Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004689

Physical Location & Seq

Genomic Coordinates Forward (+)

7703970 .. 7705912

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1092800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCTCTAGTGAGACCCGGATCCGGAAACCAACCCCCAAAGCTCCGATGGGGAGAGCTCGAGGAGGACGACGGTGAAGACCTCGACTTTCTCCTGCCGCCGAGGCAAGTGATTGGGCCCGACGAGGACGGGATCAAGAGGGTGATCGAATACAAGTTCAACGAGAATGGAAATAAGGTCAAGATGACGACCATTACCCGGGTTCGGAGACTCGCCCAGGCCCGGCTCAGTAAGCGGGCCGTGGAGCGCCGCTCCTGGCCCAAGTTCGGGGACGCCGTGCACGAGGACGTCGGTGCTAGGCTCACCGTGGTCTCCACCGAAGAGATCTTCCTCGAGCGCCCCAGGGCTCCTGGTAGCAAAGCAGAAGAACCAAAGGCTGGAGGAGACCCTCTGTCTCAACTCACAAAAGGAGGGGCTGCTCTCAAACTATGTAGGACTTGTGGTAAGAAGGGTGATCACTGGACTTCACATTGCCCGTATAAGGATCTCGCCCCACCAAATGAAGGATTTAGTGATAAACCTCCTACATCAGAAGTAGTGCCTGGAACTCCTAGCACAGGTAAGTATGTTCCTCCAGTCCAGAGAGGAGGTGGAGACAGAGTTGGAAGTGATATGAGACGAAGGAATGATGAGAACTCTGTTCGTGTCACCAACCTTTCAGAGGACACTCGTGAGCCTGACTTGCTTGAACTTTTCCGGCCTTTTGGTGCTGTTAGCCGTGTTTACGTTGCTTTGGATAAGAATACTTCCGTTAGCAGAGGATTTGGTTTCGTCAACTTTGTGAACAGGGAAGATGCCCAGAGAGCAATCAACAAACTGAACGGGTACGGTTATGACAATCTCATCCTCAGGGTTGAATGGGCTACACCGAGGACAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

RRM_1 eIF3g

Protein Analysis

294

Amino Acids

32.61

Weight (kDa)

