Rorug05G0384100

Glutathione S-transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015584
Physical Location & Seq
Reverse (-)
52134918 .. 52138300
3383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0384100.1

Sequence Viewer

Length: 990 bp
ATGGCGGGAATAGCTATAGTCTTAGATCTGCTGAGAAAAAACCCAAGTCTTACAACCCAAAGCCTTCACGCTTCTGGGTTCTTCTCGGCGAAAGCAGCTGCTTCCGCCGCCGCCGCCGCCGCCGGAGCTCCTTACGTTTACAAGTCCTTGTTCAGTAATTTTAGGGGACCAGTTGCCTATTGTGATGCTGGAGCAACATTGTCGGAAGATTACATCTCTAATTTACGAAGTGCATCCTTAAAAATATTTCAGAATGAATCTGTGAATTACGGTACCAAGGAATACACAATCGAGTTAAAGCCACTATTCTCAGCTTTCGAATTGAGAGCTCTAACTTTGACGACTCTGAGGTCATTTTTACTGTACTTTTTACCTCTTCTGGAGCCTCGTGCAAACTTGGAAGAGGACGATGATGACTTCCTGCAGGACACTGAAGAAGAACAACGTATAGATTATGTTGTTCCATTAAAAAAATCATTAAAGCAGATTGCTCGTGAGACTACTGTCACAACCACTAGACGGATTCTAGAAAGAATTTCTGTTTATTATGTGTCACAGAGAATGGCATGGAAACTTCTGAAAGATCTCCCAAAGTCTGCCATGAGGAAAGCTGGAAGAAGAATGCCAACTTATGTTTTCTTCTTCAATGTTGGCAAAACGACTATGAGAGGACACTTTCTAGGTGTTGCAGCATCTTGGATCATCTCAGTTGGCATTGATATCTACCGAACTTTTAAAGGAATGATAAACTCTAAAGAAGAGGTTGATGAAATCGATACACCACAAAAGCTTAAACTTCTTGGGAATAAGGTTTGGGGCACTACTATCAGGTGTGGTGCATCACTGATTTTTGCTTCAATTGGGGCGGGTATTGGTGCCACTCTTTTTCGCCCTTCAACTGGCCAGTGGGTTGGTTGTGTTCTGGGAGATGTGGCAGGGCCTATTATTGTCTCATATTGCCTTGAGAGATCTTTCCATATAGAACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418
Pfam Domains
Protein Families
GST_C GST_C_2 GST_N

Protein Analysis

329

Amino Acids

36.53

Weight (kDa)

9.12

Isoelectric Point (pI)

