Rh5AG437400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0017633
Physical Location & Seq
Reverse (-)
75147142 .. 75148800
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG437400.1

Sequence Viewer

Length: 336 bp
ATGCCTTCTGAATCCACATCCATCATCCCTTCAGTCATGAAGAGCAAGAAAACCATCTGCTTCTTCTGCATCCCTTCCTGGAAACACAACGAAGAGAATGATCAAGAGAAGCACGACCACGAATCCCATTCCAGCTCTCGTGGTCGGCGCGGCAACAGAAGAGGAGGAAACGTCGTCTCCACATCTCATAGTGATGATCATGCTGAAGGCAACACCGGTACAAGTACTACTACCGCCTCAAGCAATGATGTTGGCGCCGCGACCGTTGTCATGGTGAGTACGGCCAACTTTTCTTCCACTGACGGTGGTAACGCCGATGGTGGCGGCGATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.6

Weight (kDa)

5.79

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37040 FvH4_5g15961
prunus_persica Prupe.6G068300_v2.0.a1
pyrus_communis pycom11g07830
rosa_chinensis RchiOBHm_Chr5g0066451
rosa_laevigata RLG00000035867
rosa_roxburghii Rroxscaffold_1G00014420 Rroxscaffold_1G00014430
rosa_samantha Rh5AG437400 Rh5BG453600 Rh5CG475900 Rh5DG468700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 254
AccII CGCG 2 cut(s) 150, 260
AciI CCGC 4 cut(s) 150, 234, 258, 324
AcoI YGGCCR 1 cut(s) 282
AcuI CTGAAG 2 cut(s) 15, 225
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 3 cut(s) 220, 226, 280
AgeI ACCGGT 1 cut(s) 215
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 181
AoxI GGCC 1 cut(s) 282
AsiGI ACCGGT 1 cut(s) 215
AspLEI GCGC 2 cut(s) 150, 257
AsuHPI GGTGA 1 cut(s) 286
BanI GGYRCC 1 cut(s) 254
BauI CACGAG 1 cut(s) 138
BccI CCATC 4 cut(s) 29, 62, 311, 323
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 1 cut(s) 79
BclI TGATCA 2 cut(s) 100, 196
BcoDI GTCTC 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 258
BisI GCNGC 3 cut(s) 151, 258, 325
BlsI GCNGC 3 cut(s) 152, 259, 326
BmcAI AGTACT 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 79
BmsI GCATC 1 cut(s) 78
BoxI GACNNNNGTC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 223
BsaHI GRCGYC 1 cut(s) 255
BsaWI WCCGGW 1 cut(s) 215
BsaXI ACNNNNNCTCC 4 cut(s) 156, 161, 186, 191
Bse118I RCCGGY 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 250
BseBI CCWGG 1 cut(s) 79
BseGI GGATG 3 cut(s) 17, 24, 69
BseMI GCAATG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 177
Bsh1236I CGCG 2 cut(s) 150, 260
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 1 cut(s) 284
BshNI GGYRCC 1 cut(s) 254
BshTI ACCGGT 1 cut(s) 215
BsiEI CGRYCG 1 cut(s) 264
BsiSI CCGG 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 181
BsmBI CGTCTC 1 cut(s) 181
BsnI GGCC 1 cut(s) 284
Bsp143I GATC 2 cut(s) 100, 196
BspACI CCGC 4 cut(s) 150, 234, 258, 324
BspANI GGCC 1 cut(s) 284
BspFNI CGCG 2 cut(s) 150, 260
BspHI TCATGA 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 256
BspQI GCTCTTC 1 cut(s) 35
BspT107I GGYRCC 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 250
BsrFI RCCGGY 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 215
BssMI GATC 2 cut(s) 100, 196
BssNI GRCGYC 1 cut(s) 255
BssSI CACGAG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 2 cut(s) 265, 305
Bst6I CTCTTC 3 cut(s) 35, 87, 154
BstACI GRCGYC 1 cut(s) 255
BstF5I GGATG 3 cut(s) 17, 24, 69
BstFNI CGCG 2 cut(s) 150, 260
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 2 cut(s) 150, 257
BstKTI GATC 2 cut(s) 103, 199
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 2 cut(s) 100, 196
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 2 cut(s) 66, 330
BstNI CCWGG 1 cut(s) 79
BstPAI GACNNNNGTC 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 77