9.05

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF3g	PF12353	36 - 163	1.2e-31	Eukaryotic translation initiation factor 3 subunit G
RRM_1	PF00076	214 - 280	1.4e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11400 AT3G11400
fragaria_vesca	FvH4_3g37030 FvH4_3g37070
malus_domestica	MD11G1092800.v1.1
prunus_persica	Prupe.6G068500_v2.0.a1
pyrus_communis	pycom03g06730
rosa_chinensis	RchiOBHm_Chr5g0066421 RchiOBHm_Chr5g0066441
rosa_laevigata	RLG00000035865 RLG00000035866
rosa_multiflora	Rmu_co8442847.1_g000001 Rmu_sc0013821.1_g000010 Rmu_ssc0000249.1_g000027
rosa_roxburghii	Rroxscaffold_1G00014440 Rroxscaffold_1G00014450 Rroxscaffold_1G00014590 Rroxscaffold_1G00014600
rosa_rugosa	Rorug05G0378400 Rorug05G0378500 Rorug05G0378500
rosa_samantha	Rh5AG437100 Rh5AG437200 Rh5BG453200 Rh5BG453300 Rh5CG475600 Rh5CG475700 Rh5DG468400 Rh5DG468500
rosa_wichuraiana	Rw5G040910 Rw5G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccBSI	CCGCTC	1 cut(s)	252
AccIII	TCCGGA	1 cut(s)	23
AciI	CCGC	3 cut(s)	98, 235, 250
AclWI	GGATC	4 cut(s)	15, 28, 140, 492
AcyI	GRCGYC	2 cut(s)	273, 288
AfaI	GTAC	1 cut(s)	827
AgsI	TTSAA	3 cut(s)	160, 689, 857
AhdI	GACNNNNNGTC	1 cut(s)	391
AjnI	CCWGG	5 cut(s)	216, 254, 341, 349, 541
AluBI	AGCT	2 cut(s)	43, 58
AluI	AGCT	2 cut(s)	43, 58
Alw21I	GWGCWC	2 cut(s)	60, 282
Alw26I	GTCTC	7 cut(s)	7, 202, 316, 378, 399, 588, 610
Alw44I	GTGCAC	1 cut(s)	278
AlwI	GGATC	4 cut(s)	15, 28, 140, 492
Ama87I	CYCGRG	3 cut(s)	59, 198, 332
Aor13HI	TCCGGA	1 cut(s)	23
AoxI	GGCC	5 cut(s)	116, 219, 237, 257, 698
ApaI	GGGCCC	1 cut(s)	120
ApaLI	GTGCAC	1 cut(s)	278
ApeKI	GCWGC	1 cut(s)	416
AspLEI	GCGC	2 cut(s)	249, 339
AspS9I	GGNCC	5 cut(s)	116, 117, 220, 237, 258
AsuC2I	CCSGG	4 cut(s)	18, 199, 200, 223
AsuHPI	GGTGA	5 cut(s)	86, 154, 295, 464, 640
AvaI	CYCGRG	3 cut(s)	59, 198, 332
AxyI	CCTNAGG	1 cut(s)	848
BaeGI	GKGCMC	2 cut(s)	120, 282
BamHI	GGATCC	1 cut(s)	20
BanII	GRGCYC	3 cut(s)	60, 120, 349
BauI	CACGAG	2 cut(s)	281, 669
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	2 cut(s)	60, 282
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	1 cut(s)	42
BceAI	ACGGC	3 cut(s)	224, 260, 702
BciT130I	CCWGG	5 cut(s)	218, 256, 343, 351, 543
BclI	TGATCA	1 cut(s)	454
BcnI	CCSGG	4 cut(s)	18, 199, 200, 223
BcoDI	GTCTC	7 cut(s)	7, 202, 316, 378, 399, 588, 610
BfaI	CTAG	3 cut(s)	8, 297, 552
BfoI	RGCGCY	2 cut(s)	250, 340
BglI	GCCNNNNNGGC	1 cut(s)	103
BglII	AGATCT	1 cut(s)	324
BisI	GCNGC	3 cut(s)	98, 250, 417
BlsI	GCNGC	3 cut(s)	99, 251, 418
Bme1390I	CCNGG	9 cut(s)	18, 199, 200, 218, 223, 256, 343, 351, 543
BmeRI	GACNNNNNGTC	1 cut(s)	391
BmeT110I	CYCGRG	3 cut(s)	59, 198, 332
BmgT120I	GGNCC	5 cut(s)	116, 117, 220, 237, 258