32.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015584)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37420
malus_domestica MD09G1279700.v1.1 MD17G1271700.v1.1 MD17G1286500.v1.1
prunus_persica Prupe.3G014500_v2.0.a1
pyrus_communis pycom17g26990
rosa_chinensis RchiOBHm_Chr5g0067311
rosa_laevigata RLG00000035926
rosa_multiflora Rmu_sc0000015.1_g000002
rosa_roxburghii Rroxscaffold_1G00013760
rosa_rugosa Rorug05G0384100
rosa_samantha Rh5AG443500 Rh5BG460500 Rh5CG482800 Rh5DG475600
rosa_wichuraiana Rw5G041420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 349
Acc65I GGTACC 1 cut(s) 272
AccB1I GGYRCC 2 cut(s) 272, 875
AciI CCGC 8 cut(s) 5, 105, 108, 111, 114, 117, 120, 866
AclWI GGATC 1 cut(s) 707
AcoI YGGCCR 1 cut(s) 901
AcsI RAATTY 1 cut(s) 534
AcuI CTGAAG 1 cut(s) 453
AfaI GTAC 2 cut(s) 274, 365
AfiI CCNNNNNNNGG 2 cut(s) 519, 899
AgsI TTSAA 3 cut(s) 646, 858, 897
AluBI AGCT 7 cut(s) 14, 98, 128, 314, 329, 611, 790
AluI AGCT 7 cut(s) 14, 98, 128, 314, 329, 611, 790
Alw21I GWGCWC 2 cut(s) 130, 331
Alw26I GTCTC 2 cut(s) 491, 955
AlwI GGATC 1 cut(s) 707
AoxI GGCC 2 cut(s) 901, 938
ApeKI GCWGC 3 cut(s) 95, 98, 689
ApoI RAATTY 1 cut(s) 534
Asp718I GGTACC 1 cut(s) 272
AspS9I GGNCC 2 cut(s) 167, 938
AsuII TTCGAA 1 cut(s) 318
AvaII GGWCC 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 821
BalI TGGCCA 1 cut(s) 903
BanI GGYRCC 2 cut(s) 272, 875
BanII GRGCYC 2 cut(s) 130, 331
BauI CACGAG 2 cut(s) 387, 492
Bbv12I GWGCWC 2 cut(s) 130, 331
BbvI GCAGC 3 cut(s) 85, 107, 701
BcgI CGANNNNNNTGC 4 cut(s) 183, 217, 473, 507
BcoDI GTCTC 2 cut(s) 491, 955
BfaI CTAG 3 cut(s) 516, 527, 680
BfmI CTRYAG 2 cut(s) 15, 422
BglII AGATCT 3 cut(s) 25, 583, 968
BisI GCNGC 8 cut(s) 96, 99, 108, 111, 114, 117, 120, 690
BlsI GCNGC 8 cut(s) 97, 100, 109, 112, 115, 118, 121, 691
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 167, 938
BmiI GGNNCC 4 cut(s) 168, 274, 384, 877
BmsI GCATC 4 cut(s) 175, 242, 701, 848
BoxI GACNNNNGTC 1 cut(s) 503
BpmI CTGGAG 2 cut(s) 210, 401
Bpu14I TTCGAA 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 983
Bsa29I ATCGAT 1 cut(s) 774
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 2 cut(s) 519, 899
Bse1I ACTGG 3 cut(s) 170, 904, 904
BseCI ATCGAT 1 cut(s) 774
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 233
BseLI CCNNNNNNNGG 2 cut(s) 519, 899
BseMII CTCAG 4 cut(s) 23, 324, 338, 720
BseNI ACTGG 3 cut(s) 170, 904, 904
BseSI GKGCMC 1 cut(s) 821
BseXI GCAGC 3 cut(s) 85, 107, 701
BshFI GGCC 2 cut(s) 903, 940
BshNI GGYRCC 2 cut(s) 272, 875
BshVI ATCGAT 1 cut(s) 774
BsiHKAI GWGCWC 2 cut(s) 130, 331
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 2 cut(s) 519, 899
BsmAI GTCTC 2 cut(s) 491, 955
BsmFI GGGAC 1 cut(s) 180
BsmI GAATGC 1 cut(s) 627
BsnI GGCC 2 cut(s) 903, 940
Bsp119I TTCGAA 1 cut(s) 318
Bsp1286I GDGCHC 3 cut(s) 130, 331, 821
Bsp143I GATC 4 cut(s) 25, 583, 699, 968
BspACI CCGC 8 cut(s) 5, 105, 108, 111, 114, 117, 120, 866
BspANI GGCC 2 cut(s) 903, 940
BspCNI CTCAG 4 cut(s) 24, 323, 339, 719
BspDI ATCGAT 1 cut(s) 774
BspLI GGNNCC 4 cut(s) 168, 274, 384, 877
