Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004689

Physical Location & Seq

Genomic Coordinates Forward (+)

4701907 .. 4704347

Gene Structure 2441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G068500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCTCTAGTGAGACCTGGATCAGGGTCAGCCCAGCCGGCGAAGCTTCGATGGGGAGAGCTCGAAGAGGACGACGGCGAGGATCTGGACTTCCTCCTGCCGCCGAAGCAGGTGATTGGGCCCGACGAGAACGGGATCAAGAAGGTGATAGAGTACAAGTTCAATGAGGACGGCAATAAGGTCAAGATCACGACCACGACCCGGACTCGGAAACTCGCCAACGCTCGACTTAGTAAGCGGGCCGTGGAGCGCCGCTCCTGGCCTAAGTTCGGCGACGCCGTGCATGAGGACGTCGGTGCCAGGCTAACCATGATCTCCACTGAAGAGATCCTCCTTGAGCGCCCCAGGGCTCCTGGTAGTAAGGCAGAAGAACCAAAGGCTGGAGGAGACTCTCTGGCTCAACTCGGAAAAGGAGGGGCTGCTCTCAAACTTTGTAGGACTTGTGGTAAGAAGGGTGACCACTGGACTTCACAGTGCCCATATAAGGATCTCGCCCCACAGGCTGAAGCATTTAGCGATAAGCCTCCTACATCAGATGCCGCAACTGGAGCTGCTGGAACTGGCAAGTATGTTCCTCCAAGTGTGAGAGCAGGGGCAGACAGAACTGGATCTGATATGAGACGAAGGAATGATGAGAACTCTGTTCGTGTCACCAACCTTTCAGAGGACACACGGGAGCCTGACTTGCTTGAACTTTTCCGGCCTTTTGGGGCTGTAAGCCGTGTTTACGTTGCTCTTGATAAGAATACGTCCATTAGCAGAGGATTTGGGTTTGTCAACTTTGTGAACAGGGAAGATGCCCAGAGAGCAATCAACAAACTGAATGGGTACGGTTATGACAATCTCATCCTCAGGGTTGAATGGGCCACACCCAGGACAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

RRM_1 eIF3g

Protein Analysis

295

Amino Acids

32.29

Weight (kDa)

