FvH4_3g37420

Glutathione S-transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015584
Physical Location & Seq
Forward (+)
32122379 .. 32123608
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37420.t1

Sequence Viewer

Length: 663 bp
ATGTCGAAGGCAGAGGTTACTCTTTTGGACTGTTGGGTTAGCCCTTTCTGCATGAGGGTGAAAATTGCTTTGGAAGAAAAGGGTGTTGCATACGAAAGCCAGGCTGAGGATTTGTTTGGAGGCAAGAGTGAACTTCTACTTACATCAAACCCTCATGGCAAGGTGCCTGTGTTGCTCCACAATGAGAAACCTGTGTCCGAGTCCGCCATCATAGTGGCCTACATTGATGAAACCTGGACAGCTTCCTCATTTCTCCCACCTTGCGCTTACGGCCGAGCTCAGGCAAGGTTTTGGGCGGACTACATTGACAAAAAGGTGTTTGATGCAGGCAAAGGCATCTGTTTGGGCAAAGGAGAAGAAGTAGAGGTCGCTAAGAAGGACTTCATTGAGGTTATAAAGACTCTAGAGAAGACTTTGGGGGATAAGGATTTCTTCGGAGGCGATACCTTTGGTTTCGTCGACATCATAGGCATTGCCATGACGAGTTGGTTCCCTGCATATGAGAAATACGGTAGCTTCAAGCTTGAAGATGACTGCCCCAAATTCTCAGCTTGGATCAAGAGGAGCTCGGAGAGGGAGAGTGTAGCCAAGGTCATTCCAGAGGCCGAGAAGGTCCTCGGATTTATGGCCATGTTTAGGAAGATGATGGGAGTAGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418
Pfam Domains
Protein Families
GST_C GST_C_2 GST_N

Protein Analysis

221

Amino Acids

24.59

Weight (kDa)

5.11

Isoelectric Point (pI)

