Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004689

Physical Location & Seq

Genomic Coordinates Reverse (-)

66414844 .. 66417060

Gene Structure 2217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG475700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAAGAGCAAGAAAACCATCTGCTTCTGCATCCCAGCCTGGAAACCCAAAGAAGAGAATGATCAAGAGAAGCCCGATGACGAATCCCATTCCAGCTCTCGTCGGCGGCGGAGCAAGAGAAAAGGAGAGCACGTCGTCTCAACGGCTCATAATAATGATCATGGTGAAGGCAACACAGGAACAGCTCATGAGACCCGACAGGCAAAGGCCCGGTGGGGAGAGCTTGATGAGGACGACGGAGACGACCTGGACTTCCTTTTGCTGCCGCCGAAGGAGGTGATCGGGCCCAACGAGAACGGCGTCAAGAAGGTGATTGAGTACAAGTTCAATGAGGAGGGAAAAAAGGTCAAGATCACTACTACGGTCAGGACTCGGAAAGTCGCCAAAGCTCGGCTCAGTAAGCAGGCCGTGGAGCGCCGCTCGTGGGCCAAATTCGGAGAGGCTGTCAATGAGAACGTCGGCGAAAGCCGGACCTTGGTCTCCACTGAAGAGATCCAACTTGAGCGCCCTAAGGCTCCAGGTAGTAGCAAGGCAGCAAAACCAGAACCTTTGGCCCCCAAAAACAATGCTACTTACATCAAATGCAGGTATTGTAAGGGTGAGCACTGGACTTCAAGTTGCCCGCACAAGGATCTTTTCCAAGATACCGAAGTATCTGAAGTACCTGTCTCAGATAACCAAACTCCAGGAGCCAGCAAGACTACATATGTTCCTCCAGGCTTGAGAGATAGGGCAGACAAAACTGAAGTTAGACCAAGAAGGGATGAGAATTCTGTGCGTGTCACCAACCTTTCAGAGGATACACGGGAGCCCGACTTGCGGGAACTTTTCCTGCCTTTTGGCGAAGTAAGCCGTGTTTATGTTGCTCTTGACAAAGAAACTCAAGTCAGCCGAGGATTTGGTTTTGTTAACTTTTTGAGGAGGGAAGATGCCCAGAAAGCCATCAACAAATTGAATGGATATGGTTACGACAATCTCATTCTTAGTGTTGAATGGGCCGCACCCAGGCCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

RRM_1 eIF3g

Protein Analysis

338

Amino Acids

38.27

Weight (kDa)