9.0

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11400 AT3G11400
fragaria_vesca	FvH4_3g37030 FvH4_3g37070
malus_domestica	MD11G1092800.v1.1
prunus_persica	Prupe.6G068500_v2.0.a1
pyrus_communis	pycom03g06730
rosa_chinensis	RchiOBHm_Chr5g0066421 RchiOBHm_Chr5g0066441
rosa_laevigata	RLG00000035865 RLG00000035866
rosa_multiflora	Rmu_co8442847.1_g000001 Rmu_sc0013821.1_g000010 Rmu_ssc0000249.1_g000027
rosa_roxburghii	Rroxscaffold_1G00014440 Rroxscaffold_1G00014450 Rroxscaffold_1G00014590 Rroxscaffold_1G00014600
rosa_rugosa	Rorug05G0378400 Rorug05G0378500 Rorug05G0378500
rosa_samantha	Rh5AG437100 Rh5AG437200 Rh5BG453200 Rh5BG453300 Rh5CG475600 Rh5CG475700 Rh5DG468400 Rh5DG468500
rosa_wichuraiana	Rw5G040910 Rw5G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	100
AatII	GACGTC	1 cut(s)	294
Acc36I	ACCTGC	1 cut(s)	100
AccB1I	GGYRCC	1 cut(s)	296
AccB7I	CCANNNNNTGG	1 cut(s)	380
AccBSI	CCGCTC	1 cut(s)	255
AciI	CCGC	4 cut(s)	101, 238, 253, 540
AclWI	GGATC	6 cut(s)	28, 90, 143, 322, 495, 616
AcuI	CTGAAG	2 cut(s)	342, 525
AcyI	GRCGYC	2 cut(s)	276, 291
AfaI	GTAC	2 cut(s)	155, 830
AfiI	CCNNNNNNNGG	8 cut(s)	23, 201, 207, 269, 380, 484, 664, 873
AgsI	TTSAA	3 cut(s)	163, 692, 860
AjnI	CCWGG	6 cut(s)	16, 257, 299, 344, 352, 872
AluBI	AGCT	3 cut(s)	46, 61, 551
AluI	AGCT	3 cut(s)	46, 61, 551
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	3 cut(s)	7, 381, 613
AlwI	GGATC	6 cut(s)	28, 90, 143, 322, 495, 616
AoxI	GGCC	5 cut(s)	119, 240, 260, 701, 864
ApaI	GGGCCC	1 cut(s)	123
ApeKI	GCWGC	2 cut(s)	419, 551
AspLEI	GCGC	2 cut(s)	252, 342
AspS9I	GGNCC	4 cut(s)	119, 120, 240, 864
AsuC2I	CCSGG	1 cut(s)	202
AsuHPI	GGTGA	4 cut(s)	124, 157, 467, 643
AxyI	CCTNAGG	1 cut(s)	851
BaeGI	GKGCMC	2 cut(s)	123, 479
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	3 cut(s)	63, 123, 352
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	406, 538
BccI	CCATC	1 cut(s)	45
BceAI	ACGGC	5 cut(s)	91, 187, 227, 263, 705
BciT130I	CCWGG	6 cut(s)	18, 259, 301, 346, 354, 874
BcnI	CCSGG	1 cut(s)	202
BcoDI	GTCTC	3 cut(s)	7, 381, 613
BfaI	CTAG	1 cut(s)	8
BfoI	RGCGCY	2 cut(s)	253, 343
BfuAI	ACCTGC	1 cut(s)	100
BglI	GCCNNNNNGGC	2 cut(s)	38, 500
BisI	GCNGC	5 cut(s)	101, 253, 420, 540, 552
BlsI	GCNGC	5 cut(s)	102, 254, 421, 541, 553
Bme1390I	CCNGG	7 cut(s)	18, 202, 259, 301, 346, 354, 874
BmgT120I	GGNCC	4 cut(s)	119, 120, 240, 864
BmiI	GGNNCC	4 cut(s)	121, 298, 351, 678
BmrFI	CCNGG	7 cut(s)	18, 202, 259, 301, 346, 354, 874
BmsI	GCATC	2 cut(s)	526, 787
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
BpmI	CTGGAG	2 cut(s)	402, 567
BpuEI	CTTGAG	1 cut(s)	356
BpuMI	CCSGG	1 cut(s)	202
BsaHI	GRCGYC	2 cut(s)	276, 291
BsaI	GGTCTC	1 cut(s)	7
