, 687, 717
BmsI GCATC 2 cut(s) 39, 920
BoxI GACNNNNGTC 1 cut(s) 476
BplI GAGNNNNNCTC 2 cut(s) 404, 436
BpmI CTGGAG 2 cut(s) 669, 699
BpuEI CTTGAG 3 cut(s) 521, 742, 867
BpuMI CCSGG 1 cut(s) 211
BsaHI GRCGYC 1 cut(s) 300
BsaI GGTCTC 3 cut(s) 484, 638, 718
BsaJI CCNNGG 4 cut(s) 408, 474, 728, 892
BsaWI WCCGGW 1 cut(s) 372
BsaXI ACNNNNNCTCC 4 cut(s) 117, 147, 429, 459
Bsc4I CCNNNNNNNGG 6 cut(s) 390, 424, 475, 628, 796, 819
Bse1I ACTGG 1 cut(s) 611
Bse21I CCTNAGG 1 cut(s) 510
BseAI TCCGGA 1 cut(s) 372
BseBI CCWGG 5 cut(s) 40, 248, 519, 687, 717
BseDI CCNNGG 4 cut(s) 408, 474, 728, 892
BseGI GGATG 3 cut(s) 30, 340, 769
BseLI CCNNNNNNNGG 6 cut(s) 390, 424, 475, 628, 796, 819
BseMII CTCAG 2 cut(s) 409, 684
BseNI ACTGG 1 cut(s) 611
BseRI GAGGAG 1 cut(s) 935
BseSI GKGCMC 1 cut(s) 288
BseXI GCAGC 2 cut(s) 249, 545
BseYI CCCAGC 1 cut(s) 34
BshFI GGCC 5 cut(s) 209, 286, 407, 428, 554
BsiHKAI GWGCWC 2 cut(s) 132, 606
BsiSI CCGG 3 cut(s) 211, 373, 469
BslI CCNNNNNNNGG 6 cut(s) 390, 424, 475, 628, 796, 819
BsmAI GTCTC 5 cut(s) 234, 484, 638, 673, 718
BsmBI CGTCTC 1 cut(s) 234
BsnI GGCC 5 cut(s) 209, 286, 407, 428, 554
Bso31I GGTCTC 3 cut(s) 484, 638, 718
Bsp120I GGGCCC 1 cut(s) 284
Bsp1286I GDGCHC 4 cut(s) 132, 288, 606, 813
Bsp13I TCCGGA 1 cut(s) 372
Bsp143I GATC 7 cut(s) 61, 157, 279, 351, 369, 492, 631
BspACI CCGC 6 cut(s) 106, 109, 266, 418, 623, 820
BspANI GGCC 5 cut(s) 209, 286, 407, 428, 554
BspCNI CTCAG 2 cut(s) 408, 683
BspEI TCCGGA 1 cut(s) 372
BspLI GGNNCC 6 cut(s) 286, 371, 516, 555, 691, 810
BspMI ACCTGC 1 cut(s) 576
BspPI GGATC 4 cut(s) 364, 377, 487, 639
BspTNI GGTCTC 3 cut(s) 484, 638, 718
BsrBI CCGCTC 1 cut(s) 420
BsrI ACTGG 1 cut(s) 611
BssECI CCNNGG 4 cut(s) 408, 474, 728, 892
BssMI GATC 7 cut(s) 61, 157, 279, 351, 369, 492, 631
BssNI GRCGYC 1 cut(s) 300
BssSI CACGAG 1 cut(s) 421
BssT1I CCWWGG 2 cut(s) 474, 728
Bst2BI CACGAG 1 cut(s) 421
Bst2UI CCWGG 5 cut(s) 40, 248, 519, 687, 717
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 2 cut(s) 48, 483
BstACI GRCGYC 1 cut(s) 300
BstC8I GCNNGC 3 cut(s) 405, 623, 694
BstDEI CTNAG 4 cut(s) 395, 510, 670, 984
BstDSI CCRYGG 1 cut(s) 408
BstENI CCTNNNNNAGG 1 cut(s) 794
BstF5I GGATG 3 cut(s) 30, 340, 769
BstH2I RGCGCY 2 cut(s) 418, 508
BstHHI GCGC 2 cut(s) 417, 507
BstKTI GATC 7 cut(s) 64, 160, 282, 354, 372, 495, 634
BstMAI GTCTC 5 cut(s) 234, 484, 638, 673, 718
BstMBI GATC 7 cut(s) 61, 157, 279, 351, 369, 492, 631
BstMWI GCNNNNNNNGC 4 cut(s) 400, 817, 849, 939
BstNI CCWGG 5 cut(s) 40, 248, 519, 687, 717
BstPAI GACNNNNGTC 1 cut(s) 476
BstSCI CCNGG 6 cut(s) 38, 209, 246, 517, 685, 715
BstSFI CTRYAG 1 cut(s) 197
BstSLI GKGCMC 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 249, 545
BstX2I RGATCY 3 cut(s) 369, 492, 631
BstYI RGATCY 3 cut(s) 369, 492, 631
Bsu36I CCTNAGG 1 cut(s) 510
BsuI GTATCC 1 cut(s) 793
BsuRI GGCC 5 cut(s) 209, 286, 407, 428, 554