BmiI	GGNNCC	3 cut(s)	22, 118, 348
BmrFI	CCNGG	9 cut(s)	18, 199, 200, 218, 223, 256, 343, 351, 543
BmsI	GCATC	1 cut(s)	784
BpiI	GAAGAC	1 cut(s)	84
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
BpmI	CTGGAG	2 cut(s)	399, 558
BpuMI	CCSGG	4 cut(s)	18, 199, 200, 223
BsaHI	GRCGYC	2 cut(s)	273, 288
BsaI	GGTCTC	3 cut(s)	7, 316, 378
BsaJI	CCNNGG	8 cut(s)	101, 198, 216, 240, 306, 341, 342, 869
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bse1I	ACTGG	2 cut(s)	464, 575
Bse21I	CCTNAGG	1 cut(s)	848
Bse3DI	GCAATG	1 cut(s)	469
BseAI	TCCGGA	1 cut(s)	23
BseBI	CCWGG	5 cut(s)	218, 256, 343, 351, 543
BseDI	CCNNGG	8 cut(s)	101, 198, 216, 240, 306, 341, 342, 869
BseGI	GGATG	1 cut(s)	843
BseMI	GCAATG	1 cut(s)	469
BseMII	CTCAG	2 cut(s)	241, 862
BseNI	ACTGG	2 cut(s)	464, 575
BseRI	GAGGAG	3 cut(s)	77, 396, 600
BseSI	GKGCMC	2 cut(s)	120, 282
BseXI	GCAGC	1 cut(s)	403
BshFI	GGCC	5 cut(s)	118, 221, 239, 259, 700
BsiHKAI	GWGCWC	2 cut(s)	60, 282
BsiHKCI	CYCGRG	3 cut(s)	59, 198, 332
BsiSI	CCGG	5 cut(s)	18, 24, 199, 223, 697
BslFI	GGGAC	1 cut(s)	284
BsmAI	GTCTC	7 cut(s)	7, 202, 316, 378, 399, 588, 610
BsmBI	CGTCTC	1 cut(s)	610
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	5 cut(s)	118, 221, 239, 259, 700
Bso31I	GGTCTC	3 cut(s)	7, 316, 378
BsoBI	CYCGRG	3 cut(s)	59, 198, 332
Bsp120I	GGGCCC	1 cut(s)	116
Bsp1286I	GDGCHC	4 cut(s)	60, 120, 282, 349
Bsp13I	TCCGGA	1 cut(s)	23
Bsp143I	GATC	6 cut(s)	20, 132, 144, 324, 454, 484
BspACI	CCGC	3 cut(s)	98, 235, 250
BspANI	GGCC	5 cut(s)	118, 221, 239, 259, 700
BspCNI	CTCAG	2 cut(s)	240, 861
BspEI	TCCGGA	1 cut(s)	23
BspLI	GGNNCC	3 cut(s)	22, 118, 348
BspPI	GGATC	4 cut(s)	15, 28, 140, 492
BspTNI	GGTCTC	3 cut(s)	7, 316, 378
BsrBI	CCGCTC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	464, 575
BssECI	CCNNGG	8 cut(s)	101, 198, 216, 240, 306, 341, 342, 869
BssMI	GATC	6 cut(s)	20, 132, 144, 324, 454, 484
BssNI	GRCGYC	2 cut(s)	273, 288
BssSI	CACGAG	2 cut(s)	281, 669
Bst2BI	CACGAG	2 cut(s)	281, 669
Bst2UI	CCWGG	5 cut(s)	218, 256, 343, 351, 543
Bst4CI	ACNGT	3 cut(s)	74, 307, 830
Bst6I	CTCTTC	1 cut(s)	315
BstACI	GRCGYC	2 cut(s)	273, 288
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	2 cut(s)	227, 848
BstDSI	CCRYGG	2 cut(s)	240, 306
BstENI	CCTNNNNNAGG	2 cut(s)	555, 659
BstF5I	GGATG	1 cut(s)	843
BstH2I	RGCGCY	2 cut(s)	250, 340
BstHHI	GCGC	2 cut(s)	249, 339
BstKTI	GATC	6 cut(s)	23, 135, 147, 327, 457, 487
BstMAI	GTCTC	7 cut(s)	7, 202, 316, 378, 399, 588, 610
BstMBI	GATC	6 cut(s)	20, 132, 144, 324, 454, 484
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 232, 682, 803
BstNI	CCWGG	5 cut(s)	218, 256, 343, 351, 543
BstSCI	CCNGG	9 cut(s)	16, 197, 198, 216, 221, 254, 341, 349, 541
BstSLI	GKGCMC	2 cut(s)	120, 282
