FvH4_3g37070

RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
31782144 .. 31786120
3977 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37070.t1

Sequence Viewer

Length: 1047 bp
ATGAGAACAGGAACAGTTGATGAGGCCCGACCGGCAAAGCCACGGTGGGGAGAGCTAGATGAGGAGGACGGAGATCTGGACTTTCTTCTGCCGCCGAAGGAGGTGATCGGACCCGACGAGAACGGCATCAAGAAGGTGATTGAGTACAAATTCAATGATGAAGGCAGAAAGGTGAAGATCACTACTACCGTTCAGACTCGGAAGCTCGCTAGAGCTAGGCTCAGTAAGCAGGCCGTCGAGCGCCGCTCGTGGGTCAAATTCGGCGACGCTGTAAAGGAGAACGCCGGCGAAAGCCGAACCTTGGTCTCCACTGAAGAGATCCATCTTGAGCGCCCTAAGGCTCTTGGTAGTAGCAAGGCGGCAGAACCAGAACCTTTGGCCCCCAAAAATAACGCTACTTACATCAAATGCAGGAACTGTATGGGTGAGCACTGGACTTCGAGTTGTCCGCACAAGCATCTTTTCCAAGATACAGAAGCATCTGAAGTCCCTGTAGCAGATACCAAAGCTCCTGAACCCGGCAAGACTGCATATGTTCCTCCACGCTTGAGACCTGGGGCAGACAGATCCGAAGTAAAACCACGAAGGAATGATGAGAATTCTGTTCGTGTCACCAACCTTTCGGAGGATACAAGGGAGGCCGACTTGCGGAAACTTTTCGAGCCTTTCGGCGAGGTTACCCGTGTTTACGTCGCTCTTGACAAAGAAACTCAAGTCAGCAGAGGATTTGGTTTTGTTAACTTTAGCAGGAAAACCATCTGCTTCTGCATCCCTGCCTGGAAACCCAAAGAAGGGAATGATCAAGAGAAGCACGAAGACGAATCCCATTCCAGCTCTCGTCGCCGGTGCGGCAAGAGAAGAGGAGGGCACGTCGTGTCAACGGCTCATAATGATGATCATGGTGAAGGCAACACCGATGCAGCTGGTACTACTGCTGCCTCAAGCACTGGTGTCGGCGATGCCGCTGCTGTTATGGTGAGTACTGCCAACATTTCTTCCATGGACGGCGGTGATGGTGGCAGCGCACATGGCGGTGGTGAAGGCTAA

Protein Analysis

349

Amino Acids

38.06

Weight (kDa)