8.77

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF3g	PF12353	93 - 212	2e-34	Eukaryotic translation initiation factor 3 subunit G
RRM_1	PF00076	259 - 325	1.3e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11400 AT3G11400
fragaria_vesca	FvH4_3g37030 FvH4_3g37070
malus_domestica	MD11G1092800.v1.1
prunus_persica	Prupe.6G068500_v2.0.a1
pyrus_communis	pycom03g06730
rosa_chinensis	RchiOBHm_Chr5g0066421 RchiOBHm_Chr5g0066441
rosa_laevigata	RLG00000035865 RLG00000035866
rosa_multiflora	Rmu_co8442847.1_g000001 Rmu_sc0013821.1_g000010 Rmu_ssc0000249.1_g000027
rosa_roxburghii	Rroxscaffold_1G00014440 Rroxscaffold_1G00014450 Rroxscaffold_1G00014590 Rroxscaffold_1G00014600
rosa_rugosa	Rorug05G0378400 Rorug05G0378500 Rorug05G0378500
rosa_samantha	Rh5AG437100 Rh5AG437200 Rh5BG453200 Rh5BG453300 Rh5CG475600 Rh5CG475700 Rh5DG468400 Rh5DG468500
rosa_wichuraiana	Rw5G040910 Rw5G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	576
AccBSI	CCGCTC	1 cut(s)	420
AciI	CCGC	7 cut(s)	106, 109, 266, 418, 623, 820, 999
AclWI	GGATC	2 cut(s)	487, 639
AcsI	RAATTY	2 cut(s)	431, 769
AcuI	CTGAAG	3 cut(s)	507, 678, 765
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	2 cut(s)	320, 663
AfiI	CCNNNNNNNGG	7 cut(s)	390, 424, 475, 628, 796, 819, 1005
AgsI	TTSAA	4 cut(s)	328, 615, 955, 992
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	6 cut(s)	38, 246, 517, 685, 715, 1004
AluBI	AGCT	4 cut(s)	96, 185, 223, 389
AluI	AGCT	4 cut(s)	96, 185, 223, 389
Alw21I	GWGCWC	2 cut(s)	132, 606
Alw26I	GTCTC	5 cut(s)	142, 185, 234, 484, 673
AlwI	GGATC	2 cut(s)	487, 639
AoxI	GGCC	7 cut(s)	207, 284, 405, 426, 552, 996, 1007
ApaI	GGGCCC	1 cut(s)	288
ApeKI	GCWGC	2 cut(s)	262, 533
ApoI	RAATTY	2 cut(s)	431, 769
AspLEI	GCGC	2 cut(s)	417, 507
AspS9I	GGNCC	7 cut(s)	208, 284, 285, 426, 471, 553, 996
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	5 cut(s)	176, 289, 322, 611, 775
AvaII	GGWCC	1 cut(s)	471
AxyI	CCTNAGG	1 cut(s)	510
BaeGI	GKGCMC	1 cut(s)	288
BaeI	ACNNNNGTAYC	4 cut(s)	636, 636, 669, 669
BanII	GRGCYC	2 cut(s)	288, 813
BauI	CACGAG	1 cut(s)	421
Bbv12I	GWGCWC	2 cut(s)	132, 606
BbvI	GCAGC	2 cut(s)	249, 545
BccI	CCATC	2 cut(s)	26, 950
BceAI	ACGGC	4 cut(s)	159, 313, 392, 837
BciT130I	CCWGG	6 cut(s)	40, 248, 519, 687, 717, 1006
BciVI	GTATCC	1 cut(s)	793
BclI	TGATCA	2 cut(s)	61, 157
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	5 cut(s)	142, 185, 234, 484, 673
BfoI	RGCGCY	2 cut(s)	418, 508
BfuAI	ACCTGC	1 cut(s)	576
BfuI	GTATCC	1 cut(s)	793
BisI	GCNGC	6 cut(s)	107, 263, 266, 418, 534, 999
BlsI	GCNGC	6 cut(s)	108, 264, 267, 419, 535, 1000
Bme1390I	CCNGG	7 cut(s)	40, 211, 248, 519, 687, 717, 1006
Bme18I	GGWCC	1 cut(s)	471
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	7 cut(s)	208, 284, 285, 426, 471, 553, 996
BmiI	GGNNCC	5 cut(s)	286, 516, 555, 691, 810
