Rroxscaffold_1G00014420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017633
Physical Location & Seq
Forward (+)
17846886 .. 17847185
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014420.1

Sequence Viewer

Length: 300 bp
ATGAAGAGCAAGAAAACGATCTGCTTCTTCTGCATCCCTTCCTGGAAATACAACGAAGAGAATGATCAAGAGAAGCACGACGAAGAATCCCATTCCAGCTCTCGTGGTCGGCGCGGCAAGAGAAGAGGAGGAAACGTCGTCTCCTCATCTCTTAGTGATGAACATGCTGAAGGTAACACCGGTACAAGTACTACTACCGCCTCAAGCAATGATGTTGGCGCCGCGGCTGTTGTTATGGTGAGTACGGCCAACTTTTATTCCACCGACGGTGGTAACGCTGATGGTGGCGGCGATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.42

Weight (kDa)

5.51

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37040 FvH4_5g15961
prunus_persica Prupe.6G068300_v2.0.a1
pyrus_communis pycom11g07830
rosa_chinensis RchiOBHm_Chr5g0066451
rosa_laevigata RLG00000035867
rosa_roxburghii Rroxscaffold_1G00014420 Rroxscaffold_1G00014430
rosa_samantha Rh5AG437400 Rh5BG453600 Rh5CG475900 Rh5DG468700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 218
AccII CGCG 2 cut(s) 114, 224
AciI CCGC 5 cut(s) 114, 198, 222, 224, 288
AcoI YGGCCR 1 cut(s) 246
AcuI CTGAAG 1 cut(s) 189
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 3 cut(s) 184, 190, 244
AgeI ACCGGT 1 cut(s) 179
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 145
AoxI GGCC 1 cut(s) 246
AsiGI ACCGGT 1 cut(s) 179
AspLEI GCGC 2 cut(s) 114, 221
AsuHPI GGTGA 1 cut(s) 250
BanI GGYRCC 1 cut(s) 218
BauI CACGAG 1 cut(s) 102
BccI CCATC 2 cut(s) 275, 287
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 43
BclI TGATCA 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 145
BfoI RGCGCY 1 cut(s) 222
BisI GCNGC 4 cut(s) 115, 222, 225, 289
BlsI GCNGC 4 cut(s) 116, 223, 226, 290
BmcAI AGTACT 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 179
BsaXI ACNNNNNCTCC 4 cut(s) 120, 125, 150, 155
Bse118I RCCGGY 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 33
BseMI GCAATG 1 cut(s) 214
BseRI GAGGAG 2 cut(s) 133, 141
Bsh1236I CGCG 2 cut(s) 114, 224
BshFI GGCC 1 cut(s) 248
BshNI GGYRCC 1 cut(s) 218
BshTI ACCGGT 1 cut(s) 179
BsiSI CCGG 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 145
BsmBI CGTCTC 1 cut(s) 145
BsnI GGCC 1 cut(s) 248
Bsp143I GATC 2 cut(s) 18, 64
BspACI CCGC 5 cut(s) 114, 198, 222, 224, 288
BspANI GGCC 1 cut(s) 248
BspFNI CGCG 2 cut(s) 114, 224
BspLI GGNNCC 1 cut(s) 220
BspT107I GGYRCC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 2 cut(s) 18, 64
BssNI GRCGYC 1 cut(s) 219
BssSI CACGAG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 2 cut(s) 51, 118
BstACI GRCGYC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 152
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 2 cut(s) 114, 224
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 2 cut(s) 114, 221
BstKTI GATC 2 cut(s) 21, 67
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 2 cut(s) 18, 64
BstMWI GCNNNNNNNGC 2 cut(s) 30, 294
BstNI CCWGG 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 41
BstUI CGCG 2 cut(s) 114, 224
BsuRI GGCC 1 cut(s) 248
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 33
CfoI GCGC 2 cut(s) 114, 221
