Rh5CG475900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017633
Physical Location & Seq
Reverse (-)
66429239 .. 66430506
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG475900.1

Sequence Viewer

Length: 336 bp
ATGAAGAGCAAGAAAACCATCTGCTTCTTCTGCATCCCTTCCTGGAAACACAACGAAGAGAATGATCAAGAGAAGCACGACCACGAATCCCATTCCAGCTCTCATGGTCGGCGTGGCAAGAGAAGAGGAGGAAACGTCGTCTCCACATCTCATAGTGATGATCATGCTGAAGGCAACACCGGTACAAGTACTACTACCGCCTCAAGCAATGATGTTGGCGCCGCGGCCGTTGTTATGGTCGTATACAGAGTCAGCGACACCTCGATCGTGCTTCCGTTCTATGTGTCCCTGGCTTTGTGTTTGGAGAGAACCCGCTCCCTCTGTGCTTCAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.07

Weight (kDa)

7.76

Isoelectric Point (pI)

38.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37040 FvH4_5g15961
prunus_persica Prupe.6G068300_v2.0.a1
pyrus_communis pycom11g07830
rosa_chinensis RchiOBHm_Chr5g0066451
rosa_laevigata RLG00000035867
rosa_roxburghii Rroxscaffold_1G00014420 Rroxscaffold_1G00014430
rosa_samantha Rh5AG437400 Rh5BG453600 Rh5CG475900 Rh5DG468700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 218
AccBSI CCGCTC 1 cut(s) 315
AccI GTMKAC 1 cut(s) 243
AccII CGCG 1 cut(s) 224
AciI CCGC 4 cut(s) 198, 222, 224, 313
AcoI YGGCCR 1 cut(s) 225
AcuI CTGAAG 2 cut(s) 189, 312
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 2 cut(s) 184, 190
AgeI ACCGGT 1 cut(s) 179
AjnI CCWGG 2 cut(s) 41, 288
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 145
AoxI GGCC 1 cut(s) 225
AsiGI ACCGGT 1 cut(s) 179
AspLEI GCGC 1 cut(s) 221
BanI GGYRCC 1 cut(s) 218
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 2 cut(s) 43, 290
BclI TGATCA 2 cut(s) 64, 160
BcoDI GTCTC 1 cut(s) 145
BfoI RGCGCY 1 cut(s) 222
BisI GCNGC 2 cut(s) 222, 225
BlsI GCNGC 2 cut(s) 223, 226
BmcAI AGTACT 1 cut(s) 190
Bme1390I CCNGG 2 cut(s) 43, 290
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 2 cut(s) 43, 290
BmsI GCATC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 222, 288
BsaWI WCCGGW 1 cut(s) 179
BsaXI ACNNNNNCTCC 4 cut(s) 120, 125, 150, 155
Bse118I RCCGGY 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 2 cut(s) 43, 290
BseDI CCNNGG 2 cut(s) 222, 288
BseGI GGATG 1 cut(s) 33
BseMI GCAATG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 141
BseX3I CGGCCG 1 cut(s) 225
Bsh1236I CGCG 1 cut(s) 224
Bsh1285I CGRYCG 2 cut(s) 228, 267
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 218
BshTI ACCGGT 1 cut(s) 179
BsiEI CGRYCG 2 cut(s) 228, 267
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 271
BsmAI GTCTC 1 cut(s) 145
BsmBI CGTCTC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 271
BsnI GGCC 1 cut(s) 227
Bsp143I GATC 3 cut(s) 64, 160, 264
BspACI CCGC 4 cut(s) 198, 222, 224, 313
BspANI GGCC 1 cut(s) 227
BspFNI CGCG 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 220
BspT107I GGYRCC 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 315
BsrDI GCAATG 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 2 cut(s) 222, 288
BssMI GATC 3 cut(s) 64, 160, 264
BssNAI GTATAC 1 cut(s) 244
BssNI GRCGYC 1 cut(s) 219
Bst1107I GTATAC 1 cut(s) 244
Bst2UI CCWGG 2 cut(s) 43, 290
Bst6I CTCTTC 2 cut(s) 51, 118
BstACI GRCGYC 1 cut(s) 219
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 1 cut(s) 224
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 3 cut(s) 67, 163, 267
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 3 cut(s) 64, 160, 264
BstMCI CGRYCG 2 cut(s) 228, 267
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstNI CCWGG 2 cut(s) 43, 290
BstSCI CCNGG 2 cut(s) 41, 288
BstUI CGCG 1 cut(s) 224
BstZ17I GTATAC 1 cut(s) 244
BstZI CGGCCG 1 cut(s) 225