BtgI CCRYGG 1 cut(s) 408
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 3 cut(s) 30, 340, 769
BtsIMutI CAGTG 2 cut(s) 483, 604
BveI ACCTGC 1 cut(s) 576
Cac8I GCNNGC 3 cut(s) 405, 623, 694
CfoI GCGC 2 cut(s) 417, 507
Cfr13I GGNCC 6 cut(s) 208, 284, 285, 426, 471, 553
CseI GACGC 1 cut(s) 289
Csp6I GTAC 2 cut(s) 319, 662
CviAII CATG 2 cut(s) 161, 188
CviQI GTAC 2 cut(s) 319, 662
DdeI CTNAG 4 cut(s) 395, 510, 670, 984
DpnI GATC 7 cut(s) 63, 159, 281, 353, 371, 494, 633
DpnII GATC 7 cut(s) 61, 157, 279, 351, 369, 492, 631
Eam1104I CTCTTC 2 cut(s) 48, 483
EarI CTCTTC 2 cut(s) 48, 483
EciI GGCGGA 1 cut(s) 124
Eco130I CCWWGG 2 cut(s) 474, 728
Eco24I GRGCYC 2 cut(s) 288, 813
Eco31I GGTCTC 3 cut(s) 484, 638, 718
Eco47I GGWCC 1 cut(s) 471
Eco57I CTGAAG 3 cut(s) 507, 678, 765
Eco81I CCTNAGG 1 cut(s) 510
EcoNI CCTNNNNNAGG 1 cut(s) 794
EcoRI GAATTC 1 cut(s) 769
EcoRII CCWGG 5 cut(s) 38, 246, 517, 685, 715
EcoT14I CCWWGG 2 cut(s) 474, 728
EcoT38I GRGCYC 2 cut(s) 288, 813
ErhI CCWWGG 2 cut(s) 474, 728
Esp3I CGTCTC 1 cut(s) 234
FaeI CATG 2 cut(s) 164, 191
FaiI YATR 7 cut(s) 150, 162, 189, 706, 708, 861, 964
FatI CATG 2 cut(s) 160, 187
FauI CCCGC 2 cut(s) 630, 813
FauNDI CATATG 1 cut(s) 706
FbaI TGATCA 2 cut(s) 61, 157
Fnu4HI GCNGC 5 cut(s) 107, 263, 266, 418, 534
FokI GGATG 3 cut(s) 17, 347, 776
FriOI GRGCYC 2 cut(s) 288, 813
Fsp4HI GCNGC 5 cut(s) 107, 263, 266, 418, 534
FspBI CTAG 1 cut(s) 729
GlaI GCGC 2 cut(s) 416, 506
GluI GCNGC 5 cut(s) 107, 263, 266, 418, 534
GsaI CCCAGC 1 cut(s) 38
GsuI CTGGAG 2 cut(s) 669, 699
HaeII RGCGCY 2 cut(s) 418, 508
HaeIII GGCC 5 cut(s) 209, 286, 407, 428, 554
HapII CCGG 3 cut(s) 211, 373, 469
HgaI GACGC 1 cut(s) 289
HhaI GCGC 2 cut(s) 417, 507
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 2 cut(s) 164, 191
Hin6I GCGC 2 cut(s) 415, 505
HinP1I GCGC 2 cut(s) 415, 505
HincII GTYRAC 1 cut(s) 910
HindII GTYRAC 1 cut(s) 910
HinfI GANTC 2 cut(s) 83, 682
HpaI GTTAAC 1 cut(s) 910
HpaII CCGG 3 cut(s) 211, 373, 469
HphI GGTGA 5 cut(s) 176, 289, 322, 611, 775
Hpy166II GTNNAC 1 cut(s) 910
Hpy188I TCNGA 4 cut(s) 437, 658, 673, 796
Hpy188III TCNNGA 5 cut(s) 65, 304, 349, 373, 869
Hpy8I GTNNAC 1 cut(s) 910
Hpy99I CGWCG 6 cut(s) 80, 83, 105, 137, 239, 461
HpyAV CCTTC 5 cut(s) 161, 199, 265, 301, 753
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4IV ACGT 2 cut(s) 132, 456
HpyCH4V TGCA 2 cut(s) 30, 585
HpyF10VI GCNNNNNNNGC 4 cut(s) 400, 817, 849, 939
HpyF3I CTNAG 4 cut(s) 395, 510, 670, 984
HpySE526I ACGT 2 cut(s) 132, 456
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 2 cut(s) 164, 191
HspAI GCGC 2 cut(s) 415, 505
Kpn2I TCCGGA 1 cut(s) 372
Ksp22I TGATCA 2 cut(s) 61, 157
KspAI GTTAAC 1 cut(s) 910
Kzo9I GATC 7 cut(s) 61, 157, 279, 351, 369, 492, 631
LmnI GCTCC 5 cut(s) 111, 412, 520, 689, 808
Lsp1109I GCAGC 2 cut(s) 249, 545
LweI GCATC 2 cut(s) 39, 920