BstUI CGCG 2 cut(s) 150, 260
BsuRI GGCC 1 cut(s) 284
BtsCI GGATG 3 cut(s) 17, 24, 69
BtsIMutI CAGTG 1 cut(s) 297
CciI TCATGA 1 cut(s) 36
CfoI GCGC 2 cut(s) 150, 257
Cfr10I RCCGGY 1 cut(s) 215
Csp6I GTAC 3 cut(s) 219, 225, 279
CspAI ACCGGT 1 cut(s) 215
CviAII CATG 3 cut(s) 37, 200, 271
CviJI RGCY 3 cut(s) 135, 284, 333
CviKI_1 RGCY 3 cut(s) 135, 284, 333
CviQI GTAC 3 cut(s) 219, 225, 279
DinI GGCGCC 1 cut(s) 256
DpnI GATC 2 cut(s) 102, 198
DpnII GATC 2 cut(s) 100, 196
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 3 cut(s) 35, 87, 154
EarI CTCTTC 3 cut(s) 35, 87, 154
Eco57I CTGAAG 2 cut(s) 15, 225
EcoRII CCWGG 1 cut(s) 77
EgeI GGCGCC 1 cut(s) 256
EheI GGCGCC 1 cut(s) 256
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 3 cut(s) 40, 203, 274
FaiI YATR 4 cut(s) 38, 189, 201, 272
FatI CATG 3 cut(s) 36, 199, 270
FbaI TGATCA 2 cut(s) 100, 196
Fnu4HI GCNGC 3 cut(s) 151, 258, 325
FokI GGATG 3 cut(s) 4, 11, 56
Fsp4HI GCNGC 3 cut(s) 151, 258, 325
GlaI GCGC 2 cut(s) 149, 256
GluI GCNGC 3 cut(s) 151, 258, 325
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 1 cut(s) 284
HapII CCGG 1 cut(s) 216
HhaI GCGC 2 cut(s) 150, 257
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 3 cut(s) 40, 203, 274
Hin6I GCGC 2 cut(s) 148, 255
HinP1I GCGC 2 cut(s) 148, 255
HinfI GANTC 2 cut(s) 11, 122
HpaII CCGG 1 cut(s) 216
HphI GGTGA 1 cut(s) 286
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 2 cut(s) 37, 104
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 4 cut(s) 15, 39, 84, 200
HpyCH4III ACNGT 2 cut(s) 265, 305
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 330
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 3 cut(s) 40, 203, 274
HspAI GCGC 2 cut(s) 148, 255
KasI GGCGCC 1 cut(s) 254
Ksp22I TGATCA 2 cut(s) 100, 196
Kzo9I GATC 2 cut(s) 100, 196
LguI GCTCTTC 1 cut(s) 35
LpnPI CCDG 4 cut(s) 64, 91, 145, 229
LweI GCATC 1 cut(s) 78
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 308
MalI GATC 2 cut(s) 102, 198
MboI GATC 2 cut(s) 100, 196
MboII GAAGA 5 cut(s) 52, 55, 104, 171, 285
Mly113I GGCGCC 1 cut(s) 255
MnlI CCTC 3 cut(s) 155, 158, 247
MslI CAYNNNNRTG 1 cut(s) 192
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 79
MvaI CCWGG 1 cut(s) 79
MvnI CGCG 2 cut(s) 150, 260
MwoI GCNNNNNNNGC 2 cut(s) 66, 330
NarI GGCGCC 1 cut(s) 255
NdeII GATC 2 cut(s) 100, 196
NlaIII CATG 3 cut(s) 40, 203, 274
NlaIV GGNNCC 1 cut(s) 256
PagI TCATGA 1 cut(s) 36
PciSI GCTCTTC 1 cut(s) 35
PfeI GAWTC 2 cut(s) 11, 122
PfoI TCCNGGA 1 cut(s) 77
PinAI ACCGGT 1 cut(s) 215
PkrI GCNGC 3 cut(s) 152, 259, 326
PluTI GGCGCC 1 cut(s) 258
PshAI GACNNNNGTC 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 256
RsaI GTAC 3 cut(s) 220, 226, 280
RsaNI GTAC 3 cut(s) 219, 225, 279
RseI CAYNNNNRTG 1 cut(s) 192
SapI GCTCTTC 1 cut(s) 35
SatI GCNGC 3 cut(s) 151, 258, 325
Sau3AI GATC 2 cut(s) 100, 196
ScaI AGTACT 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 79
SetI ASST 2 cut(s) 137, 174
SfaNI GCATC 1 cut(s) 78
SfoI GGCGCC 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
SsiI CCGC 4 cut(s) 150, 234, 258, 324
SspDI GGCGCC 1 cut(s) 254
StyD4I CCNGG 1 cut(s) 77
TaaI ACNGT 2 cut(s) 265, 305
TaiI ACGT 1 cut(s) 174
TatI WGTACW 1 cut(s) 224
TauI GCSGC 3 cut(s) 153, 260, 327
TfiI GAWTC 2 cut(s) 11, 122
TscAI CASTG 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 53
TspRI CASTG 1 cut(s) 304
ZrmI AGTACT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.