BsuRI GGCC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 33
CfoI GCGC 1 cut(s) 221
Cfr10I RCCGGY 1 cut(s) 179
Cfr42I CCGCGG 1 cut(s) 225
Csp6I GTAC 2 cut(s) 183, 189
CspAI ACCGGT 1 cut(s) 179
CviAII CATG 2 cut(s) 104, 164
CviJI RGCY 3 cut(s) 99, 227, 293
CviKI_1 RGCY 3 cut(s) 99, 227, 293
CviQI GTAC 2 cut(s) 183, 189
DinI GGCGCC 1 cut(s) 220
DpnI GATC 3 cut(s) 66, 162, 266
DpnII GATC 3 cut(s) 64, 160, 264
EaeI YGGCCR 1 cut(s) 225
EagI CGGCCG 1 cut(s) 225
Eam1104I CTCTTC 2 cut(s) 51, 118
EarI CTCTTC 2 cut(s) 51, 118
EclXI CGGCCG 1 cut(s) 225
Eco52I CGGCCG 1 cut(s) 225
Eco57I CTGAAG 2 cut(s) 189, 312
EcoRII CCWGG 2 cut(s) 41, 288
EgeI GGCGCC 1 cut(s) 220
EheI GGCGCC 1 cut(s) 220
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 2 cut(s) 107, 167
FaiI YATR 6 cut(s) 105, 153, 165, 236, 244, 282
FaqI GGGAC 1 cut(s) 271
FatI CATG 2 cut(s) 103, 163
FauI CCCGC 1 cut(s) 320
FbaI TGATCA 2 cut(s) 64, 160
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 222, 225
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 222, 225
GlaI GCGC 1 cut(s) 220
GluI GCNGC 2 cut(s) 222, 225
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 1 cut(s) 227
HapII CCGG 1 cut(s) 180
HhaI GCGC 1 cut(s) 221
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 2 cut(s) 107, 167
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HinfI GANTC 2 cut(s) 86, 249
HpaII CCGG 1 cut(s) 180
Hpy166II GTNNAC 1 cut(s) 244
Hpy188III TCNNGA 2 cut(s) 68, 330
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 2 cut(s) 48, 164
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 2 cut(s) 107, 167
HspAI GCGC 1 cut(s) 219
KasI GGCGCC 1 cut(s) 218
Ksp22I TGATCA 2 cut(s) 64, 160
KspI CCGCGG 1 cut(s) 225
Kzo9I GATC 3 cut(s) 64, 160, 264
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 7 cut(s) 28, 55, 109, 193, 275, 302, 315
LweI GCATC 1 cut(s) 42
MaeII ACGT 1 cut(s) 135
MalI GATC 3 cut(s) 66, 162, 266
MbiI CCGCTC 1 cut(s) 315
MboI GATC 3 cut(s) 64, 160, 264
MboII GAAGA 4 cut(s) 16, 19, 68, 135
Mly113I GGCGCC 1 cut(s) 219
MlyI GAGTC 1 cut(s) 258
MnlI CCTC 5 cut(s) 119, 122, 211, 271, 329
MslI CAYNNNNRTG 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 43, 290
MvaI CCWGG 2 cut(s) 43, 290
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 30
NarI GGCGCC 1 cut(s) 219
NdeII GATC 3 cut(s) 64, 160, 264
NlaIII CATG 2 cut(s) 107, 167
NlaIV GGNNCC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 86
PfoI TCCNGGA 1 cut(s) 41
PinAI ACCGGT 1 cut(s) 179
PkrI GCNGC 2 cut(s) 223, 226
Ple19I CGATCG 1 cut(s) 267
PleI GAGTC 1 cut(s) 257
PluTI GGCGCC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 257
Psp6I CCWGG 2 cut(s) 41, 288
PspGI CCWGG 2 cut(s) 41, 288
PspN4I GGNNCC 1 cut(s) 220
PvuI CGATCG 1 cut(s) 267
RsaI GTAC 2 cut(s) 184, 190
RsaNI GTAC 2 cut(s) 183, 189
RseI CAYNNNNRTG 1 cut(s) 156
SacII CCGCGG 1 cut(s) 225
SatI GCNGC 2 cut(s) 222, 225
Sau3AI GATC 3 cut(s) 64, 160, 264
ScaI AGTACT 1 cut(s) 190
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 2 cut(s) 43, 290
SetI ASST 3 cut(s) 101, 138, 263
SfaNI GCATC 1 cut(s) 42
SfoI GGCGCC 1 cut(s) 220
Sfr303I CCGCGG 1 cut(s) 225
SgrBI CCGCGG 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
SsiI CCGC 4 cut(s) 198, 222, 224, 313
SspDI GGCGCC 1 cut(s) 218
StyD4I CCNGG 2 cut(s) 41, 288
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 263
TatI WGTACW 1 cut(s) 188
TauI GCSGC 2 cut(s) 224, 227
TfiI GAWTC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 264
XmiI GTMKAC 1 cut(s) 243
ZrmI AGTACT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.