6.58

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF3g PF12353 35 - 154 1.7e-31 Eukaryotic translation initiation factor 3 subunit G
RRM_1 PF00076 202 - 251 4.6e-13 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 246
AciI CCGC 9 cut(s) 92, 244, 359, 449, 649, 849, 963, 1008, 1032
AclWI GGATC 2 cut(s) 313, 561
AcsI RAATTY 3 cut(s) 149, 257, 598
AcuI CTGAAG 2 cut(s) 333, 504
AdeI CACNNNGTG 1 cut(s) 874
AfaI GTAC 3 cut(s) 146, 928, 982
AfiI CCNNNNNNNGG 8 cut(s) 47, 250, 301, 518, 625, 648, 791, 792
AgsI TTSAA 1 cut(s) 154
AjiI CACGTC 1 cut(s) 871
AjnI CCWGG 2 cut(s) 553, 776
AluBI AGCT 6 cut(s) 55, 205, 215, 509, 834, 923
AluI AGCT 6 cut(s) 55, 205, 215, 509, 834, 923
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 2 cut(s) 310, 544
AlwI GGATC 2 cut(s) 313, 561
AlwNI CAGNNNCTG 1 cut(s) 417
AoxI GGCC 4 cut(s) 24, 231, 378, 639
ApeKI GCWGC 4 cut(s) 920, 935, 965, 1020
ApoI RAATTY 3 cut(s) 149, 257, 598
Asp700I GAANNNNTTC 1 cut(s) 656
AspLEI GCGC 3 cut(s) 243, 333, 1025
AspS9I GGNCC 3 cut(s) 25, 110, 379
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 8 cut(s) 115, 148, 184, 437, 604, 914, 988, 1022
AvaII GGWCC 1 cut(s) 110
AxyI CCTNAGG 1 cut(s) 336
BaeGI GKGCMC 1 cut(s) 870
BauI CACGAG 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 822
Bbv12I GWGCWC 1 cut(s) 432
BbvI GCAGC 4 cut(s) 922, 932, 952, 1032
BccI CCATC 3 cut(s) 330, 764, 1007
BceAI ACGGC 4 cut(s) 139, 218, 897, 1021
BcgI CGANNNNNNTGC 4 cut(s) 934, 947, 968, 981
BciT130I CCWGG 2 cut(s) 555, 778
BciVI GTATCC 1 cut(s) 622
BclI TGATCA 2 cut(s) 799, 895
BcnI CCSGG 1 cut(s) 519
BcoDI GTCTC 2 cut(s) 310, 544
BfaI CTAG 3 cut(s) 56, 210, 216
BfmI CTRYAG 1 cut(s) 492
BfoI RGCGCY 2 cut(s) 244, 334
BfuI GTATCC 1 cut(s) 622
BglI GCCNNNNNGGC 2 cut(s) 32, 849
BglII AGATCT 1 cut(s) 73
BisI GCNGC 9 cut(s) 92, 244, 360, 850, 921, 936, 963, 966, 1021
BlsI GCNGC 9 cut(s) 93, 245, 361, 851, 922, 937, 964, 967, 1022
BmcAI AGTACT 1 cut(s) 982
Bme1390I CCNGG 3 cut(s) 519, 555, 778
Bme18I GGWCC 1 cut(s) 110
BmgBI CACGTC 1 cut(s) 871
BmgT120I GGNCC 3 cut(s) 25, 110, 379
BmiI GGNNCC 2 cut(s) 112, 381
BmrFI CCNGG 3 cut(s) 519, 555, 778
BmsI GCATC 6 cut(s) 135, 466, 488, 777, 907, 949
BpiI GAAGAC 1 cut(s) 822
BplI GAGNNNNNCTC 4 cut(s) 204, 236, 230, 262
BpuEI CTTGAG 4 cut(s) 347, 568, 696, 925
BpuMI CCSGG 1 cut(s) 519
BsaI GGTCTC 2 cut(s) 310, 544
BsaJI CCNNGG 4 cut(s) 41, 300, 554, 999
BsaXI ACNNNNNCTCC 4 cut(s) 493, 523, 855, 885
Bsc4I CCNNNNNNNGG 8 cut(s) 47, 250, 301, 518, 625, 648, 791, 792
Bse118I RCCGGY 3 cut(s) 31, 284, 843
Bse1I ACTGG 2 cut(s) 437, 952
Bse21I CCTNAGG 1 cut(s) 336
BseBI CCWGG 2 cut(s) 555, 778
BseDI CCNNGG 4 cut(s) 41, 300, 554, 999
BseGI GGATG 1 cut(s) 768
BseLI CCNNNNNNNGG 8 cut(s) 47, 250, 301, 518, 625, 648, 791, 792
