pycom11g07830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0017633
Physical Location & Seq
Forward (+)
5976529 .. 5976846
318 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07830.1

Sequence Viewer

Length: 318 bp
ATGAAGAGCAAAACCACTTGTTTCTGCATACCTACAGGCCGCAAACACAAAGATCATCAAGAGAAACTGCAGGATGATCGGTCGTCTCATTCCAGCTCTCGTCGAAGCCGCAAGAGTAGAGGACATCATGATGGTGCAACGGCTCCTGGTGGTGGTCAGGTTGATGGAGGCACCACCACAGCCGCCGCAGCCTCAAGCAGTGATGTTGGTAGCGCAGCTGTTGTAGTGATGACTGCTGCCCACCTGTCTATTATGGATGGCGGTGACAGTGGTAGTGGTCATGGTGGTGGCGACGGCGGTGGTGGCAACGGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

10.32

Weight (kDa)

8.74

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37040 FvH4_5g15961
prunus_persica Prupe.6G068300_v2.0.a1
pyrus_communis pycom11g07830
rosa_chinensis RchiOBHm_Chr5g0066451
rosa_laevigata RLG00000035867
rosa_roxburghii Rroxscaffold_1G00014420 Rroxscaffold_1G00014430
rosa_samantha Rh5AG437400 Rh5BG453600 Rh5CG475900 Rh5DG468700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 170
AciI CCGC 6 cut(s) 40, 109, 183, 186, 261, 297
AfiI CCNNNNNNNGG 1 cut(s) 152
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 2 cut(s) 96, 218
AluI AGCT 2 cut(s) 96, 218
Alw26I GTCTC 1 cut(s) 90
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 3 cut(s) 188, 215, 236
AspLEI GCGC 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 275
BanI GGYRCC 1 cut(s) 170
BbvI GCAGC 3 cut(s) 200, 223, 227
BccI CCATC 3 cut(s) 125, 158, 251
BceAI ACGGC 2 cut(s) 156, 310
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BciT130I CCWGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 90
BfmI CTRYAG 2 cut(s) 33, 68
BisI GCNGC 7 cut(s) 40, 109, 183, 186, 189, 216, 237
BlsI GCNGC 7 cut(s) 41, 110, 184, 187, 190, 217, 238
Bme1390I CCNGG 1 cut(s) 147
BmiI GGNNCC 2 cut(s) 144, 172
BmrFI CCNGG 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 178
Bsc4I CCNNNNNNNGG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 147
BseGI GGATG 2 cut(s) 79, 262
BseLI CCNNNNNNNGG 1 cut(s) 152
BseXI GCAGC 3 cut(s) 200, 223, 227
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 170
BsiEI CGRYCG 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 90
BsmBI CGTCTC 1 cut(s) 90
BsnI GGCC 1 cut(s) 39
Bsp143I GATC 2 cut(s) 52, 76
BspACI CCGC 6 cut(s) 40, 109, 183, 186, 261, 297
BspANI GGCC 1 cut(s) 39
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 144, 172
BspMAI CTGCAG 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 170
BssMI GATC 2 cut(s) 52, 76
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 269, 311
BstF5I GGATG 2 cut(s) 79, 262
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 2 cut(s) 55, 79
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 2 cut(s) 52, 76
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 2 cut(s) 188, 303
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstSFI CTRYAG 2 cut(s) 33, 68
BstV1I GCAGC 3 cut(s) 200, 223, 227
BsuRI GGCC 1 cut(s) 39
BtsCI GGATG 2 cut(s) 79, 262
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 2 cut(s) 205, 274
CciI TCATGA 1 cut(s) 127
CfoI GCGC 1 cut(s) 215
CviAII CATG 2 cut(s) 128, 281
CviJI RGCY 7 cut(s) 39, 96, 108, 143, 182, 191, 218
CviKI_1 RGCY 7 cut(s) 39, 96, 108, 143, 182, 191, 218
DpnI GATC 2 cut(s) 54, 78
DpnII GATC 2 cut(s) 52, 76
EcoRII CCWGG 1 cut(s) 145
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 2 cut(s) 131, 284
FaiI YATR 4 cut(s) 29, 129, 254, 282
FatI CATG 2 cut(s) 127, 280
Fnu4HI GCNGC 7 cut(s) 40, 109, 183, 186, 189, 216, 237
FokI GGATG 2 cut(s) 86, 269
Fsp4HI GCNGC 7 cut(s) 40, 109, 183, 186, 189, 216, 237
GlaI GCGC 1 cut(s) 214
GluI GCNGC 7 cut(s) 40, 109, 183, 186, 189, 216, 237
HaeIII GGCC 1 cut(s) 39
HhaI GCGC 1 cut(s) 215
Hin1II CATG 2 cut(s) 131, 284
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HphI GGTGA 1 cut(s) 275
Hpy188III TCNNGA 2 cut(s) 59, 128
Hpy99I CGWCG 2 cut(s) 105, 296
HpyCH4III ACNGT 2 cut(s) 269, 311
HpyCH4V TGCA 3 cut(s) 27, 70, 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 303
Hsp92II CATG 2 cut(s) 131, 284
HspAI GCGC 1 cut(s) 213
Kzo9I GATC 2 cut(s) 52, 76
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 7 cut(s) 21, 56, 106, 132, 143, 159, 257
Lsp1109I GCAGC 3 cut(s) 200, 223, 227
MaeIII GTNAC 1 cut(s) 263
MalI GATC 2 cut(s) 54, 78
MboI GATC 2 cut(s) 52, 76
MboII GAAGA 1 cut(s) 16
MnlI CCTC 3 cut(s) 113, 161, 202
MslI CAYNNNNRTG 3 cut(s) 129, 132, 285
MspA1I CMGCKG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 188, 303
NdeII GATC 2 cut(s) 52, 76
NlaIII CATG 2 cut(s) 131, 284
NlaIV GGNNCC 2 cut(s) 144, 172
NmuCI GTSAC 1 cut(s) 263
PagI TCATGA 1 cut(s) 127
PkrI GCNGC 7 cut(s) 41, 110, 184, 187, 190, 217, 238
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 2 cut(s) 144, 172
PstI CTGCAG 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 218
RseI CAYNNNNRTG 3 cut(s) 129, 132, 285
SatI GCNGC 7 cut(s) 40, 109, 183, 186, 189, 216, 237
Sau3AI GATC 2 cut(s) 52, 76
ScrFI CCNGG 1 cut(s) 147
SetI ASST 5 cut(s) 34, 98, 162, 220, 246
SfcI CTRYAG 2 cut(s) 33, 68
SmiMI CAYNNNNRTG 3 cut(s) 129, 132, 285
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
SsiI CCGC 6 cut(s) 40, 109, 183, 186, 261, 297
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 2 cut(s) 269, 311
TaqI TCGA 1 cut(s) 103
TaqII GACCGA 1 cut(s) 69
TauI GCSGC 4 cut(s) 42, 111, 185, 188
TscAI CASTG 2 cut(s) 205, 274
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 3 cut(s) 188, 215, 236
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 205, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.