Rroxscaffold_1G00014430

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017633
Physical Location & Seq
Forward (+)
17861234 .. 17861548
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014430.1

Sequence Viewer

Length: 315 bp
ATGAAGAGCAAGAAAACCATCTGCTTCTGCATCCCAGCCTGGAAACCCAAAGAAGAGAATGATCAAGAGAAGCCCGACGACGAATCCCATTCCAGCTCTCGTCGGCGGCGGAGCAAGAGAAAAGGAGAGCACGTCGTCTTAACGGCTCATAATAATGATCATGGTGAAGGCAACACAGGTACAAGTACTAACACTGCCTCAAGCACTGATGTTGGTGCCGCAGCTGTTGTTATGGTGAGTACTGCCAACATTTCTTCCATGGACGGCGGTGACGGTGGCAGCGCTCATGGTGGTGGCGGTGACGGCGGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

104

Amino Acids

10.71

Weight (kDa)

6.5

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37040 FvH4_5g15961
prunus_persica Prupe.6G068300_v2.0.a1
pyrus_communis pycom11g07830
rosa_chinensis RchiOBHm_Chr5g0066451
rosa_laevigata RLG00000035867
rosa_roxburghii Rroxscaffold_1G00014420 Rroxscaffold_1G00014430
rosa_samantha Rh5AG437400 Rh5BG453600 Rh5CG475900 Rh5DG468700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 215
AciI CCGC 6 cut(s) 106, 109, 219, 267, 297, 306
AfaI GTAC 3 cut(s) 181, 187, 241
AfeI AGCGCT 1 cut(s) 283
AjiI CACGTC 1 cut(s) 133
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 2 cut(s) 96, 224
AluI AGCT 2 cut(s) 96, 224
Alw21I GWGCWC 1 cut(s) 132
Aor51HI AGCGCT 1 cut(s) 283
ApeKI GCWGC 2 cut(s) 221, 279
AspLEI GCGC 1 cut(s) 284
AsuHPI GGTGA 4 cut(s) 176, 247, 281, 311
BanI GGYRCC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 233, 291
BccI CCATC 1 cut(s) 26
BceAI ACGGC 2 cut(s) 159, 280
BciT130I CCWGG 1 cut(s) 40
BclI TGATCA 2 cut(s) 61, 157
BfoI RGCGCY 1 cut(s) 285
BisI GCNGC 4 cut(s) 107, 219, 222, 280
BlsI GCNGC 4 cut(s) 108, 220, 223, 281
BmcAI AGTACT 2 cut(s) 187, 241
Bme1390I CCNGG 1 cut(s) 40
BmgBI CACGTC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 258
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 1 cut(s) 30
BseXI GCAGC 2 cut(s) 233, 291
BseYI CCCAGC 1 cut(s) 34
BshNI GGYRCC 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 2 cut(s) 61, 157
Bsp19I CCATGG 1 cut(s) 258
BspACI CCGC 6 cut(s) 106, 109, 219, 267, 297, 306
BspLI GGNNCC 1 cut(s) 217
BspT107I GGYRCC 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 2 cut(s) 61, 157
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 1 cut(s) 30
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 2 cut(s) 64, 160
BstMBI GATC 2 cut(s) 61, 157
BstMWI GCNNNNNNNGC 1 cut(s) 303
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 233, 291
BtgI CCRYGG 1 cut(s) 258
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 30
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 2 cut(s) 192, 204
CfoI GCGC 1 cut(s) 284
Csp6I GTAC 3 cut(s) 180, 186, 240
CviAII CATG 3 cut(s) 161, 259, 287
CviJI RGCY 6 cut(s) 38, 73, 96, 146, 224, 312
CviKI_1 RGCY 6 cut(s) 38, 73, 96, 146, 224, 312
CviQI GTAC 3 cut(s) 180, 186, 240
DpnI GATC 2 cut(s) 63, 159
DpnII GATC 2 cut(s) 61, 157
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 258
Eco47III AGCGCT 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 3 cut(s) 164, 262, 290
FaiI YATR 5 cut(s) 150, 162, 233, 260, 288
FatI CATG 3 cut(s) 160, 258, 286
FbaI TGATCA 2 cut(s) 61, 157
Fnu4HI GCNGC 4 cut(s) 107, 219, 222, 280
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 4 cut(s) 107, 219, 222, 280
GlaI GCGC 1 cut(s) 283
GluI GCNGC 4 cut(s) 107, 219, 222, 280
GsaI CCCAGC 1 cut(s) 38
HaeII RGCGCY 1 cut(s) 285
HhaI GCGC 1 cut(s) 284
Hin1II CATG 3 cut(s) 164, 262, 290
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HinfI GANTC 1 cut(s) 83
HphI GGTGA 4 cut(s) 176, 247, 281, 311
Hpy188III TCNNGA 1 cut(s) 65
Hpy99I CGWCG 4 cut(s) 80, 83, 105, 137
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 1 cut(s) 303
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 3 cut(s) 164, 262, 290
HspAI GCGC 1 cut(s) 282
Ksp22I TGATCA 2 cut(s) 61, 157
Kzo9I GATC 2 cut(s) 61, 157
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 5 cut(s) 25, 48, 52, 106, 162
Lsp1109I GCAGC 2 cut(s) 233, 291
LweI GCATC 1 cut(s) 39
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 2 cut(s) 269, 299
MalI GATC 2 cut(s) 63, 159
MboI GATC 2 cut(s) 61, 157
MboII GAAGA 3 cut(s) 16, 65, 246
MhlI GDGCHC 1 cut(s) 132
MnlI CCTC 1 cut(s) 208
MseI TTAA 1 cut(s) 140
MslI CAYNNNNRTG 2 cut(s) 153, 291
MspA1I CMGCKG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 40
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 303
NcoI CCATGG 1 cut(s) 258
NdeII GATC 2 cut(s) 61, 157
NlaIII CATG 3 cut(s) 164, 262, 290
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 2 cut(s) 269, 299
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 4 cut(s) 108, 220, 223, 281
Psp6I CCWGG 1 cut(s) 38
PspFI CCCAGC 1 cut(s) 34
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 217
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 3 cut(s) 181, 187, 241
RsaNI GTAC 3 cut(s) 180, 186, 240
RseI CAYNNNNRTG 2 cut(s) 153, 291
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 4 cut(s) 107, 219, 222, 280
Sau3AI GATC 2 cut(s) 61, 157
ScaI AGTACT 2 cut(s) 187, 241
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 1 cut(s) 132
SetI ASST 4 cut(s) 98, 135, 181, 226
SfaNI GCATC 1 cut(s) 39
SmiMI CAYNNNNRTG 2 cut(s) 153, 291
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
SsiI CCGC 6 cut(s) 106, 109, 219, 267, 297, 306
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 1 cut(s) 135
TatI WGTACW 2 cut(s) 185, 239
TauI GCSGC 2 cut(s) 109, 221
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TscAI CASTG 2 cut(s) 199, 211
TseFI GTSAC 2 cut(s) 269, 299
TseI GCWGC 2 cut(s) 221, 279
Tsp45I GTSAC 2 cut(s) 269, 299
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 199, 211
ZrmI AGTACT 2 cut(s) 187, 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.