BstV1I	GCAGC	1 cut(s)	403
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	3 cut(s)	20, 324, 484
BstYI	RGATCY	3 cut(s)	20, 324, 484
Bsu36I	CCTNAGG	1 cut(s)	848
BsuRI	GGCC	5 cut(s)	118, 221, 239, 259, 700
BtgI	CCRYGG	2 cut(s)	240, 306
BtsCI	GGATG	1 cut(s)	843
BtsIMutI	CAGTG	1 cut(s)	457
Cac8I	GCNNGC	1 cut(s)	237
CfoI	GCGC	2 cut(s)	249, 339
Cfr13I	GGNCC	5 cut(s)	116, 117, 220, 237, 258
Cfr9I	CCCGGG	1 cut(s)	198
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	826
CviQI	GTAC	1 cut(s)	826
DdeI	CTNAG	2 cut(s)	227, 848
DpnI	GATC	6 cut(s)	22, 134, 146, 326, 456, 486
DpnII	GATC	6 cut(s)	20, 132, 144, 324, 454, 484
DriI	GACNNNNNGTC	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	315
Eam1105I	GACNNNNNGTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	315
Ecl136II	GAGCTC	1 cut(s)	58
Eco24I	GRGCYC	3 cut(s)	60, 120, 349
Eco31I	GGTCTC	3 cut(s)	7, 316, 378
Eco53kI	GAGCTC	1 cut(s)	58
Eco81I	CCTNAGG	1 cut(s)	848
Eco88I	CYCGRG	3 cut(s)	59, 198, 332
EcoICRI	GAGCTC	1 cut(s)	58
EcoNI	CCTNNNNNAGG	2 cut(s)	555, 659
EcoRII	CCWGG	5 cut(s)	216, 254, 341, 349, 541
EcoT38I	GRGCYC	3 cut(s)	60, 120, 349
Esp3I	CGTCTC	1 cut(s)	610
FaiI	YATR	5 cut(s)	430, 480, 567, 614, 834
FaqI	GGGAC	1 cut(s)	284
FauI	CCCGC	1 cut(s)	228
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	3 cut(s)	98, 250, 417
FokI	GGATG	1 cut(s)	830
FriOI	GRGCYC	3 cut(s)	60, 120, 349
Fsp4HI	GCNGC	3 cut(s)	98, 250, 417
FspBI	CTAG	3 cut(s)	8, 297, 552
GlaI	GCGC	2 cut(s)	248, 338
GluI	GCNGC	3 cut(s)	98, 250, 417
GsuI	CTGGAG	2 cut(s)	399, 558
HaeII	RGCGCY	2 cut(s)	250, 340
HaeIII	GGCC	5 cut(s)	118, 221, 239, 259, 700
HapII	CCGG	5 cut(s)	18, 24, 199, 223, 697
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	2 cut(s)	249, 339
Hin1I	GRCGYC	2 cut(s)	273, 288
Hin6I	GCGC	2 cut(s)	247, 337
HinP1I	GCGC	2 cut(s)	247, 337
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HinfI	GANTC	1 cut(s)	210
HpaII	CCGG	5 cut(s)	18, 24, 199, 223, 697
HphI	GGTGA	5 cut(s)	86, 154, 295, 464, 640
Hpy166II	GTNNAC	4 cut(s)	280, 724, 775, 784
Hpy188I	TCNGA	4 cut(s)	47, 207, 532, 661
Hpy188III	TCNNGA	5 cut(s)	24, 136, 181, 580, 671
Hpy8I	GTNNAC	4 cut(s)	280, 724, 775, 784
Hpy99I	CGWCG	3 cut(s)	74, 125, 293
HpyAV	CCTTC	3 cut(s)	442, 497, 615
HpyCH4III	ACNGT	3 cut(s)	74, 307, 830
HpyCH4IV	ACGT	2 cut(s)	288, 726
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 232, 682, 803
HpyF3I	CTNAG	2 cut(s)	227, 848
HpySE526I	ACGT	2 cut(s)	288, 726
Hsp92I	GRCGYC	2 cut(s)	273, 288
HspAI	GCGC	2 cut(s)	247, 337
Kpn2I	TCCGGA	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	6 cut(s)	20, 132, 144, 324, 454, 484
LmnI	GCTCC	4 cut(s)	48, 244, 257, 352
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	1 cut(s)	784