BspMAI CTGCAG 1 cut(s) 426
BspPI GGATC 1 cut(s) 707
BspT104I TTCGAA 1 cut(s) 318
BspT107I GGYRCC 2 cut(s) 272, 875
BsrI ACTGG 3 cut(s) 170, 904, 904
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 4 cut(s) 25, 583, 699, 968
BssSI CACGAG 2 cut(s) 387, 492
BssT1I CCWWGG 1 cut(s) 276
Bst2BI CACGAG 2 cut(s) 387, 492
Bst4CI ACNGT 3 cut(s) 272, 363, 505
Bst6I CTCTTC 3 cut(s) 381, 396, 753
BstBI TTCGAA 1 cut(s) 318
BstDEI CTNAG 5 cut(s) 22, 32, 310, 347, 706
BstF5I GGATG 1 cut(s) 233
BstKTI GATC 4 cut(s) 28, 586, 702, 971
BstMAI GTCTC 2 cut(s) 491, 955
BstMBI GATC 4 cut(s) 25, 583, 699, 968
BstMWI GCNNNNNNNGC 8 cut(s) 11, 95, 104, 107, 113, 116, 119, 125
BstPAI GACNNNNGTC 1 cut(s) 503
BstSFI CTRYAG 2 cut(s) 15, 422
BstSLI GKGCMC 1 cut(s) 821
BstV1I GCAGC 3 cut(s) 85, 107, 701
BstX2I RGATCY 3 cut(s) 25, 583, 968
BstXI CCANNNNNNTGG 1 cut(s) 911
BstYI RGATCY 3 cut(s) 25, 583, 968
Bsu15I ATCGAT 1 cut(s) 774
BsuRI GGCC 2 cut(s) 903, 940
BsuTUI ATCGAT 1 cut(s) 774
BtsCI GGATG 1 cut(s) 233
BtsIMutI CAGTG 3 cut(s) 429, 842, 911
Cfr13I GGNCC 2 cut(s) 167, 938
ClaI ATCGAT 1 cut(s) 774
Csp6I GTAC 2 cut(s) 273, 364
CviAII CATG 2 cut(s) 567, 601
CviQI GTAC 2 cut(s) 273, 364
DdeI CTNAG 5 cut(s) 22, 32, 310, 347, 706
DpnI GATC 4 cut(s) 27, 585, 701, 970
DpnII GATC 4 cut(s) 25, 583, 699, 968
DraI TTTAAA 1 cut(s) 736
DrdI GACNNNNNNGTC 1 cut(s) 349
DseDI GACNNNNNNGTC 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 901
Eam1104I CTCTTC 3 cut(s) 381, 396, 753
EarI CTCTTC 3 cut(s) 381, 396, 753
EciI GGCGGA 1 cut(s) 94
Ecl136II GAGCTC 2 cut(s) 128, 329
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 2 cut(s) 130, 331
Eco32I GATATC 1 cut(s) 721
Eco47I GGWCC 1 cut(s) 167
Eco53kI GAGCTC 2 cut(s) 128, 329
Eco57I CTGAAG 1 cut(s) 453
EcoICRI GAGCTC 2 cut(s) 128, 329
EcoO109I RGGNCCY 1 cut(s) 938
EcoRV GATATC 1 cut(s) 721
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 2 cut(s) 130, 331
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 2 cut(s) 570, 604
FaqI GGGAC 1 cut(s) 180
FatI CATG 2 cut(s) 566, 600
FauI CCCGC 1 cut(s) 859
Fnu4HI GCNGC 8 cut(s) 96, 99, 108, 111, 114, 117, 120, 690
FokI GGATG 1 cut(s) 220
FriOI GRGCYC 2 cut(s) 130, 331
Fsp4HI GCNGC 8 cut(s) 96, 99, 108, 111, 114, 117, 120, 690
FspBI CTAG 3 cut(s) 516, 527, 680
GluI GCNGC 8 cut(s) 96, 99, 108, 111, 114, 117, 120, 690
GsuI CTGGAG 2 cut(s) 210, 401
HaeIII GGCC 2 cut(s) 903, 940
HapII CCGG 1 cut(s) 123
Hin1II CATG 2 cut(s) 570, 604
HindIII AAGCTT 1 cut(s) 788
HinfI GANTC 3 cut(s) 257, 343, 523
HpaII CCGG 1 cut(s) 123
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 4 cut(s) 205, 252, 348, 579
Hpy188III TCNNGA 3 cut(s) 380, 494, 527
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 74, 903
HpyCH4III ACNGT 3 cut(s) 272, 363, 505
HpyCH4IV ACGT 2 cut(s) 135, 445
HpyCH4V TGCA 5 cut(s) 233, 392, 424, 689, 839
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 95, 104, 107, 113, 116, 119, 125
HpyF3I CTNAG 5 cut(s) 22, 32, 310, 347, 706
HpySE526I ACGT 2 cut(s) 135, 445
Hsp92II CATG 2 cut(s) 570, 604
KpnI GGTACC 1 cut(s) 276
