FvH4_5g15961

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017633
Physical Location & Seq
Forward (+)
9045389 .. 9046959
1571 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15961.t1

Sequence Viewer

Length: 405 bp
ATGAAGAGCAGGAAAACCATCTGCTTCTGTATCCCTGCCTGGAAACCCAAAGAAGGGAATGATCAAGAGATTGAAGAGAAGCACGAAGACGAATCCCATTCCAGCTCTCGTCGCCGGCGCGGCAAGAGAAGAGAAGAGGAGGGCATGTCGTGTCAACGGCTCATAATGATGATCATGGTGAAGGCAACACCGATGCAGCTGGTGCTACTGCTGCCTCAAGCACTAGTGTCGGCGATGCCGCTGTTGTTATGGCAAGATCTCCGGCCGACCTCCATCGTCCTCAGATCCTCGATAGATTTGCACCTCACCGACGAATCACCTTCATCGTCACCGTCTCGGACTCATAGGAGAAGGTGCGGAGAAGAAGACGACGAGGCTGATAGGAGAAGGTGCGGCTGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

135

Amino Acids

15.66

Weight (kDa)

8.97

Isoelectric Point (pI)

106.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37040 FvH4_5g15961
prunus_persica Prupe.6G068300_v2.0.a1
pyrus_communis pycom11g07830
rosa_chinensis RchiOBHm_Chr5g0066451
rosa_laevigata RLG00000035867
rosa_roxburghii Rroxscaffold_1G00014420 Rroxscaffold_1G00014430
rosa_samantha Rh5AG437400 Rh5BG453600 Rh5CG475900 Rh5DG468700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 120
AciI CCGC 4 cut(s) 120, 239, 357, 393
AclWI GGATC 1 cut(s) 279
AcoI YGGCCR 1 cut(s) 263
AfiI CCNNNNNNNGG 2 cut(s) 53, 54
AgsI TTSAA 1 cut(s) 74
AhlI ACTAGT 1 cut(s) 223
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 2 cut(s) 105, 199
AluI AGCT 2 cut(s) 105, 199
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 1 cut(s) 279
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 2 cut(s) 196, 211
AspLEI GCGC 1 cut(s) 120
AsuHPI GGTGA 4 cut(s) 190, 298, 309, 321
BbsI GAAGAC 2 cut(s) 93, 372
BbvI GCAGC 2 cut(s) 198, 208
BccI CCATC 2 cut(s) 26, 281
BceAI ACGGC 1 cut(s) 173
BcgI CGANNNNNNTGC 4 cut(s) 210, 244, 280, 314
BciT130I CCWGG 1 cut(s) 40
BciVI GTATCC 1 cut(s) 41
BclI TGATCA 2 cut(s) 61, 171
BcoDI GTCTC 1 cut(s) 339
BcuI ACTAGT 1 cut(s) 223
BfaI CTAG 1 cut(s) 224
BfuI GTATCC 1 cut(s) 41
BglI GCCNNNNNGGC 1 cut(s) 120
BglII AGATCT 1 cut(s) 256
BisI GCNGC 5 cut(s) 121, 197, 212, 239, 394
BlsI GCNGC 5 cut(s) 122, 198, 213, 240, 395
Bme1390I CCNGG 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 2 cut(s) 183, 225
BpiI GAAGAC 2 cut(s) 93, 372
BpuEI CTTGAG 1 cut(s) 201
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 54
Bse118I RCCGGY 1 cut(s) 114
BseBI CCWGG 1 cut(s) 40
BseLI CCNNNNNNNGG 2 cut(s) 53, 54
BseMII CTCAG 1 cut(s) 295
BseRI GAGGAG 1 cut(s) 152
BseX3I CGGCCG 1 cut(s) 263
BseXI GCAGC 2 cut(s) 198, 208
Bsh1236I CGCG 1 cut(s) 120
Bsh1285I CGRYCG 1 cut(s) 266
BshFI GGCC 1 cut(s) 265
BsiEI CGRYCG 1 cut(s) 266
BsiSI CCGG 2 cut(s) 115, 262
BslI CCNNNNNNNGG 2 cut(s) 53, 54
BsmAI GTCTC 1 cut(s) 339
BsmBI CGTCTC 1 cut(s) 339
BsnI GGCC 1 cut(s) 265
Bsp143I GATC 4 cut(s) 61, 171, 256, 284
BspACI CCGC 4 cut(s) 120, 239, 357, 393
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 294
BspFNI CGCG 1 cut(s) 120
BspPI GGATC 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 114
BssAI RCCGGY 1 cut(s) 114
BssMI GATC 4 cut(s) 61, 171, 256, 284
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 333
Bst6I CTCTTC 3 cut(s) 69, 124, 129
BstAPI GCANNNNNTGC 1 cut(s) 202
BstC8I GCNNGC 2 cut(s) 116, 398
BstDEI CTNAG 1 cut(s) 281
BstFNI CGCG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 4 cut(s) 64, 174, 259, 287
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 4 cut(s) 61, 171, 256, 284
BstMCI CGRYCG 1 cut(s) 266
BstMWI GCNNNNNNNGC 4 cut(s) 111, 120, 202, 211
BstNI CCWGG 1 cut(s) 40
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 38
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 198, 208
BstV2I GAAGAC 2 cut(s) 93, 372
BstX2I RGATCY 2 cut(s) 256, 284