33.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 5 - 77 2.6e-16 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 10 - 78 6.5e-15 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 14 - 78 2.8e-13 Glutathione S-transferase, N-terminal domain
GST_C PF00043 119 - 193 6.9e-08 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 121 - 188 8.8e-08 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015584)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37420
malus_domestica MD09G1279700.v1.1 MD17G1271700.v1.1 MD17G1286500.v1.1
prunus_persica Prupe.3G014500_v2.0.a1
pyrus_communis pycom17g26990
rosa_chinensis RchiOBHm_Chr5g0067311
rosa_laevigata RLG00000035926
rosa_multiflora Rmu_sc0000015.1_g000002
rosa_roxburghii Rroxscaffold_1G00013760
rosa_rugosa Rorug05G0384100
rosa_samantha Rh5AG443500 Rh5BG460500 Rh5CG482800 Rh5DG475600
rosa_wichuraiana Rw5G041420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 163
AccI GTMKAC 1 cut(s) 459
AciI CCGC 2 cut(s) 204, 296
AclWI GGATC 1 cut(s) 563
AcoI YGGCCR 2 cut(s) 271, 627
AcsI RAATTY 1 cut(s) 542
AfiI CCNNNNNNNGG 3 cut(s) 106, 280, 636
AgsI TTSAA 2 cut(s) 520, 527
AjnI CCWGG 2 cut(s) 99, 233
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 6 cut(s) 242, 278, 516, 523, 551, 567
AluI AGCT 6 cut(s) 242, 278, 516, 523, 551, 567
Alw21I GWGCWC 2 cut(s) 280, 569
AlwI GGATC 1 cut(s) 563
AoxI GGCC 4 cut(s) 216, 271, 603, 627
ApoI RAATTY 1 cut(s) 542
Asp700I GAANNNNTTC 1 cut(s) 380
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 613
AsuHPI GGTGA 1 cut(s) 70
AvaII GGWCC 1 cut(s) 613
BalI TGGCCA 1 cut(s) 629
BanI GGYRCC 1 cut(s) 163
BanII GRGCYC 2 cut(s) 280, 569
BbsI GAAGAC 1 cut(s) 416
Bbv12I GWGCWC 2 cut(s) 280, 569
BbvCI CCTCAGC 1 cut(s) 105
BccI CCATC 2 cut(s) 215, 640
BceAI ACGGC 1 cut(s) 286
BciT130I CCWGG 2 cut(s) 101, 235
BfaI CTAG 1 cut(s) 404
Bme1390I CCNGG 2 cut(s) 101, 235
Bme18I GGWCC 1 cut(s) 613
BmgT120I GGNCC 1 cut(s) 613
BmiI GGNNCC 2 cut(s) 165, 491
BmrFI CCNGG 2 cut(s) 101, 235
BmsI GCATC 2 cut(s) 313, 345
BpiI GAAGAC 1 cut(s) 416
Bpu10I CCTNAGC 2 cut(s) 105, 279
BsaJI CCNNGG 2 cut(s) 588, 616
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 280, 636
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 2 cut(s) 101, 235
BseDI CCNNGG 2 cut(s) 588, 616
BseLI CCNNNNNNNGG 3 cut(s) 106, 280, 636
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 3 cut(s) 96, 293, 561
BseRI GAGGAG 1 cut(s) 577
BseX3I CGGCCG 1 cut(s) 271
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 4 cut(s) 218, 273, 605, 629
BshNI GGYRCC 1 cut(s) 163
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 2 cut(s) 280, 569
BslI CCNNNNNNNGG 3 cut(s) 106, 280, 636
BsnI GGCC 4 cut(s) 218, 273, 605, 629
Bsp1286I GDGCHC 2 cut(s) 280, 569
Bsp143I GATC 1 cut(s) 555
BspACI CCGC 2 cut(s) 204, 296
BspANI GGCC 4 cut(s) 218, 273, 605, 629
BspCNI CTCAG 3 cut(s) 97, 292, 560
BspLI GGNNCC 2 cut(s) 165, 491
BspPI GGATC 1 cut(s) 563
BspT107I GGYRCC 1 cut(s) 163
BsrDI GCAATG 1 cut(s) 471
BssECI CCNNGG 2 cut(s) 588, 616
BssMI GATC 1 cut(s) 555
BssT1I CCWWGG 1 cut(s) 588
Bst2UI CCWGG 2 cut(s) 101, 235
Bst4CI ACNGT 2 cut(s) 32, 512
Bst6I CTCTTC 1 cut(s) 651
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 4 cut(s) 105, 279, 372, 547
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 1 cut(s) 558
BstMBI GATC 1 cut(s) 555
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 3 cut(s) 48, 172, 270
BstNI CCWGG 2 cut(s) 101, 235
BstSCI CCNGG 2 cut(s) 99, 233
BstV2I GAAGAC 1 cut(s) 416
BstXI CCANNNNNNTGG 1 cut(s) 214
BstZI CGGCCG 1 cut(s) 271
BsuRI GGCC 4 cut(s) 218, 273, 605, 629