Kzo9I GATC 4 cut(s) 25, 583, 699, 968
LmnI GCTCC 4 cut(s) 125, 133, 191, 382
Lsp1109I GCAGC 3 cut(s) 85, 107, 701
LweI GCATC 4 cut(s) 175, 242, 701, 848
MaeI CTAG 3 cut(s) 516, 527, 680
MaeII ACGT 2 cut(s) 135, 445
MaeIII GTNAC 2 cut(s) 505, 552
MalI GATC 4 cut(s) 27, 585, 701, 970
MboI GATC 4 cut(s) 25, 583, 699, 968
MfeI CAATTG 1 cut(s) 858
MflI RGATCY 3 cut(s) 25, 583, 968
MhlI GDGCHC 3 cut(s) 130, 331, 821
MlsI TGGCCA 1 cut(s) 903
MluCI AATT 6 cut(s) 157, 220, 265, 320, 534, 858
MluNI TGGCCA 1 cut(s) 903
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 7 cut(s) 342, 384, 396, 397, 597, 662, 754
Mox20I TGGCCA 1 cut(s) 903
MscI TGGCCA 1 cut(s) 903
MseI TTAA 6 cut(s) 239, 296, 467, 479, 735, 792
Msp20I TGGCCA 1 cut(s) 903
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 1 cut(s) 123
MunI CAATTG 1 cut(s) 858
Mva1269I GAATGC 1 cut(s) 627
MwoI GCNNNNNNNGC 8 cut(s) 11, 95, 104, 107, 113, 116, 119, 125
NdeII GATC 4 cut(s) 25, 583, 699, 968
NlaIII CATG 2 cut(s) 570, 604
NlaIV GGNNCC 4 cut(s) 168, 274, 384, 877
NmeAIII GCCGAG 1 cut(s) 65
NmuCI GTSAC 2 cut(s) 505, 552
NspV TTCGAA 1 cut(s) 318
PctI GAATGC 1 cut(s) 627
PfeI GAWTC 2 cut(s) 257, 523
PkrI GCNGC 8 cut(s) 97, 100, 109, 112, 115, 118, 121, 691
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PshAI GACNNNNGTC 1 cut(s) 503
Psp124BI GAGCTC 2 cut(s) 130, 331
PspN4I GGNNCC 4 cut(s) 168, 274, 384, 877
PspPI GGNCC 2 cut(s) 167, 938
PstI CTGCAG 1 cut(s) 426
PsuI RGATCY 3 cut(s) 25, 583, 968
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 2 cut(s) 274, 365
RsaNI GTAC 2 cut(s) 273, 364
SacI GAGCTC 2 cut(s) 130, 331
SaqAI TTAA 6 cut(s) 239, 296, 467, 479, 735, 792
SatI GCNGC 8 cut(s) 96, 99, 108, 111, 114, 117, 120, 690
Sau3AI GATC 4 cut(s) 25, 583, 699, 968
Sau96I GGNCC 2 cut(s) 167, 938
SbfI CCTGCAGG 1 cut(s) 426
SchI GAGTC 1 cut(s) 337
SdaI CCTGCAGG 1 cut(s) 426
SduI GDGCHC 3 cut(s) 130, 331, 821
SfaNI GCATC 4 cut(s) 175, 242, 701, 848
SfcI CTRYAG 2 cut(s) 15, 422
SfuI TTCGAA 1 cut(s) 318
SinI GGWCC 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 962
SmoI CTYRAG 1 cut(s) 962
Sse8387I CCTGCAGG 1 cut(s) 426
Sse9I AATT 6 cut(s) 157, 220, 265, 320, 534, 858
SsiI CCGC 8 cut(s) 5, 105, 108, 111, 114, 117, 120, 866
SspI AATATT 1 cut(s) 246
SspMI CTAG 3 cut(s) 516, 527, 680
SstI GAGCTC 2 cut(s) 130, 331
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 3 cut(s) 272, 363, 505
TaiI ACGT 2 cut(s) 138, 448
TaqI TCGA 3 cut(s) 291, 318, 774
TasI AATT 6 cut(s) 157, 220, 265, 320, 534, 858
TatI WGTACW 1 cut(s) 363
TauI GCSGC 5 cut(s) 110, 113, 116, 119, 122
TfiI GAWTC 2 cut(s) 257, 523
Tru1I TTAA 6 cut(s) 239, 296, 467, 479, 735, 792
Tru9I TTAA 6 cut(s) 239, 296, 467, 479, 735, 792
TscAI CASTG 3 cut(s) 436, 849, 911
TseFI GTSAC 2 cut(s) 505, 552
TseI GCWGC 3 cut(s) 95, 98, 689
Tsp45I GTSAC 2 cut(s) 505, 552
TspDTI ATGAA 2 cut(s) 270, 783
TspGWI ACGGA 1 cut(s) 535
TspRI CASTG 3 cut(s) 436, 849, 911
VpaK11BI GGWCC 1 cut(s) 167
XapI RAATTY 1 cut(s) 534
XbaI TCTAGA 1 cut(s) 526
XspI CTAG 3 cut(s) 516, 527, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.