BmrFI	CCNGG	7 cut(s)	40, 211, 248, 519, 687, 717, 1006
BmsI	GCATC	2 cut(s)	39, 919
BoxI	GACNNNNGTC	1 cut(s)	476
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
BpmI	CTGGAG	3 cut(s)	501, 669, 699
BpuEI	CTTGAG	3 cut(s)	521, 742, 867
BpuMI	CCSGG	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	300
BsaI	GGTCTC	2 cut(s)	185, 484
BsaJI	CCNNGG	4 cut(s)	408, 474, 892, 1004
BsaXI	ACNNNNNCTCC	4 cut(s)	117, 147, 429, 459
Bsc4I	CCNNNNNNNGG	7 cut(s)	390, 424, 475, 628, 796, 819, 1005
Bse1I	ACTGG	1 cut(s)	611
Bse21I	CCTNAGG	1 cut(s)	510
BseBI	CCWGG	6 cut(s)	40, 248, 519, 687, 717, 1006
BseDI	CCNNGG	4 cut(s)	408, 474, 892, 1004
BseGI	GGATG	2 cut(s)	30, 769
BseLI	CCNNNNNNNGG	7 cut(s)	390, 424, 475, 628, 796, 819, 1005
BseMII	CTCAG	2 cut(s)	409, 684
BseNI	ACTGG	1 cut(s)	611
BseRI	GAGGAG	2 cut(s)	347, 934
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	249, 545
BseYI	CCCAGC	1 cut(s)	34
BshFI	GGCC	7 cut(s)	209, 286, 407, 428, 554, 998, 1009
BsiHKAI	GWGCWC	2 cut(s)	132, 606
BsiSI	CCGG	2 cut(s)	211, 469
BslI	CCNNNNNNNGG	7 cut(s)	390, 424, 475, 628, 796, 819, 1005
BsmAI	GTCTC	5 cut(s)	142, 185, 234, 484, 673
BsmBI	CGTCTC	2 cut(s)	142, 234
BsnI	GGCC	7 cut(s)	209, 286, 407, 428, 554, 998, 1009
Bso31I	GGTCTC	2 cut(s)	185, 484
Bsp120I	GGGCCC	1 cut(s)	284
Bsp1286I	GDGCHC	4 cut(s)	132, 288, 606, 813
Bsp143I	GATC	6 cut(s)	61, 157, 279, 351, 492, 631
BspACI	CCGC	7 cut(s)	106, 109, 266, 418, 623, 820, 999
BspANI	GGCC	7 cut(s)	209, 286, 407, 428, 554, 998, 1009
BspCNI	CTCAG	2 cut(s)	408, 683
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	5 cut(s)	286, 516, 555, 691, 810
BspMI	ACCTGC	1 cut(s)	576
BspPI	GGATC	2 cut(s)	487, 639
BspTNI	GGTCTC	2 cut(s)	185, 484
BsrBI	CCGCTC	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	611
BssECI	CCNNGG	4 cut(s)	408, 474, 892, 1004
BssMI	GATC	6 cut(s)	61, 157, 279, 351, 492, 631
BssNI	GRCGYC	1 cut(s)	300
BssSI	CACGAG	1 cut(s)	421
BssT1I	CCWWGG	1 cut(s)	474
Bst2BI	CACGAG	1 cut(s)	421
Bst2UI	CCWGG	6 cut(s)	40, 248, 519, 687, 717, 1006
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	2 cut(s)	48, 483
BstACI	GRCGYC	1 cut(s)	300
BstC8I	GCNNGC	3 cut(s)	405, 623, 694
BstDEI	CTNAG	4 cut(s)	395, 510, 670, 983
BstDSI	CCRYGG	1 cut(s)	408
BstENI	CCTNNNNNAGG	1 cut(s)	794
BstF5I	GGATG	2 cut(s)	30, 769
BstH2I	RGCGCY	2 cut(s)	418, 508
BstHHI	GCGC	2 cut(s)	417, 507
BstKTI	GATC	6 cut(s)	64, 160, 282, 354, 495, 634
BstMAI	GTCTC	5 cut(s)	142, 185, 234, 484, 673
BstMBI	GATC	6 cut(s)	61, 157, 279, 351, 492, 631
BstMWI	GCNNNNNNNGC	4 cut(s)	400, 817, 849, 938
BstNI	CCWGG	6 cut(s)	40, 248, 519, 687, 717, 1006
BstPAI	GACNNNNGTC	1 cut(s)	476
BstSCI	CCNGG	7 cut(s)	38, 209, 246, 517, 685, 715, 1004
BstSLI	GKGCMC	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	249, 545
BstX2I	RGATCY	2 cut(s)	492, 631
BstYI	RGATCY	2 cut(s)	492, 631
Bsu36I	CCTNAGG	1 cut(s)	510
