FvH4_3g37040

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017633
Physical Location & Seq
Reverse (-)
31771191 .. 31771880
690 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37040.t1

Sequence Viewer

Length: 288 bp
ATGAAGAGCAGGAAAACCATCTGCTTCTGCATCCCTGCCTGGAAACCCAAAGAAGGGAAAGATCAAGAGAAGCACGAAGACGAATCCCATTCCAGCTCTCGTCTCCAGCACGGCAAGAGAAGAGGAGGGCACGTCGTGTCAACGGCTCATAATGATGATCATGGTGAAGGCAACACCGATGCAGCTGGTACTACTGCTGCCTCAAGCACTGGTGTCGGCGCTGCCGCTGTTGTTATGGTGAGTACTGCCAACATTTCTTCCATGGACGGCGGTGGTGGTGAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

96

Amino Acids

9.78

Weight (kDa)

6.57

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37040 FvH4_5g15961
prunus_persica Prupe.6G068300_v2.0.a1
pyrus_communis pycom11g07830
rosa_chinensis RchiOBHm_Chr5g0066451
rosa_laevigata RLG00000035867
rosa_roxburghii Rroxscaffold_1G00014420 Rroxscaffold_1G00014430
rosa_samantha Rh5AG437400 Rh5BG453600 Rh5CG475900 Rh5DG468700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 225, 270
AdeI CACNNNGTG 1 cut(s) 136
AfaI GTAC 2 cut(s) 190, 244
AfiI CCNNNNNNNGG 2 cut(s) 53, 54
AjiI CACGTC 1 cut(s) 133
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 2 cut(s) 96, 185
AluI AGCT 2 cut(s) 96, 185
Alw26I GTCTC 1 cut(s) 107
ApeKI GCWGC 3 cut(s) 182, 197, 221
AspLEI GCGC 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 176, 250
BaeGI GKGCMC 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 184, 194, 208
BccI CCATC 1 cut(s) 26
BceAI ACGGC 3 cut(s) 127, 159, 283
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 1 cut(s) 40
BclI TGATCA 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 107
BfoI RGCGCY 1 cut(s) 222
BisI GCNGC 4 cut(s) 183, 198, 222, 225
BlsI GCNGC 4 cut(s) 184, 199, 223, 226
BmcAI AGTACT 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 40
BmgBI CACGTC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 2 cut(s) 39, 169
BpiI GAAGAC 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 54
Bse1I ACTGG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 2 cut(s) 53, 54
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 138
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 3 cut(s) 184, 194, 208
BslI CCNNNNNNNGG 2 cut(s) 53, 54
BsmAI GTCTC 1 cut(s) 107
BsmBI CGTCTC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 2 cut(s) 61, 157
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 2 cut(s) 225, 270
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 2 cut(s) 61, 157
BssT1I CCWWGG 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 115
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 1 cut(s) 30
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 2 cut(s) 64, 160
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 2 cut(s) 61, 157
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstSLI GKGCMC 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 184, 194, 208
BstV2I GAAGAC 1 cut(s) 84
BtgI CCRYGG 1 cut(s) 261
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 207
CfoI GCGC 1 cut(s) 221
Csp6I GTAC 2 cut(s) 189, 243
CviAII CATG 2 cut(s) 161, 262
CviJI RGCY 4 cut(s) 96, 146, 185, 285
CviKI_1 RGCY 4 cut(s) 96, 146, 185, 285
CviQI GTAC 2 cut(s) 189, 243
DpnI GATC 2 cut(s) 63, 159
DpnII GATC 2 cut(s) 61, 157
DraIII CACNNNGTG 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 107
FaeI CATG 2 cut(s) 164, 265
FaiI YATR 4 cut(s) 150, 162, 236, 263
FatI CATG 2 cut(s) 160, 261
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 4 cut(s) 183, 198, 222, 225
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 4 cut(s) 183, 198, 222, 225
GlaI GCGC 1 cut(s) 220
GluI GCNGC 4 cut(s) 183, 198, 222, 225
GsuI CTGGAG 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 222
HhaI GCGC 1 cut(s) 221
Hin1II CATG 2 cut(s) 164, 265
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 1 cut(s) 83
HphI GGTGA 2 cut(s) 176, 250
Hpy166II GTNNAC 1 cut(s) 141
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 1 cut(s) 141
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 3 cut(s) 47, 161, 275
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 2 cut(s) 30, 182
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 2 cut(s) 164, 265
HspAI GCGC 1 cut(s) 219
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 2 cut(s) 61, 157
LpnPI CCDG 7 cut(s) 25, 48, 52, 106, 119, 171, 195
Lsp1109I GCAGC 3 cut(s) 184, 194, 208
LweI GCATC 2 cut(s) 39, 169
MaeII ACGT 1 cut(s) 132
MalI GATC 2 cut(s) 63, 159
MboI GATC 2 cut(s) 61, 157
MboII GAAGA 4 cut(s) 16, 89, 132, 249
MhlI GDGCHC 1 cut(s) 132
MnlI CCTC 3 cut(s) 116, 119, 211
MslI CAYNNNNRTG 1 cut(s) 153
MspA1I CMGCKG 2 cut(s) 185, 227
MspR9I CCNGG 1 cut(s) 40
MvaI CCWGG 1 cut(s) 40
NcoI CCATGG 1 cut(s) 261
NdeII GATC 2 cut(s) 61, 157
NlaIII CATG 2 cut(s) 164, 265
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 4 cut(s) 184, 199, 223, 226
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 2 cut(s) 190, 244
RsaNI GTAC 2 cut(s) 189, 243
RseI CAYNNNNRTG 1 cut(s) 153
SatI GCNGC 4 cut(s) 183, 198, 222, 225
Sau3AI GATC 2 cut(s) 61, 157
ScaI AGTACT 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 1 cut(s) 132
SetI ASST 3 cut(s) 98, 135, 187
SfaNI GCATC 2 cut(s) 39, 169
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
SsiI CCGC 2 cut(s) 225, 270
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 261
TaiI ACGT 1 cut(s) 135
TatI WGTACW 1 cut(s) 242
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 83
TscAI CASTG 1 cut(s) 214
TseI GCWGC 3 cut(s) 182, 197, 221
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 214
ZrmI AGTACT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.