BsaJI	CCNNGG	4 cut(s)	243, 344, 345, 872
Bsc4I	CCNNNNNNNGG	8 cut(s)	23, 201, 207, 269, 380, 484, 664, 873
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	4 cut(s)	467, 550, 565, 610
Bse21I	CCTNAGG	1 cut(s)	851
BseBI	CCWGG	6 cut(s)	18, 259, 301, 346, 354, 874
BseDI	CCNNGG	4 cut(s)	243, 344, 345, 872
BseGI	GGATG	1 cut(s)	846
BseLI	CCNNNNNNNGG	8 cut(s)	23, 201, 207, 269, 380, 484, 664, 873
BseMII	CTCAG	1 cut(s)	865
BseNI	ACTGG	4 cut(s)	467, 550, 565, 610
BseRI	GAGGAG	1 cut(s)	399
BseSI	GKGCMC	2 cut(s)	123, 479
BseXI	GCAGC	2 cut(s)	406, 538
BseYI	CCCAGC	1 cut(s)	33
BshFI	GGCC	5 cut(s)	121, 242, 262, 703, 866
BshNI	GGYRCC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	3 cut(s)	38, 202, 700
BslI	CCNNNNNNNGG	8 cut(s)	23, 201, 207, 269, 380, 484, 664, 873
BsmAI	GTCTC	3 cut(s)	7, 381, 613
BsmBI	CGTCTC	1 cut(s)	613
BsnI	GGCC	5 cut(s)	121, 242, 262, 703, 866
Bso31I	GGTCTC	1 cut(s)	7
Bsp120I	GGGCCC	1 cut(s)	119
Bsp1286I	GDGCHC	4 cut(s)	63, 123, 352, 479
Bsp143I	GATC	8 cut(s)	20, 82, 135, 186, 312, 327, 487, 608
BspACI	CCGC	4 cut(s)	101, 238, 253, 540
BspANI	GGCC	5 cut(s)	121, 242, 262, 703, 866
BspCNI	CTCAG	1 cut(s)	864
BspLI	GGNNCC	4 cut(s)	121, 298, 351, 678
BspMI	ACCTGC	1 cut(s)	100
BspPI	GGATC	6 cut(s)	28, 90, 143, 322, 495, 616
BspT107I	GGYRCC	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	7
BsrBI	CCGCTC	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	4 cut(s)	467, 550, 565, 610
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	4 cut(s)	243, 344, 345, 872
BssMI	GATC	8 cut(s)	20, 82, 135, 186, 312, 327, 487, 608
BssNI	GRCGYC	2 cut(s)	276, 291
Bst2UI	CCWGG	6 cut(s)	18, 259, 301, 346, 354, 874
Bst4CI	ACNGT	2 cut(s)	474, 833
Bst6I	CTCTTC	2 cut(s)	60, 318
BstACI	GRCGYC	2 cut(s)	276, 291
BstC8I	GCNNGC	2 cut(s)	39, 240
BstDEI	CTNAG	3 cut(s)	230, 264, 851
BstDSI	CCRYGG	1 cut(s)	243
BstEII	GGTNACC	1 cut(s)	455
BstENI	CCTNNNNNAGG	2 cut(s)	21, 662
BstF5I	GGATG	1 cut(s)	846
BstH2I	RGCGCY	2 cut(s)	253, 343
BstHHI	GCGC	2 cut(s)	252, 342
BstKTI	GATC	8 cut(s)	23, 85, 138, 189, 315, 330, 490, 611
BstMAI	GTCTC	3 cut(s)	7, 381, 613
BstMBI	GATC	8 cut(s)	20, 82, 135, 186, 312, 327, 487, 608
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 43, 106, 500, 548, 685, 806
BstNI	CCWGG	6 cut(s)	18, 259, 301, 346, 354, 874
BstPI	GGTNACC	1 cut(s)	455
BstSCI	CCNGG	7 cut(s)	16, 200, 257, 299, 344, 352, 872
BstSLI	GKGCMC	2 cut(s)	123, 479
BstV1I	GCAGC	2 cut(s)	406, 538
BstX2I	RGATCY	4 cut(s)	82, 327, 487, 608
BstYI	RGATCY	4 cut(s)	82, 327, 487, 608
Bsu36I	CCTNAGG	1 cut(s)	851
BsuRI	GGCC	5 cut(s)	121, 242, 262, 703, 866
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	846
