Prupe.6G068300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017633
Physical Location & Seq
Forward (+)
4697613 .. 4697903
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G068300.1

Sequence Viewer

Length: 291 bp
ATGAAGGGGAAAACCATTTGCTTCTGCATTCCTGCAGGCCGCAAACACAAAGATAATGAAGAGAAGCATGATGAGTCCTCTCATTCCAACTCTCGCCGAAGCCGCAAGAGTAGAGGACATGTTGTTGCAACAGGTACTAGTGATCACGGTGAAGGCAATGATGGAGACACCACGGCTGCCGCTTCAGCGCCAACAATGGCCGCGGCAGCTGTAATGATGAGTACAGCCCACATGTCAACTATGGATGGCGATGGCGGTGGTGGCAGTGCTCATGGTGGCGGCGATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

9.7

Weight (kDa)

6.64

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37040 FvH4_5g15961
prunus_persica Prupe.6G068300_v2.0.a1
pyrus_communis pycom11g07830
rosa_chinensis RchiOBHm_Chr5g0066451
rosa_laevigata RLG00000035867
rosa_roxburghii Rroxscaffold_1G00014420 Rroxscaffold_1G00014430
rosa_samantha Rh5AG437400 Rh5BG453600 Rh5CG475900 Rh5DG468700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 203
AciI CCGC 7 cut(s) 40, 103, 180, 201, 203, 255, 279
AcoI YGGCCR 1 cut(s) 198
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 2 cut(s) 136, 223
AflIII ACRYGT 2 cut(s) 118, 231
AhlI ACTAGT 1 cut(s) 137
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 1 cut(s) 159
AoxI GGCC 2 cut(s) 37, 198
ApeKI GCWGC 2 cut(s) 176, 206
AspLEI GCGC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 2 cut(s) 163, 218
BccI CCATC 4 cut(s) 155, 239, 245, 278
BceAI ACGGC 1 cut(s) 189
BclI TGATCA 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 159
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 191
BisI GCNGC 8 cut(s) 40, 103, 177, 180, 201, 204, 207, 280
BlsI GCNGC 8 cut(s) 41, 104, 178, 181, 202, 205, 208, 281
BsaJI CCNNGG 2 cut(s) 171, 201
Bse3DI GCAATG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 171, 201
BseGI GGATG 1 cut(s) 250
BseMI GCAATG 1 cut(s) 163
BseXI GCAGC 2 cut(s) 163, 218
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 2 cut(s) 39, 200
BsiHKAI GWGCWC 1 cut(s) 271
BsmAI GTCTC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 27
BsnI GGCC 2 cut(s) 39, 200
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 7 cut(s) 40, 103, 180, 201, 203, 255, 279
BspANI GGCC 2 cut(s) 39, 200
BspFNI CGCG 1 cut(s) 203
BspMAI CTGCAG 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 163
BssECI CCNNGG 2 cut(s) 171, 201
BssMI GATC 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 37
BstDSI CCRYGG 2 cut(s) 171, 201
BstF5I GGATG 1 cut(s) 250
BstFNI CGCG 1 cut(s) 203
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 4 cut(s) 102, 185, 206, 261
BstNSI RCATGY 2 cut(s) 122, 235
BstSFI CTRYAG 1 cut(s) 33
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 163, 218
BsuRI GGCC 2 cut(s) 39, 200
BtgI CCRYGG 2 cut(s) 171, 201
BtgZI GCGATG 1 cut(s) 264
BtsCI GGATG 1 cut(s) 250
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 37
CfoI GCGC 1 cut(s) 190
Cfr42I CCGCGG 1 cut(s) 204
Csp6I GTAC 2 cut(s) 135, 222
CviAII CATG 4 cut(s) 68, 119, 232, 272
CviJI RGCY 6 cut(s) 39, 102, 176, 200, 209, 227
CviKI_1 RGCY 6 cut(s) 39, 102, 176, 200, 209, 227
CviQI GTAC 2 cut(s) 135, 222
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 168
FaeI CATG 4 cut(s) 71, 122, 235, 275
FaiI YATR 5 cut(s) 69, 120, 233, 242, 273
FatI CATG 4 cut(s) 67, 118, 231, 271
FbaI TGATCA 1 cut(s) 142
Fnu4HI GCNGC 8 cut(s) 40, 103, 177, 180, 201, 204, 207, 280
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 8 cut(s) 40, 103, 177, 180, 201, 204, 207, 280
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 189
GluI GCNGC 8 cut(s) 40, 103, 177, 180, 201, 204, 207, 280
HaeII RGCGCY 1 cut(s) 191
HaeIII GGCC 2 cut(s) 39, 200
HhaI GCGC 1 cut(s) 190
Hin1II CATG 4 cut(s) 71, 122, 235, 275
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HinfI GANTC 1 cut(s) 74
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 237
Hpy8I GTNNAC 1 cut(s) 237
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4V TGCA 3 cut(s) 27, 35, 128
HpyF10VI GCNNNNNNNGC 4 cut(s) 102, 185, 206, 261
Hsp92II CATG 4 cut(s) 71, 122, 235, 275
HspAI GCGC 1 cut(s) 188
Ksp22I TGATCA 1 cut(s) 142
KspI CCGCGG 1 cut(s) 204
Kzo9I GATC 1 cut(s) 142
LpnPI CCDG 3 cut(s) 21, 45, 117
Lsp1109I GCAGC 2 cut(s) 163, 218
MaeI CTAG 1 cut(s) 138
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 271
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 2 cut(s) 88, 107
MspA1I CMGCKG 2 cut(s) 203, 209
Mva1269I GAATGC 1 cut(s) 27
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 4 cut(s) 102, 185, 206, 261
NdeII GATC 1 cut(s) 142
NlaIII CATG 4 cut(s) 71, 122, 235, 275
NspI RCATGY 2 cut(s) 122, 235
PciI ACATGT 2 cut(s) 118, 231
PctI GAATGC 1 cut(s) 27
PkrI GCNGC 8 cut(s) 41, 104, 178, 181, 202, 205, 208, 281
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PscI ACATGT 2 cut(s) 118, 231
PstI CTGCAG 1 cut(s) 37
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 2 cut(s) 136, 223
RsaNI GTAC 2 cut(s) 135, 222
SacII CCGCGG 1 cut(s) 204
SatI GCNGC 8 cut(s) 40, 103, 177, 180, 201, 204, 207, 280
Sau3AI GATC 1 cut(s) 142
SbfI CCTGCAGG 1 cut(s) 37
SchI GAGTC 1 cut(s) 83
SdaI CCTGCAGG 1 cut(s) 37
SduI GDGCHC 1 cut(s) 271
SetI ASST 2 cut(s) 136, 211
SfcI CTRYAG 1 cut(s) 33
Sfr303I CCGCGG 1 cut(s) 204
SgrBI CCGCGG 1 cut(s) 204
SpeI ACTAGT 1 cut(s) 137
Sse8387I CCTGCAGG 1 cut(s) 37
SsiI CCGC 7 cut(s) 40, 103, 180, 201, 203, 255, 279
SspMI CTAG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 149
TatI WGTACW 1 cut(s) 221
TauI GCSGC 6 cut(s) 42, 105, 182, 203, 206, 282
TscAI CASTG 1 cut(s) 271
TseI GCWGC 2 cut(s) 176, 206
TspDTI ATGAA 2 cut(s) 17, 72
TspRI CASTG 1 cut(s) 271
XceI RCATGY 2 cut(s) 122, 235
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.