MaeI	CTAG	3 cut(s)	8, 297, 552
MaeII	ACGT	2 cut(s)	288, 726
MaeIII	GTNAC	1 cut(s)	646
MalI	GATC	6 cut(s)	22, 134, 146, 326, 456, 486
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	6 cut(s)	20, 132, 144, 324, 454, 484
MboII	GAAGA	5 cut(s)	89, 319, 332, 377, 803
MflI	RGATCY	3 cut(s)	20, 324, 484
MhlI	GDGCHC	4 cut(s)	60, 120, 282, 349
MluCI	AATT	1 cut(s)	877
MlyI	GAGTC	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	583
MroI	TCCGGA	1 cut(s)	23
MspI	CCGG	5 cut(s)	18, 24, 199, 223, 697
MspR9I	CCNGG	9 cut(s)	18, 199, 200, 218, 223, 256, 343, 351, 543
MvaI	CCWGG	5 cut(s)	218, 256, 343, 351, 543
MwoI	GCNNNNNNNGC	4 cut(s)	103, 232, 682, 803
NciI	CCSGG	4 cut(s)	18, 199, 200, 223
NdeII	GATC	6 cut(s)	20, 132, 144, 324, 454, 484
NlaIV	GGNNCC	3 cut(s)	22, 118, 348
NmeAIII	GCCGAG	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	646
PaeR7I	CTCGAG	2 cut(s)	59, 332
PasI	CCCWGGG	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	3 cut(s)	66, 273, 279
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	3 cut(s)	99, 251, 418
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	60
Psp6I	CCWGG	5 cut(s)	216, 254, 341, 349, 541
PspGI	CCWGG	5 cut(s)	216, 254, 341, 349, 541
PspN4I	GGNNCC	3 cut(s)	22, 118, 348
PspOMI	GGGCCC	1 cut(s)	116
PspPI	GGNCC	5 cut(s)	116, 117, 220, 237, 258
PspXI	VCTCGAGB	2 cut(s)	59, 332
PsuI	RGATCY	3 cut(s)	20, 324, 484
RsaI	GTAC	1 cut(s)	827
RsaNI	GTAC	1 cut(s)	826
SacI	GAGCTC	1 cut(s)	60
SatI	GCNGC	3 cut(s)	98, 250, 417
Sau3AI	GATC	6 cut(s)	20, 132, 144, 324, 454, 484
Sau96I	GGNCC	5 cut(s)	116, 117, 220, 237, 258
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	9 cut(s)	18, 199, 200, 218, 223, 256, 343, 351, 543
SduI	GDGCHC	4 cut(s)	60, 120, 282, 349
SfaNI	GCATC	1 cut(s)	784
Sfr274I	CTCGAG	2 cut(s)	59, 332
SlaI	CTCGAG	2 cut(s)	59, 332
SmaI	CCCGGG	1 cut(s)	200
SmlI	CTYRAG	2 cut(s)	59, 332
SmoI	CTYRAG	2 cut(s)	59, 332
Sse9I	AATT	1 cut(s)	877
SsiI	CCGC	3 cut(s)	98, 235, 250
SspMI	CTAG	3 cut(s)	8, 297, 552
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	9 cut(s)	16, 197, 198, 216, 221, 254, 341, 349, 541
TaaI	ACNGT	3 cut(s)	74, 307, 830
TaiI	ACGT	2 cut(s)	291, 729
TaqI	TCGA	4 cut(s)	60, 84, 147, 333
TasI	AATT	1 cut(s)	877
TauI	GCSGC	2 cut(s)	100, 252
TscAI	CASTG	1 cut(s)	464
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	1 cut(s)	516
TspGWI	ACGGA	1 cut(s)	739
TspMI	CCCGGG	1 cut(s)	198
TspRI	CASTG	1 cut(s)	464
Van91I	CCANNNNNTGG	1 cut(s)	377
VneI	GTGCAC	1 cut(s)	278
XagI	CCTNNNNNAGG	2 cut(s)	555, 659
XcmI	CCANNNNNNNNNTGG	2 cut(s)	45, 587
XhoI	CTCGAG	2 cut(s)	59, 332
XmaI	CCCGGG	1 cut(s)	198
XspI	CTAG	3 cut(s)	8, 297, 552
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.