BseMII CTCAG 1 cut(s) 235
BseNI ACTGG 2 cut(s) 437, 952
BseRI GAGGAG 2 cut(s) 77, 876
BseSI GKGCMC 1 cut(s) 870
BseXI GCAGC 4 cut(s) 922, 932, 952, 1032
Bsh1285I CGRYCG 1 cut(s) 32
BshFI GGCC 4 cut(s) 26, 233, 380, 641
BsiEI CGRYCG 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 432
BsiSI CCGG 4 cut(s) 32, 285, 519, 844
BslFI GGGAC 1 cut(s) 473
BslI CCNNNNNNNGG 8 cut(s) 47, 250, 301, 518, 625, 648, 791, 792
BsmAI GTCTC 2 cut(s) 310, 544
BsmFI GGGAC 1 cut(s) 473
BsnI GGCC 4 cut(s) 26, 233, 380, 641
Bso31I GGTCTC 2 cut(s) 310, 544
Bsp1286I GDGCHC 2 cut(s) 432, 870
Bsp143I GATC 7 cut(s) 73, 105, 177, 318, 566, 799, 895
Bsp19I CCATGG 1 cut(s) 999
BspACI CCGC 9 cut(s) 92, 244, 359, 449, 649, 849, 963, 1008, 1032
BspANI GGCC 4 cut(s) 26, 233, 380, 641
BspCNI CTCAG 1 cut(s) 234
BspLI GGNNCC 2 cut(s) 112, 381
BspPI GGATC 2 cut(s) 313, 561
BspTNI GGTCTC 2 cut(s) 310, 544
BsrBI CCGCTC 1 cut(s) 246
BsrFI RCCGGY 3 cut(s) 31, 284, 843
BsrI ACTGG 2 cut(s) 437, 952
BssAI RCCGGY 3 cut(s) 31, 284, 843
BssECI CCNNGG 4 cut(s) 41, 300, 554, 999
BssMI GATC 7 cut(s) 73, 105, 177, 318, 566, 799, 895
BssSI CACGAG 1 cut(s) 247
BssT1I CCWWGG 2 cut(s) 300, 999
Bst2BI CACGAG 1 cut(s) 247
Bst2UI CCWGG 2 cut(s) 555, 778
Bst4CI ACNGT 4 cut(s) 16, 45, 190, 419
Bst6I CTCTTC 2 cut(s) 309, 853
BstC8I GCNNGC 3 cut(s) 207, 231, 286
BstDEI CTNAG 2 cut(s) 221, 336
BstDSI CCRYGG 2 cut(s) 41, 999
BstEII GGTNACC 1 cut(s) 676
BstENI CCTNNNNNAGG 1 cut(s) 623
BstF5I GGATG 1 cut(s) 768
BstH2I RGCGCY 2 cut(s) 244, 334
BstHHI GCGC 3 cut(s) 243, 333, 1025
BstKTI GATC 7 cut(s) 76, 108, 180, 321, 569, 802, 898
BstMAI GTCTC 2 cut(s) 310, 544
BstMBI GATC 7 cut(s) 73, 105, 177, 318, 566, 799, 895
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 5 cut(s) 32, 226, 840, 849, 1029
BstNI CCWGG 2 cut(s) 555, 778
BstPI GGTNACC 1 cut(s) 676
BstSCI CCNGG 3 cut(s) 517, 553, 776
BstSFI CTRYAG 1 cut(s) 492
BstSLI GKGCMC 1 cut(s) 870
BstV1I GCAGC 4 cut(s) 922, 932, 952, 1032
BstV2I GAAGAC 1 cut(s) 822
BstX2I RGATCY 3 cut(s) 73, 318, 566
BstYI RGATCY 3 cut(s) 73, 318, 566
Bsu36I CCTNAGG 1 cut(s) 336
BsuI GTATCC 1 cut(s) 622
BsuRI GGCC 4 cut(s) 26, 233, 380, 641
BtgI CCRYGG 2 cut(s) 41, 999
BtgZI GCGATG 1 cut(s) 972
BtrI CACGTC 1 cut(s) 871
BtsCI GGATG 1 cut(s) 768
BtsIMutI CAGTG 3 cut(s) 309, 430, 945
Cac8I GCNNGC 3 cut(s) 207, 231, 286
CaiI CAGNNNCTG 1 cut(s) 417
CfoI GCGC 3 cut(s) 243, 333, 1025
Cfr10I RCCGGY 3 cut(s) 31, 284, 843
Cfr13I GGNCC 3 cut(s) 25, 110, 379
CseI GACGC 1 cut(s) 275
Csp6I GTAC 3 cut(s) 145, 927, 981
CviAII CATG 3 cut(s) 899, 1000, 1028
CviQI GTAC 3 cut(s) 145, 927, 981
DdeI CTNAG 2 cut(s) 221, 336
DpnI GATC 7 cut(s) 75, 107, 179, 320, 568, 801, 897
DpnII GATC 7 cut(s) 73, 105, 177, 318, 566, 799, 895