Cfr10I RCCGGY 1 cut(s) 179
Cfr42I CCGCGG 1 cut(s) 225
Csp6I GTAC 3 cut(s) 183, 189, 243
CspAI ACCGGT 1 cut(s) 179
CviAII CATG 1 cut(s) 164
CviJI RGCY 4 cut(s) 99, 227, 248, 297
CviKI_1 RGCY 4 cut(s) 99, 227, 248, 297
CviQI GTAC 3 cut(s) 183, 189, 243
DdeI CTNAG 1 cut(s) 152
DinI GGCGCC 1 cut(s) 220
DpnI GATC 2 cut(s) 20, 66
DpnII GATC 2 cut(s) 18, 64
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 2 cut(s) 51, 118
EarI CTCTTC 2 cut(s) 51, 118
Eco57I CTGAAG 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 41
EgeI GGCGCC 1 cut(s) 220
EheI GGCGCC 1 cut(s) 220
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 1 cut(s) 167
FaiI YATR 2 cut(s) 165, 236
FatI CATG 1 cut(s) 163
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 4 cut(s) 115, 222, 225, 289
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 4 cut(s) 115, 222, 225, 289
GlaI GCGC 2 cut(s) 113, 220
GluI GCNGC 4 cut(s) 115, 222, 225, 289
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 1 cut(s) 248
HapII CCGG 1 cut(s) 180
HhaI GCGC 2 cut(s) 114, 221
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 1 cut(s) 167
Hin6I GCGC 2 cut(s) 112, 219
HinP1I GCGC 2 cut(s) 112, 219
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 250
Hpy188III TCNNGA 1 cut(s) 68
Hpy99I CGWCG 3 cut(s) 83, 140, 269
HpyAV CCTTC 2 cut(s) 48, 164
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 294
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 1 cut(s) 167
HspAI GCGC 2 cut(s) 112, 219
KasI GGCGCC 1 cut(s) 218
Ksp22I TGATCA 1 cut(s) 64
KspI CCGCGG 1 cut(s) 225
Kzo9I GATC 2 cut(s) 18, 64
LpnPI CCDG 4 cut(s) 28, 55, 109, 193
LweI GCATC 1 cut(s) 42
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 173, 272
MalI GATC 2 cut(s) 20, 66
MboI GATC 2 cut(s) 18, 64
MboII GAAGA 5 cut(s) 16, 19, 68, 95, 135
Mly113I GGCGCC 1 cut(s) 219
MnlI CCTC 4 cut(s) 119, 122, 154, 211
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 43
MvaI CCWGG 1 cut(s) 43
MvnI CGCG 2 cut(s) 114, 224
MwoI GCNNNNNNNGC 2 cut(s) 30, 294
NarI GGCGCC 1 cut(s) 219
NdeII GATC 2 cut(s) 18, 64
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 1 cut(s) 220
NspI RCATGY 1 cut(s) 167
PfeI GAWTC 1 cut(s) 86
PfoI TCCNGGA 1 cut(s) 41
PinAI ACCGGT 1 cut(s) 179
PkrI GCNGC 4 cut(s) 116, 223, 226, 290
PluTI GGCGCC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 220
RsaI GTAC 3 cut(s) 184, 190, 244
RsaNI GTAC 3 cut(s) 183, 189, 243
SacII CCGCGG 1 cut(s) 225
SatI GCNGC 4 cut(s) 115, 222, 225, 289
Sau3AI GATC 2 cut(s) 18, 64
ScaI AGTACT 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 43
SetI ASST 3 cut(s) 101, 138, 175
SfaNI GCATC 1 cut(s) 42
SfoI GGCGCC 1 cut(s) 220
Sfr303I CCGCGG 1 cut(s) 225
SgrBI CCGCGG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
SsiI CCGC 5 cut(s) 114, 198, 222, 224, 288
SspDI GGCGCC 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 1 cut(s) 138
TatI WGTACW 1 cut(s) 188
TauI GCSGC 4 cut(s) 117, 224, 227, 291
TfiI GAWTC 1 cut(s) 86
TspDTI ATGAA 2 cut(s) 17, 174
XceI RCATGY 1 cut(s) 167
ZrmI AGTACT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.