BtsIMutI	CAGTG	3 cut(s)	318, 460, 479
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	2 cut(s)	39, 240
CfoI	GCGC	2 cut(s)	252, 342
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	4 cut(s)	119, 120, 240, 864
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	154, 829
CviAII	CATG	2 cut(s)	284, 310
CviQI	GTAC	2 cut(s)	154, 829
DdeI	CTNAG	3 cut(s)	230, 264, 851
DpnI	GATC	8 cut(s)	22, 84, 137, 188, 314, 329, 489, 610
DpnII	GATC	8 cut(s)	20, 82, 135, 186, 312, 327, 487, 608
Eam1104I	CTCTTC	2 cut(s)	60, 318
EarI	CTCTTC	2 cut(s)	60, 318
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	3 cut(s)	63, 123, 352
Eco31I	GGTCTC	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	2 cut(s)	342, 525
Eco81I	CCTNAGG	1 cut(s)	851
Eco91I	GGTNACC	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	61
EcoNI	CCTNNNNNAGG	2 cut(s)	21, 662
EcoO65I	GGTNACC	1 cut(s)	455
EcoRII	CCWGG	6 cut(s)	16, 257, 299, 344, 352, 872
EcoT38I	GRGCYC	3 cut(s)	63, 123, 352
Esp3I	CGTCTC	1 cut(s)	613
FaeI	CATG	2 cut(s)	287, 313
FaiI	YATR	7 cut(s)	285, 311, 481, 483, 570, 617, 837
FatI	CATG	2 cut(s)	283, 309
FauI	CCCGC	1 cut(s)	231
Fnu4HI	GCNGC	5 cut(s)	101, 253, 420, 540, 552
FokI	GGATG	1 cut(s)	833
FriOI	GRGCYC	3 cut(s)	63, 123, 352
Fsp4HI	GCNGC	5 cut(s)	101, 253, 420, 540, 552
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	2 cut(s)	251, 341
GluI	GCNGC	5 cut(s)	101, 253, 420, 540, 552
GsaI	CCCAGC	1 cut(s)	37
GsuI	CTGGAG	2 cut(s)	402, 567
HaeII	RGCGCY	2 cut(s)	253, 343
HaeIII	GGCC	5 cut(s)	121, 242, 262, 703, 866
HapII	CCGG	3 cut(s)	38, 202, 700
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	2 cut(s)	252, 342
Hin1I	GRCGYC	2 cut(s)	276, 291
Hin1II	CATG	2 cut(s)	287, 313
Hin6I	GCGC	2 cut(s)	250, 340
HinP1I	GCGC	2 cut(s)	250, 340
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	2 cut(s)	205, 389
HpaII	CCGG	3 cut(s)	38, 202, 700
HphI	GGTGA	4 cut(s)	124, 157, 467, 643
Hpy166II	GTNNAC	3 cut(s)	727, 778, 787
Hpy188I	TCNGA	5 cut(s)	210, 407, 535, 613, 664
Hpy188III	TCNNGA	5 cut(s)	86, 139, 184, 190, 737
Hpy8I	GTNNAC	3 cut(s)	727, 778, 787
Hpy99I	CGWCG	4 cut(s)	77, 128, 278, 296
HpyAV	CCTTC	3 cut(s)	136, 445, 618
HpyCH4III	ACNGT	2 cut(s)	474, 833
HpyCH4IV	ACGT	3 cut(s)	291, 729, 749
HpyCH4V	TGCA	1 cut(s)	283
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 43, 106, 500, 548, 685, 806
HpyF3I	CTNAG	3 cut(s)	230, 264, 851
HpySE526I	ACGT	3 cut(s)	291, 729, 749
Hsp92I	GRCGYC	2 cut(s)	276, 291
Hsp92II	CATG	2 cut(s)	287, 313
HspAI	GCGC	2 cut(s)	250, 340
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Kzo9I	GATC	8 cut(s)	20, 82, 135, 186, 312, 327, 487, 608
LmnI	GCTCC	5 cut(s)	247, 260, 355, 548, 676