Cac8I GCNNGC 1 cut(s) 328
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 613
CviAII CATG 4 cut(s) 52, 155, 478, 631
DdeI CTNAG 4 cut(s) 105, 279, 372, 547
DpnI GATC 1 cut(s) 557
DpnII GATC 1 cut(s) 555
EaeI YGGCCR 2 cut(s) 271, 627
EagI CGGCCG 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 651
EarI CTCTTC 1 cut(s) 651
EciI GGCGGA 2 cut(s) 193, 311
Ecl136II GAGCTC 2 cut(s) 278, 567
EclXI CGGCCG 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 588
Eco24I GRGCYC 2 cut(s) 280, 569
Eco47I GGWCC 1 cut(s) 613
Eco52I CGGCCG 1 cut(s) 271
Eco53kI GAGCTC 2 cut(s) 278, 567
EcoICRI GAGCTC 2 cut(s) 278, 567
EcoO109I RGGNCCY 1 cut(s) 613
EcoRII CCWGG 2 cut(s) 99, 233
EcoT14I CCWWGG 1 cut(s) 588
EcoT38I GRGCYC 2 cut(s) 280, 569
ErhI CCWWGG 1 cut(s) 588
FaeI CATG 4 cut(s) 55, 158, 481, 634
FalI AAGNNNNNCTT 4 cut(s) 365, 397, 416, 448
FatI CATG 4 cut(s) 51, 154, 477, 630
FauNDI CATATG 1 cut(s) 499
FblI GTMKAC 1 cut(s) 459
FriOI GRGCYC 2 cut(s) 280, 569
FspBI CTAG 1 cut(s) 404
GlaI GCGC 1 cut(s) 265
HaeIII GGCC 4 cut(s) 218, 273, 605, 629
HhaI GCGC 1 cut(s) 266
Hin1II CATG 4 cut(s) 55, 158, 481, 634
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 2 cut(s) 200, 400
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 131, 460
Hpy188I TCNGA 4 cut(s) 199, 437, 571, 620
Hpy188III TCNNGA 3 cut(s) 404, 559, 599
Hpy8I GTNNAC 2 cut(s) 131, 460
Hpy99I CGWCG 1 cut(s) 461
HpyAV CCTTC 2 cut(s) 370, 604
HpyCH4III ACNGT 2 cut(s) 32, 512
HpyCH4V TGCA 4 cut(s) 51, 89, 326, 497
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 172, 270
HpyF3I CTNAG 4 cut(s) 105, 279, 372, 547
Hsp92II CATG 4 cut(s) 55, 158, 481, 634
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 1 cut(s) 555
LmnI GCTCC 2 cut(s) 180, 564
LweI GCATC 2 cut(s) 313, 345
MaeI CTAG 1 cut(s) 404
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 557
MboI GATC 1 cut(s) 555
MboII GAAGA 6 cut(s) 86, 368, 421, 424, 539, 652
MhlI GDGCHC 2 cut(s) 280, 569
MlsI TGGCCA 1 cut(s) 629
MluCI AATT 2 cut(s) 63, 542
MluNI TGGCCA 1 cut(s) 629
MlyI GAGTC 2 cut(s) 209, 394
Mox20I TGGCCA 1 cut(s) 629
MroXI GAANNNNTTC 1 cut(s) 380
MscI TGGCCA 1 cut(s) 629
MslI CAYNNNNRTG 3 cut(s) 56, 212, 476
Msp20I TGGCCA 1 cut(s) 629
MspR9I CCNGG 2 cut(s) 101, 235
MvaI CCWGG 2 cut(s) 101, 235
MwoI GCNNNNNNNGC 3 cut(s) 48, 172, 270
NdeI CATATG 1 cut(s) 499
NdeII GATC 1 cut(s) 555
NlaIII CATG 4 cut(s) 55, 158, 481, 634
NlaIV GGNNCC 2 cut(s) 165, 491
NmeAIII GCCGAG 2 cut(s) 299, 631
PdmI GAANNNNTTC 1 cut(s) 380
PleI GAGTC 2 cut(s) 208, 394
PpsI GAGTC 2 cut(s) 208, 394
PpuMI RGGWCCY 1 cut(s) 613
PsiI TTATAA 1 cut(s) 395
Psp124BI GAGCTC 2 cut(s) 280, 569
Psp5II RGGWCCY 1 cut(s) 613
Psp6I CCWGG 2 cut(s) 99, 233
PspGI CCWGG 2 cut(s) 99, 233
PspN4I GGNNCC 2 cut(s) 165, 491
PspPI GGNCC 1 cut(s) 613
PspPPI RGGWCCY 1 cut(s) 613
RseI CAYNNNNRTG 3 cut(s) 56, 212, 476
SacI GAGCTC 2 cut(s) 280, 569
SalI GTCGAC 1 cut(s) 458
Sau3AI GATC 1 cut(s) 555
Sau96I GGNCC 1 cut(s) 613
SchI GAGTC 2 cut(s) 209, 394
ScrFI CCNGG 2 cut(s) 101, 235
SduI GDGCHC 2 cut(s) 280, 569
SfaNI GCATC 2 cut(s) 313, 345
SinI GGWCC 1 cut(s) 613
SmiMI CAYNNNNRTG 3 cut(s) 56, 212, 476
Sse9I AATT 2 cut(s) 63, 542
SsiI CCGC 2 cut(s) 204, 296
SspMI CTAG 1 cut(s) 404
SstI GAGCTC 2 cut(s) 280, 569
StyD4I CCNGG 2 cut(s) 99, 233
StyI CCWWGG 1 cut(s) 588
TaaI ACNGT 2 cut(s) 32, 512
TaqI TCGA 2 cut(s) 5, 459
TasI AATT 2 cut(s) 63, 542
TspDTI ATGAA 2 cut(s) 243, 373
VpaK11BI GGWCC 1 cut(s) 613
XapI RAATTY 1 cut(s) 542
XbaI TCTAGA 1 cut(s) 403
XmiI GTMKAC 1 cut(s) 459
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.