BstYI RGATCY 2 cut(s) 256, 284
BstZI CGGCCG 1 cut(s) 263
BsuI GTATCC 1 cut(s) 41
BsuRI GGCC 1 cut(s) 265
BtgZI GCGATG 1 cut(s) 248
Cac8I GCNNGC 2 cut(s) 116, 398
CfoI GCGC 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 114
CviAII CATG 2 cut(s) 145, 175
CviJI RGCY 6 cut(s) 105, 160, 199, 265, 377, 396
CviKI_1 RGCY 6 cut(s) 105, 160, 199, 265, 377, 396
DdeI CTNAG 1 cut(s) 281
DpnI GATC 4 cut(s) 63, 173, 258, 286
DpnII GATC 4 cut(s) 61, 171, 256, 284
EaeI YGGCCR 1 cut(s) 263
EagI CGGCCG 1 cut(s) 263
Eam1104I CTCTTC 3 cut(s) 69, 124, 129
EarI CTCTTC 3 cut(s) 69, 124, 129
EclXI CGGCCG 1 cut(s) 263
Eco52I CGGCCG 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 2 cut(s) 148, 178
FaiI YATR 5 cut(s) 146, 164, 176, 250, 345
FatI CATG 2 cut(s) 144, 174
FbaI TGATCA 2 cut(s) 61, 171
Fnu4HI GCNGC 5 cut(s) 121, 197, 212, 239, 394
Fsp4HI GCNGC 5 cut(s) 121, 197, 212, 239, 394
FspBI CTAG 1 cut(s) 224
GlaI GCGC 1 cut(s) 119
GluI GCNGC 5 cut(s) 121, 197, 212, 239, 394
HaeIII GGCC 1 cut(s) 265
HapII CCGG 2 cut(s) 115, 262
HhaI GCGC 1 cut(s) 120
Hin1II CATG 2 cut(s) 148, 178
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HincII GTYRAC 1 cut(s) 155
HindII GTYRAC 1 cut(s) 155
HinfI GANTC 3 cut(s) 92, 314, 340
HpaII CCGG 2 cut(s) 115, 262
HphI GGTGA 4 cut(s) 190, 298, 309, 321
Hpy166II GTNNAC 1 cut(s) 155
Hpy188I TCNGA 2 cut(s) 284, 339
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 1 cut(s) 155
Hpy99I CGWCG 3 cut(s) 114, 314, 374
HpyAV CCTTC 5 cut(s) 47, 175, 330, 345, 381
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4V TGCA 2 cut(s) 196, 301
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 120, 202, 211
HpyF3I CTNAG 1 cut(s) 281
Hsp92II CATG 2 cut(s) 148, 178
HspAI GCGC 1 cut(s) 118
KroI GCCGGC 1 cut(s) 114
KroNI GCCGGC 1 cut(s) 116
Ksp22I TGATCA 2 cut(s) 61, 171
Kzo9I GATC 4 cut(s) 61, 171, 256, 284
LpnPI CCDG 8 cut(s) 25, 48, 52, 115, 128, 185, 275, 382
Lsp1109I GCAGC 2 cut(s) 198, 208
LweI GCATC 2 cut(s) 183, 225
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 327
MalI GATC 4 cut(s) 63, 173, 258, 286
MboI GATC 4 cut(s) 61, 171, 256, 284
MboII GAAGA 7 cut(s) 16, 86, 98, 141, 146, 374, 377
MflI RGATCY 2 cut(s) 256, 284
MlyI GAGTC 1 cut(s) 334
MnlI CCTC 8 cut(s) 130, 133, 225, 280, 290, 298, 314, 367
MreI CGCCGGCG 1 cut(s) 114
MroNI GCCGGC 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 167
MspA1I CMGCKG 2 cut(s) 199, 241
MspI CCGG 2 cut(s) 115, 262
MspR9I CCNGG 1 cut(s) 40
MvaI CCWGG 1 cut(s) 40
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 4 cut(s) 111, 120, 202, 211
NaeI GCCGGC 1 cut(s) 116
NdeII GATC 4 cut(s) 61, 171, 256, 284
NgoMIV GCCGGC 1 cut(s) 114
NlaIII CATG 2 cut(s) 148, 178
NmuCI GTSAC 1 cut(s) 327
NspI RCATGY 1 cut(s) 148
PdiI GCCGGC 1 cut(s) 116
PfeI GAWTC 2 cut(s) 92, 314
PkrI GCNGC 5 cut(s) 122, 198, 213, 240, 395
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PsuI RGATCY 2 cut(s) 256, 284
PvuII CAGCTG 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 167
SatI GCNGC 5 cut(s) 121, 197, 212, 239, 394
Sau3AI GATC 4 cut(s) 61, 171, 256, 284
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 1 cut(s) 40
SetI ASST 7 cut(s) 107, 201, 272, 306, 322, 356, 392
SfaNI GCATC 2 cut(s) 183, 225
SgrAI CRCCGGYG 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
SpeI ACTAGT 1 cut(s) 223
SsiI CCGC 4 cut(s) 120, 239, 357, 393
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 333
TaqI TCGA 1 cut(s) 290
TauI GCSGC 3 cut(s) 123, 241, 396
TfiI GAWTC 2 cut(s) 92, 314
TseFI GTSAC 1 cut(s) 327
TseI GCWGC 2 cut(s) 196, 211
Tsp45I GTSAC 1 cut(s) 327
TspDTI ATGAA 2 cut(s) 17, 312
XceI RCATGY 1 cut(s) 148
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.