Lsp1109I	GCAGC	2 cut(s)	406, 538
LweI	GCATC	2 cut(s)	526, 787
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	3 cut(s)	291, 729, 749
MaeIII	GTNAC	2 cut(s)	455, 649
MalI	GATC	8 cut(s)	22, 84, 137, 188, 314, 329, 489, 610
MbiI	CCGCTC	1 cut(s)	255
MboI	GATC	8 cut(s)	20, 82, 135, 186, 312, 327, 487, 608
MboII	GAAGA	4 cut(s)	77, 335, 380, 806
MflI	RGATCY	4 cut(s)	82, 327, 487, 608
MhlI	GDGCHC	4 cut(s)	63, 123, 352, 479
MluCI	AATT	1 cut(s)	880
MlyI	GAGTC	2 cut(s)	199, 383
MroNI	GCCGGC	1 cut(s)	37
MspI	CCGG	3 cut(s)	38, 202, 700
MspR9I	CCNGG	7 cut(s)	18, 202, 259, 301, 346, 354, 874
MvaI	CCWGG	6 cut(s)	18, 259, 301, 346, 354, 874
MwoI	GCNNNNNNNGC	7 cut(s)	38, 43, 106, 500, 548, 685, 806
NaeI	GCCGGC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	202
NdeII	GATC	8 cut(s)	20, 82, 135, 186, 312, 327, 487, 608
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	287, 313
NlaIV	GGNNCC	4 cut(s)	121, 298, 351, 678
NmuCI	GTSAC	2 cut(s)	455, 649
PaqCI	CACCTGC	1 cut(s)	100
PasI	CCCWGGG	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 276
PdiI	GCCGGC	1 cut(s)	39
PflMI	CCANNNNNTGG	1 cut(s)	380
PkrI	GCNGC	5 cut(s)	102, 254, 421, 541, 553
PleI	GAGTC	2 cut(s)	199, 383
PpsI	GAGTC	2 cut(s)	199, 383
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	6 cut(s)	16, 257, 299, 344, 352, 872
PspEI	GGTNACC	1 cut(s)	455
PspFI	CCCAGC	1 cut(s)	33
PspGI	CCWGG	6 cut(s)	16, 257, 299, 344, 352, 872
PspN4I	GGNNCC	4 cut(s)	121, 298, 351, 678
PspOMI	GGGCCC	1 cut(s)	119
PspPI	GGNCC	4 cut(s)	119, 120, 240, 864
PsuI	RGATCY	4 cut(s)	82, 327, 487, 608
RsaI	GTAC	2 cut(s)	155, 830
RsaNI	GTAC	2 cut(s)	154, 829
SacI	GAGCTC	1 cut(s)	63
SatI	GCNGC	5 cut(s)	101, 253, 420, 540, 552
Sau3AI	GATC	8 cut(s)	20, 82, 135, 186, 312, 327, 487, 608
Sau96I	GGNCC	4 cut(s)	119, 120, 240, 864
SchI	GAGTC	2 cut(s)	199, 383
ScrFI	CCNGG	7 cut(s)	18, 202, 259, 301, 346, 354, 874
SduI	GDGCHC	4 cut(s)	63, 123, 352, 479
SfaNI	GCATC	2 cut(s)	526, 787
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	880
SsiI	CCGC	4 cut(s)	101, 238, 253, 540
SspMI	CTAG	1 cut(s)	8
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	7 cut(s)	16, 200, 257, 299, 344, 352, 872
TaaI	ACNGT	2 cut(s)	474, 833
TaiI	ACGT	3 cut(s)	294, 732, 752
TaqI	TCGA	3 cut(s)	49, 63, 226
TasI	AATT	1 cut(s)	880
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	3 cut(s)	103, 255, 542
TscAI	CASTG	3 cut(s)	325, 467, 479
TseFI	GTSAC	2 cut(s)	455, 649
TseI	GCWGC	2 cut(s)	419, 551
Tsp45I	GTSAC	2 cut(s)	455, 649
TspRI	CASTG	3 cut(s)	325, 467, 479
Van91I	CCANNNNNTGG	1 cut(s)	380
XagI	CCTNNNNNAGG	2 cut(s)	21, 662
XspI	CTAG	1 cut(s)	8
ZraI	GACGTC	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.