MaeI CTAG 1 cut(s) 729
MaeII ACGT 2 cut(s) 132, 456
MaeIII GTNAC 2 cut(s) 781, 966
MalI GATC 7 cut(s) 63, 159, 281, 353, 371, 494, 633
MbiI CCGCTC 1 cut(s) 420
MboI GATC 7 cut(s) 61, 157, 279, 351, 369, 492, 631
MboII GAAGA 4 cut(s) 16, 65, 500, 939
MflI RGATCY 3 cut(s) 369, 492, 631
MhlI GDGCHC 4 cut(s) 132, 288, 606, 813
MluCI AATT 3 cut(s) 431, 769, 951
MlyI GAGTC 1 cut(s) 676
MmeI TCCRAC 1 cut(s) 520
MnlI CCTC 9 cut(s) 223, 268, 325, 433, 723, 790, 887, 913, 916
MroI TCCGGA 1 cut(s) 372
MseI TTAA 2 cut(s) 140, 909
MslI CAYNNNNRTG 1 cut(s) 153
MspI CCGG 3 cut(s) 211, 373, 469
MspR9I CCNGG 6 cut(s) 40, 211, 248, 519, 687, 717
MvaI CCWGG 5 cut(s) 40, 248, 519, 687, 717
MwoI GCNNNNNNNGC 4 cut(s) 400, 817, 849, 939
NciI CCSGG 1 cut(s) 211
NdeI CATATG 1 cut(s) 706
NdeII GATC 7 cut(s) 61, 157, 279, 351, 369, 492, 631
NlaIII CATG 2 cut(s) 164, 191
NlaIV GGNNCC 6 cut(s) 286, 371, 516, 555, 691, 810
NmeAIII GCCGAG 2 cut(s) 370, 917
NmuCI GTSAC 1 cut(s) 781
PcsI WCGNNNNNNNCGW 3 cut(s) 240, 288, 297
PfeI GAWTC 1 cut(s) 83
PfoI TCCNGGA 1 cut(s) 685
PkrI GCNGC 5 cut(s) 108, 264, 267, 419, 535
PleI GAGTC 1 cut(s) 676
PpsI GAGTC 1 cut(s) 676
PshAI GACNNNNGTC 1 cut(s) 476
Psp6I CCWGG 5 cut(s) 38, 246, 517, 685, 715
PspFI CCCAGC 1 cut(s) 34
PspGI CCWGG 5 cut(s) 38, 246, 517, 685, 715
PspN4I GGNNCC 6 cut(s) 286, 371, 516, 555, 691, 810
PspOMI GGGCCC 1 cut(s) 284
PspPI GGNCC 6 cut(s) 208, 284, 285, 426, 471, 553
PsuI RGATCY 3 cut(s) 369, 492, 631
RsaI GTAC 2 cut(s) 320, 663
RsaNI GTAC 2 cut(s) 319, 662
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 2 cut(s) 140, 909
SatI GCNGC 5 cut(s) 107, 263, 266, 418, 534
Sau3AI GATC 7 cut(s) 61, 157, 279, 351, 369, 492, 631
Sau96I GGNCC 6 cut(s) 208, 284, 285, 426, 471, 553
SchI GAGTC 1 cut(s) 676
ScrFI CCNGG 6 cut(s) 40, 211, 248, 519, 687, 717
SduI GDGCHC 4 cut(s) 132, 288, 606, 813
SfaNI GCATC 2 cut(s) 39, 920
SfcI CTRYAG 1 cut(s) 197
SinI GGWCC 1 cut(s) 471
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 3 cut(s) 500, 721, 882
SmoI CTYRAG 3 cut(s) 500, 721, 882
Sse9I AATT 3 cut(s) 431, 769, 951
SsiI CCGC 6 cut(s) 106, 109, 266, 418, 623, 820
SspMI CTAG 1 cut(s) 729
StyD4I CCNGG 6 cut(s) 38, 209, 246, 517, 685, 715
StyI CCWWGG 2 cut(s) 474, 728
TaaI ACNGT 1 cut(s) 364
TaiI ACGT 2 cut(s) 135, 459
TaqII GACCGA 1 cut(s) 662
TasI AATT 3 cut(s) 431, 769, 951
TatI WGTACW 1 cut(s) 318
TauI GCSGC 3 cut(s) 109, 268, 420
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 2 cut(s) 140, 909
Tru9I TTAA 2 cut(s) 140, 909
TscAI CASTG 2 cut(s) 490, 611
TseFI GTSAC 1 cut(s) 781
TseI GCWGC 2 cut(s) 262, 533
Tsp45I GTSAC 1 cut(s) 781
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 2 cut(s) 490, 611
VpaK11BI GGWCC 1 cut(s) 471
XagI CCTNNNNNAGG 1 cut(s) 794
XapI RAATTY 2 cut(s) 431, 769
XmaJI CCTAGG 1 cut(s) 728
XspI CTAG 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.