BsuI	GTATCC	1 cut(s)	793
BsuRI	GGCC	7 cut(s)	209, 286, 407, 428, 554, 998, 1009
BtgI	CCRYGG	1 cut(s)	408
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	30, 769
BtsIMutI	CAGTG	2 cut(s)	483, 604
BveI	ACCTGC	1 cut(s)	576
Cac8I	GCNNGC	3 cut(s)	405, 623, 694
CciI	TCATGA	1 cut(s)	187
CfoI	GCGC	2 cut(s)	417, 507
Cfr13I	GGNCC	7 cut(s)	208, 284, 285, 426, 471, 553, 996
CseI	GACGC	1 cut(s)	289
Csp6I	GTAC	2 cut(s)	319, 662
CviAII	CATG	2 cut(s)	161, 188
CviQI	GTAC	2 cut(s)	319, 662
DdeI	CTNAG	4 cut(s)	395, 510, 670, 983
DpnI	GATC	6 cut(s)	63, 159, 281, 353, 494, 633
DpnII	GATC	6 cut(s)	61, 157, 279, 351, 492, 631
Eam1104I	CTCTTC	2 cut(s)	48, 483
EarI	CTCTTC	2 cut(s)	48, 483
EciI	GGCGGA	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	474
Eco24I	GRGCYC	2 cut(s)	288, 813
Eco31I	GGTCTC	2 cut(s)	185, 484
Eco47I	GGWCC	1 cut(s)	471
Eco57I	CTGAAG	3 cut(s)	507, 678, 765
Eco81I	CCTNAGG	1 cut(s)	510
EcoNI	CCTNNNNNAGG	1 cut(s)	794
EcoRI	GAATTC	1 cut(s)	769
EcoRII	CCWGG	6 cut(s)	38, 246, 517, 685, 715, 1004
EcoT14I	CCWWGG	1 cut(s)	474
EcoT38I	GRGCYC	2 cut(s)	288, 813
ErhI	CCWWGG	1 cut(s)	474
Esp3I	CGTCTC	2 cut(s)	142, 234
FaeI	CATG	2 cut(s)	164, 191
FaiI	YATR	7 cut(s)	150, 162, 189, 706, 708, 861, 963
FatI	CATG	2 cut(s)	160, 187
FauI	CCCGC	2 cut(s)	630, 813
FauNDI	CATATG	1 cut(s)	706
FbaI	TGATCA	2 cut(s)	61, 157
Fnu4HI	GCNGC	6 cut(s)	107, 263, 266, 418, 534, 999
FokI	GGATG	2 cut(s)	17, 776
FriOI	GRGCYC	2 cut(s)	288, 813
Fsp4HI	GCNGC	6 cut(s)	107, 263, 266, 418, 534, 999
GlaI	GCGC	2 cut(s)	416, 506
GluI	GCNGC	6 cut(s)	107, 263, 266, 418, 534, 999
GsaI	CCCAGC	1 cut(s)	38
GsuI	CTGGAG	3 cut(s)	501, 669, 699
HaeII	RGCGCY	2 cut(s)	418, 508
HaeIII	GGCC	7 cut(s)	209, 286, 407, 428, 554, 998, 1009
HapII	CCGG	2 cut(s)	211, 469
HgaI	GACGC	1 cut(s)	289
HhaI	GCGC	2 cut(s)	417, 507
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	164, 191
Hin6I	GCGC	2 cut(s)	415, 505
HinP1I	GCGC	2 cut(s)	415, 505
HincII	GTYRAC	1 cut(s)	910
HindII	GTYRAC	1 cut(s)	910
HinfI	GANTC	2 cut(s)	83, 370
HpaI	GTTAAC	1 cut(s)	910
HpaII	CCGG	2 cut(s)	211, 469
HphI	GGTGA	5 cut(s)	176, 289, 322, 611, 775
Hpy166II	GTNNAC	1 cut(s)	910
Hpy188I	TCNGA	5 cut(s)	375, 437, 658, 673, 796
Hpy188III	TCNNGA	6 cut(s)	65, 188, 304, 349, 367, 869
Hpy8I	GTNNAC	1 cut(s)	910
Hpy99I	CGWCG	4 cut(s)	105, 137, 239, 461
HpyAV	CCTTC	4 cut(s)	161, 265, 301, 753
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	2 cut(s)	132, 456
HpyCH4V	TGCA	2 cut(s)	30, 585
HpyF10VI	GCNNNNNNNGC	4 cut(s)	400, 817, 849, 938
HpyF3I	CTNAG	4 cut(s)	395, 510, 670, 983
HpySE526I	ACGT	2 cut(s)	132, 456
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	2 cut(s)	164, 191
HspAI	GCGC	2 cut(s)	415, 505
Ksp22I	TGATCA	2 cut(s)	61, 157
KspAI	GTTAAC	1 cut(s)	910
Kzo9I	GATC	6 cut(s)	61, 157, 279, 351, 492, 631
LmnI	GCTCC	5 cut(s)	111, 412, 520, 689, 808