DraIII CACNNNGTG 1 cut(s) 874
Eam1104I CTCTTC 2 cut(s) 309, 853
EarI CTCTTC 2 cut(s) 309, 853
Eco130I CCWWGG 2 cut(s) 300, 999
Eco31I GGTCTC 2 cut(s) 310, 544
Eco47I GGWCC 1 cut(s) 110
Eco57I CTGAAG 2 cut(s) 333, 504
Eco81I CCTNAGG 1 cut(s) 336
Eco91I GGTNACC 1 cut(s) 676
EcoNI CCTNNNNNAGG 1 cut(s) 623
EcoO65I GGTNACC 1 cut(s) 676
EcoRI GAATTC 1 cut(s) 598
EcoRII CCWGG 2 cut(s) 553, 776
EcoT14I CCWWGG 2 cut(s) 300, 999
ErhI CCWWGG 2 cut(s) 300, 999
FaeI CATG 3 cut(s) 902, 1003, 1031
FaiI YATR 8 cut(s) 422, 532, 534, 888, 900, 974, 1001, 1029
FaqI GGGAC 1 cut(s) 473
FatI CATG 3 cut(s) 898, 999, 1027
FauNDI CATATG 1 cut(s) 532
FbaI TGATCA 2 cut(s) 799, 895
Fnu4HI GCNGC 9 cut(s) 92, 244, 360, 850, 921, 936, 963, 966, 1021
FokI GGATG 1 cut(s) 755
Fsp4HI GCNGC 9 cut(s) 92, 244, 360, 850, 921, 936, 963, 966, 1021
FspBI CTAG 3 cut(s) 56, 210, 216
GlaI GCGC 3 cut(s) 242, 332, 1024
GluI GCNGC 9 cut(s) 92, 244, 360, 850, 921, 936, 963, 966, 1021
HaeII RGCGCY 2 cut(s) 244, 334
HaeIII GGCC 4 cut(s) 26, 233, 380, 641
HapII CCGG 4 cut(s) 32, 285, 519, 844
HgaI GACGC 1 cut(s) 275
HhaI GCGC 3 cut(s) 243, 333, 1025
Hin1II CATG 3 cut(s) 902, 1003, 1031
Hin6I GCGC 3 cut(s) 241, 331, 1023
HinP1I GCGC 3 cut(s) 241, 331, 1023
HincII GTYRAC 2 cut(s) 739, 879
HindII GTYRAC 2 cut(s) 739, 879
HinfI GANTC 2 cut(s) 196, 821
HpaI GTTAAC 1 cut(s) 739
HpaII CCGG 4 cut(s) 32, 285, 519, 844
HphI GGTGA 8 cut(s) 115, 148, 184, 437, 604, 914, 988, 1022
Hpy166II GTNNAC 3 cut(s) 688, 739, 879
Hpy188I TCNGA 6 cut(s) 110, 195, 201, 484, 571, 625
Hpy188III TCNNGA 6 cut(s) 77, 130, 326, 512, 698, 803
Hpy8I GTNNAC 3 cut(s) 688, 739, 879
Hpy99I CGWCG 6 cut(s) 119, 239, 269, 695, 843, 875
HpyAV CCTTC 7 cut(s) 91, 127, 155, 579, 785, 899, 1034
HpyCH4III ACNGT 4 cut(s) 16, 45, 190, 419
HpyCH4IV ACGT 2 cut(s) 690, 870
HpyCH4V TGCA 4 cut(s) 411, 530, 768, 920
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 226, 840, 849, 1029
HpyF3I CTNAG 2 cut(s) 221, 336
HpySE526I ACGT 2 cut(s) 690, 870
Hsp92II CATG 3 cut(s) 902, 1003, 1031
HspAI GCGC 3 cut(s) 241, 331, 1023
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
Ksp22I TGATCA 2 cut(s) 799, 895
KspAI GTTAAC 1 cut(s) 739
Kzo9I GATC 7 cut(s) 73, 105, 177, 318, 566, 799, 895
LmnI GCTCC 1 cut(s) 514
Lsp1109I GCAGC 4 cut(s) 922, 932, 952, 1032
LweI GCATC 6 cut(s) 135, 466, 488, 777, 907, 949
MaeI CTAG 3 cut(s) 56, 210, 216
MaeII ACGT 2 cut(s) 690, 870
MaeIII GTNAC 2 cut(s) 610, 676
MalI GATC 7 cut(s) 75, 107, 179, 320, 568, 801, 897
MbiI CCGCTC 1 cut(s) 246
MboI GATC 7 cut(s) 73, 105, 177, 318, 566, 799, 895
MboII GAAGA 6 cut(s) 77, 187, 326, 827, 870, 987
MflI RGATCY 3 cut(s) 73, 318, 566
MhlI GDGCHC 2 cut(s) 432, 870
MluCI AATT 3 cut(s) 149, 257, 598
MlyI GAGTC 1 cut(s) 190
MreI CGCCGGCG 1 cut(s) 284
MroNI GCCGGC 1 cut(s) 284
MroXI GAANNNNTTC 1 cut(s) 656
MseI TTAA 1 cut(s) 738
MslI CAYNNNNRTG 2 cut(s) 891, 1032
MspA1I CMGCKG 2 cut(s) 923, 965
MspI CCGG 4 cut(s) 32, 285, 519, 844
MspR9I CCNGG 3 cut(s) 519, 555, 778
MvaI CCWGG 2 cut(s) 555, 778
MwoI GCNNNNNNNGC 5 cut(s) 32, 226, 840, 849, 1029
NaeI GCCGGC 1 cut(s) 286
NciI CCSGG 1 cut(s) 519
NcoI CCATGG 1 cut(s) 999
NdeI CATATG 1 cut(s) 532
NdeII GATC 7 cut(s) 73, 105, 177, 318, 566, 799, 895
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 3 cut(s) 902, 1003, 1031
NlaIV GGNNCC 2 cut(s) 112, 381
NmuCI GTSAC 1 cut(s) 610
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PdiI GCCGGC 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 656
PfeI GAWTC 1 cut(s) 821
PkrI GCNGC 9 cut(s) 93, 245, 361, 851, 922, 937, 964, 967, 1022
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Psp6I CCWGG 2 cut(s) 553, 776
PspEI GGTNACC 1 cut(s) 676
PspGI CCWGG 2 cut(s) 553, 776
PspN4I GGNNCC 2 cut(s) 112, 381
PspPI GGNCC 3 cut(s) 25, 110, 379
PstNI CAGNNNCTG 1 cut(s) 417
PsuI RGATCY 3 cut(s) 73, 318, 566
PvuII CAGCTG 1 cut(s) 923
RsaI GTAC 3 cut(s) 146, 928, 982
RsaNI GTAC 3 cut(s) 145, 927, 981
RseI CAYNNNNRTG 2 cut(s) 891, 1032
SaqAI TTAA 1 cut(s) 738
SatI GCNGC 9 cut(s) 92, 244, 360, 850, 921, 936, 963, 966, 1021
Sau3AI GATC 7 cut(s) 73, 105, 177, 318, 566, 799, 895
Sau96I GGNCC 3 cut(s) 25, 110, 379
ScaI AGTACT 1 cut(s) 982
SchI GAGTC 1 cut(s) 190
ScrFI CCNGG 3 cut(s) 519, 555, 778
SduI GDGCHC 2 cut(s) 432, 870
SfaNI GCATC 6 cut(s) 135, 466, 488, 777, 907, 949
SfcI CTRYAG 1 cut(s) 492
SgrAI CRCCGGYG 2 cut(s) 284, 843
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 2 cut(s) 891, 1032
SmlI CTYRAG 4 cut(s) 326, 547, 711, 940
SmoI CTYRAG 4 cut(s) 326, 547, 711, 940
Sse9I AATT 3 cut(s) 149, 257, 598
SsiI CCGC 9 cut(s) 92, 244, 359, 449, 649, 849, 963, 1008, 1032
SspMI CTAG 3 cut(s) 56, 210, 216
StyD4I CCNGG 3 cut(s) 517, 553, 776
StyI CCWWGG 2 cut(s) 300, 999
TaaI ACNGT 4 cut(s) 16, 45, 190, 419
TaiI ACGT 2 cut(s) 693, 873
TaqI TCGA 3 cut(s) 237, 440, 660
TasI AATT 3 cut(s) 149, 257, 598
TatI WGTACW 2 cut(s) 144, 980
TauI GCSGC 5 cut(s) 94, 246, 362, 852, 965
TfiI GAWTC 1 cut(s) 821
Tru1I TTAA 1 cut(s) 738
Tru9I TTAA 1 cut(s) 738
TscAI CASTG 3 cut(s) 316, 437, 952
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 4 cut(s) 920, 935, 965, 1020
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 1 cut(s) 174
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 3 cut(s) 316, 437, 952
VpaK11BI GGWCC 1 cut(s) 110
XagI CCTNNNNNAGG 1 cut(s) 623
XapI RAATTY 3 cut(s) 149, 257, 598
XmnI GAANNNNTTC 1 cut(s) 656
XspI CTAG 3 cut(s) 56, 210, 216
ZrmI AGTACT 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.