Lsp1109I	GCAGC	2 cut(s)	249, 545
LweI	GCATC	2 cut(s)	39, 919
MaeII	ACGT	2 cut(s)	132, 456
MaeIII	GTNAC	2 cut(s)	781, 965
MalI	GATC	6 cut(s)	63, 159, 281, 353, 494, 633
MbiI	CCGCTC	1 cut(s)	420
MboI	GATC	6 cut(s)	61, 157, 279, 351, 492, 631
MboII	GAAGA	4 cut(s)	16, 65, 500, 938
MflI	RGATCY	2 cut(s)	492, 631
MhlI	GDGCHC	4 cut(s)	132, 288, 606, 813
MluCI	AATT	4 cut(s)	431, 769, 950, 1012
MlyI	GAGTC	1 cut(s)	364
MmeI	TCCRAC	1 cut(s)	520
MseI	TTAA	1 cut(s)	909
MslI	CAYNNNNRTG	1 cut(s)	153
MspI	CCGG	2 cut(s)	211, 469
MspR9I	CCNGG	7 cut(s)	40, 211, 248, 519, 687, 717, 1006
MvaI	CCWGG	6 cut(s)	40, 248, 519, 687, 717, 1006
MwoI	GCNNNNNNNGC	4 cut(s)	400, 817, 849, 938
NciI	CCSGG	1 cut(s)	211
NdeI	CATATG	1 cut(s)	706
NdeII	GATC	6 cut(s)	61, 157, 279, 351, 492, 631
NlaIII	CATG	2 cut(s)	164, 191
NlaIV	GGNNCC	5 cut(s)	286, 516, 555, 691, 810
NmeAIII	GCCGAG	2 cut(s)	370, 917
NmuCI	GTSAC	1 cut(s)	781
PagI	TCATGA	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	3 cut(s)	240, 288, 297
PfeI	GAWTC	1 cut(s)	83
PfoI	TCCNGGA	1 cut(s)	685
PkrI	GCNGC	6 cut(s)	108, 264, 267, 419, 535, 1000
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PshAI	GACNNNNGTC	1 cut(s)	476
Psp6I	CCWGG	6 cut(s)	38, 246, 517, 685, 715, 1004
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	6 cut(s)	38, 246, 517, 685, 715, 1004
PspN4I	GGNNCC	5 cut(s)	286, 516, 555, 691, 810
PspOMI	GGGCCC	1 cut(s)	284
PspPI	GGNCC	7 cut(s)	208, 284, 285, 426, 471, 553, 996
PsuI	RGATCY	2 cut(s)	492, 631
RsaI	GTAC	2 cut(s)	320, 663
RsaNI	GTAC	2 cut(s)	319, 662
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	909
SatI	GCNGC	6 cut(s)	107, 263, 266, 418, 534, 999
Sau3AI	GATC	6 cut(s)	61, 157, 279, 351, 492, 631
Sau96I	GGNCC	7 cut(s)	208, 284, 285, 426, 471, 553, 996
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	7 cut(s)	40, 211, 248, 519, 687, 717, 1006
SduI	GDGCHC	4 cut(s)	132, 288, 606, 813
SfaNI	GCATC	2 cut(s)	39, 919
SinI	GGWCC	1 cut(s)	471
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	3 cut(s)	500, 721, 882
SmoI	CTYRAG	3 cut(s)	500, 721, 882
Sse9I	AATT	4 cut(s)	431, 769, 950, 1012
SsiI	CCGC	7 cut(s)	106, 109, 266, 418, 623, 820, 999
StyD4I	CCNGG	7 cut(s)	38, 209, 246, 517, 685, 715, 1004
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	2 cut(s)	135, 459
TasI	AATT	4 cut(s)	431, 769, 950, 1012
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	4 cut(s)	109, 268, 420, 1001
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	909
Tru9I	TTAA	1 cut(s)	909
TscAI	CASTG	2 cut(s)	490, 611
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	2 cut(s)	262, 533
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	2 cut(s)	490, 611
VpaK11BI	GGWCC	1 cut(s)	471
XagI	CCTNNNNNAGG	1 cut(s)	794
XapI	RAATTY	2 cut(s)	431, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.